BAC Information

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BAC

Clone NameB6Ng01-227A20
Chromosome12 (Build37)
Map Location 116,986,495 - 116,986,950
singlet/doubletsinglet
Overlap geneIgh
Upstream geneIghv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886
Downstream geneIghv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, Ptprn2, LOC627375
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227A20.bB6Ng01-227A20.g
ACCGA040823GA040824
length9871,185
definitionB6Ng01-227A20.b B6Ng01-227A20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgttcagttctgagccccatttttcaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctcttggtggtct
ttttgtcttattgacggtgtcttttgtcttgcagaagctggctgttcctc
agaaaattggacatagtactaccggaggatccagcaatacctctcctggg
catatatccagaagatgtcccaaccggtaagaaggacacatgctccacta
tgttcatagcagccttatttataatagccagaagctggaaagaacccaga
tgcccctcaacagaggaatggatacagaaaatgtggtacatttacacaat
ggagtactactcagctattaaaaaaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatccccctccttagaattgggaa
caaaacacccatggaaggagttacagggacaaagtttggagctgagacga
aaggatggaccatatagagactgccatatccagggattcaccccataatc
agcttccaaacactgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgttctcttgtgagactatgctggggcctagcaaa
cacagaagtggatgctcacagtcagctattggatggatcacagggcctcc
caatggaggagctagagaaagtaccctaagtagctaagggatctgcaacc
ctataggtggaacaacactatgaacttaccagtaccc
gaattcaggcaggagctcaaactggacaggaacctggaatcaggaactga
tacagaggctatggatgcactctacttactggattgctcagtatgttttc
tatggactaggctctccaacatcaaacactaattaagaaaatattctgca
agattggtgcagcttggtattatgacgacatttcttcactcagttgaagt
cctctcctctcagatgactatagattgtgttaaaccaacataaaaccaac
actcacagttaatattatattacacatgatctttaaaaatgtctgcatca
tgtgcccataccaactattgttctaaagagatctacataaaatatttttc
tagtccaatgttccaaatactttcaatgttaaatattgaactacgatgat
gtgtccaacataatttataagcaattataaatggtgatatttgaaagtat
taaaaacaaaaattaacaaaatgttgacggagctaaaaaaaaaaacccac
ctttaaaagctaaaaccatacagtggaaaaaagacagcattgtcaacaaa
tggtgctggttcaactggaggttagcatgtagaagaatgcaaatcaatcc
attcttaactcctggtacaaagctcacatccaagtagatcaaggacctcc
acataaaaccagatacagtgaaactaattgaaaagaaagtggggaagagc
ctcaagcaaatgggcacaggggaaaatgtcctgaacagaacaccagtagc
ttatgctataagatcaagaattgacaaatgggacctcataaaattgcaaa
gcttctgtaaaggcaaaagacattgtcaataagacaaaatagcaacgaac
acattgggaaaagacctttaccaaccctacatccgatagagggctagtat
ctaatatatagaaagaactcaagaagttaaaatccagatatcaaatatac
cctattaaaaatggaatacagagctaaacaaagaattcccaactgaggaa
taccgaatgcttgagaagcactaaagaaatgttcaacatcataggtcatc
agtgaaaagccaaatcaaacaccctgagattcaccttccacaccagtcag
aaaatctagatcaaaatccagtgaacagcagttggttagaccgggaaaga
gaacactccctcatgttggggggttacaagcctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_116986495_116986950
seq2: B6Ng01-227A20.b_47_561 (reverse)

seq1  TATTGTGTGAGTTCCTTTGTGAATGTGTTACCTCACTCAGGATGATGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGTGAGTTCCTTTGTGAATGTGTTACCTCACTCAGGATGATGCCC  50

seq1  TCCAGGTCCATCCATTTGGCCAGGAATTTCATAAATTCATTCTTTTTAAT  100
      |||||||||||||||||||| |||||||||||||||||||| ||||||||
seq2  TCCAGGTCCATCCATTTGGCTAGGAATTTCATAAATTCATT-TTTTTAAT  99

seq1  AGCTGAGTAGTACTCCATTGTGTAGATGTACCACATCTTCTGTATCCATT  150
      |||||||||||||||||||||||| ||||||||||| |||||||||||||
seq2  AGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTCTGTATCCATT  149

seq1  CCTCTGTTGAGGGGCATCTGGGTTCCTTCCAGCTTCTGGCTATTATAAAT  200
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAAT  199

seq1  AAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGTTGGGGC  250
      ||||||||||||||||||||||||||||||||||||||||| |||||| |
seq2  AAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCGGTTGGGAC  249

seq1  ATCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCGGTAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCGGTAGTA  299

seq1  CTATATCCAGTTTTCTGAGGAACCGCCAGACTGATCTCC--------AGA  342
      |||| |||| ||||||||||||| ||||| ||  ||| |        |||
seq2  CTATGTCCAATTTTCTGAGGAACAGCCAG-CT--TCTGCAAGACAAAAGA  346

seq1  GTGGTTGTACAAGCCTGCAATCCCACCAACA-ATGGAGGAGTGTTCCT--  389
           |  | ||| |   ||  ||||||| | || | | |  | || |  
seq2  CACCGTCAATAAGACAAAAAGACCACCAAGAGATTGGGAAAGGATCTTTA  396

seq1  -CTTTCTCCACATC--------CAC-----GCCAGCATCT----------  415
       || || | | |||         ||      ||| ||| |          
seq2  CCTATC-CTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACT  445

seq1  -------GCTGTCACCTGAATTT------------TTGA----------T  436
             |  | |  | |||  |            ||||          |
seq2  CAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTGAAAAATGGGGCT  495

seq1  CAGAACTGAACAAAGAATTC  456
      ||||||||||||||||||||
seq2  CAGAACTGAACAAAGAATTC  515