BAC Information

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BAC

Clone NameB6Ng01-227B24
Chromosome12 (Build37)
Map Location 68,102,063 - 68,193,164
singlet/doubletdoublet
Overlap geneMdga2
Upstream geneLOC100040700, EG238217
Downstream geneLOC100040745, LOC100040681
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227B24.bB6Ng01-227B24.g
ACCGA040877GA040878
length1,1421,099
definitionB6Ng01-227B24.b B6Ng01-227B24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,191,998 - 68,193,164)(68,102,063 - 68,103,164)
sequence
gaattcctatttcttgcccttaaagagttttcctgcctggtgaaattttc
tgcttcaccttagcatattctctgttttaaccagatttttttttgtggaa
tggaatgcttttcttcttataacacactccattattttaactccattatt
ttaactccattctaacatcccatgtccaattgatgtattttcctccaaga
ttgtagattttaatcttagaggaaagtactataaaataatcagcctataa
gactggtaggcaagtctaacatctccgagagtctcttcacctcagcaaaa
attaattcatataaatttgactgtttggtattgtgaatttttttttttag
gtttcagaaacttccttgtgcttgagagttatttgctgaaatttgtaagt
gtcgtatttttgtaagacatgtggagcctcttttaatgatgctatatttc
aattttggaagaaactgttatacaacagatgtaataggaagatcatgtgt
gtctgtcagtgagaaatagagatactttaactttgggaaacactactgtt
aaggattttcttatggattttgctttcttggatctttctattaaaattac
acctcaatgaggaggatgatttatgggaacccttgctcaggtttaatact
gaagtacctgatctatgattgagtgttacagcatgatgtgtggagtggca
ttttctactagaagaatgaagttaatgtcataggtgttcacatggtacac
atacaacaatttagagaccagatatcattaattaaaagaaaaaacacaaa
tgtgacagtattcctaacaagatttaataaaatattttgatgcaaggaaa
cttattggtaatttcatttagtcccttatgcaatacccagtaaatgtatt
tttgtttgtctaagtgtcctgagaatctatactacttaactattgatttt
cctaagaaattaatatttaaattgatcttttaaatataattctattatat
ttatatattttagcaaaatagatatgttatacacacataaatatatatat
aaatgtgaatatattaaataaaacataaagatctgatgtatggtctaata
tgattggtgtaaccctattccatagcaatttattacagtaaa

gaattcattctccatgatctcaaaaaaaggtagttattttagtttacctt
tgttataatcttcaagaacacagagagagggggagacagagacagagaca
gactgagagacagagacagagggagagaaggggagtgggggcaaaatgtt
aacatattggtagaatgagttacaaaggagtagagagttctcatgtgtct
tttatcctgcttcctcttatgaggacatataataaaatcaactacctttc
catactgaattaacaaaactatagtttttgttttgttttgttttgctttt
ttcagataacaaaatttaggtttttttttttccagaactcattgttttac
cactctaatgccttttaatactgtagaaaatattgctggctaccatattg
aattttgggttttgctcaacccacgactttcccaatttttgaggagactg
gctttcacagccctgttatcttgaaaggacactgatcacttgttttgtga
acatctctcaatttagttttgtttaatattttctcatggtttgattttga
ggtcacacatcagtgagcatactgcatagattaagtttttctcatcatgt
cctaatttactgacatgtttatgatctatagtgaagtccactttgctaaa
gtgtgctgccaggtgctctgattttattctgctgctatggcaaacatcac
caacaaaagcaacatagggaatagaaagttttggctcacatgcaatggtc
taccactaagtgaaatcaggacaggaactcaagcaggaactgaaaacaca
agccatgtagatgctgtctgatagctgcacaaaggctcattcttagtttt
cttcttagcttatgaccgcctaggaatagtgcccctcacagtggactggg
aatttctatgtcatttaaaaatcaagacatactcacccatcaagatacca
caggacaatctaatccaggtagtctttcaattgagacttcatccagagat
gattcttgactgtgtcaaattaacgactgaacttacacatgccagtattt
cttctaaataggttttccttctgttcattgtattaagcatcatctattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_68191998_68193164
seq2: B6Ng01-227B24.b_45_1186 (reverse)

seq1  TTTACTGTAATAAAATTTTGCTAAATGAAAAATAGTGTTACCACAATTAA  50
      ||||||||||||||   |||||  |||   ||||| |||| ||| | | |
seq2  TTTACTGTAATAAA---TTGCT--ATG--GAATAGGGTTA-CACCAATCA  42

seq1  TATTTAAGACAATAACAATTCAGATCCTTTATGTTTTATTTTTAATTATA  100
      ||||  |||| || |||  |||||| |||||||||||||||   | ||| 
seq2  TATT--AGACCAT-ACA--TCAGAT-CTTTATGTTTTATTT---AATAT-  82

seq1  ATTCACATTTATATTATATATTTATTGTGTTGTATAACATATTCTATTTT  150
      ||||||||||||| |||||||||| |||| ||||||||||| |||| |||
seq2  ATTCACATTTATA-TATATATTTA-TGTG-TGTATAACATA-TCTA-TTT  127

seq1  TGCTAAAATATATAAATTATAATAGAATTTATATTTTAAAAGATCAA-TT  199
      |||||||||||||||| |||||||||| ||||| ||||||||||||| ||
seq2  TGCTAAAATATATAAA-TATAATAGAA-TTATA-TTTAAAAGATCAATTT  174

seq1  AAATATTAATTCTTTAGGAAAATCAATAGTTAAGTAGTATAGATTCTCAG  249
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  AAATATTAATTTCTTAGGAAAATCAATAGTTAAGTAGTATAGATTCTCAG  224

seq1  GACACTTAGACAAACAAAAATACATTTACTGGGTATTGCCTTAGGGACTA  299
      ||||||||||||||||||||||||||||||||||||||| | ||||||||
seq2  GACACTTAGACAAACAAAAATACATTTACTGGGTATTGCATAAGGGACTA  274

seq1  AATGAAATTACCAATAAGTTTCCTTGCATCAAAATATTTTATTAAATCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATTACCAATAAGTTTCCTTGCATCAAAATATTTTATTAAATCTT  324

seq1  GTTAGGAATACTGTCACATTTGTGTTTTTTCTTTTAATTAATGATATCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGAATACTGTCACATTTGTGTTTTTTCTTTTAATTAATGATATCTG  374

seq1  GTCTCTAAATTGTTGTATGTGTACCATGTGAACACCTATGACATTAACTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTAAATTGTTGTATGTGTACCATGTGAACACCTATGACATTAACTT  424

seq1  CATTCTTCTAGTAGAAAATGCCACTCCACACATCATGCTGTAACACTCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTCTAGTAGAAAATGCCACTCCACACATCATGCTGTAACACTCAA  474

seq1  TCATAGATCAGGTACTTCAGTATTAAACCTGAGCAAGGGTTCCCATAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGATCAGGTACTTCAGTATTAAACCTGAGCAAGGGTTCCCATAAAT  524

seq1  CATCCTCCTCATTGAGGTGTAATTTTAATAGAAAGATCCAAGAAAGCAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCCTCATTGAGGTGTAATTTTAATAGAAAGATCCAAGAAAGCAAA  574

seq1  ATCCATAAGAAAATCCTTAACAGTAGTGTTTCCCAAAGTTAAAGTATCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATAAGAAAATCCTTAACAGTAGTGTTTCCCAAAGTTAAAGTATCTC  624

seq1  TATTTCTCACTGACAGACACACATGATCTTCCTATTACATCTGTTGTATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTCACTGACAGACACACATGATCTTCCTATTACATCTGTTGTATA  674

seq1  ACAGTTTCTTCCAAAATTGAAATATAGCATCATTAAAAGAGGCTCCACAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTCTTCCAAAATTGAAATATAGCATCATTAAAAGAGGCTCCACAT  724

seq1  GTCTTACAAAAATACGACACTTACAAATTTCAGCAAATAACTCTCAAGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTACAAAAATACGACACTTACAAATTTCAGCAAATAACTCTCAAGCA  774

seq1  CAAGGAAGTTTCTGAAACCTAAAAAAAAAAATTCACAATACCAAACAGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAGTTTCTGAAACCTAAAAAAAAAAATTCACAATACCAAACAGTC  824

seq1  AAATTTATATGAATTAATTTTTGCTGAGGTGAAGAGACTCTCGGAGATGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTATATGAATTAATTTTTGCTGAGGTGAAGAGACTCTCGGAGATGT  874

seq1  TAGACTTGCCTACCAGTCTTATAGGCTGATTATTTTATAGTACTTTCCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTGCCTACCAGTCTTATAGGCTGATTATTTTATAGTACTTTCCTC  924

seq1  TAAGATTAAAATCTACAATCTTGGAGGAAAATACATCAATTGGACATGGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTAAAATCTACAATCTTGGAGGAAAATACATCAATTGGACATGGG  974

seq1  ATGTTAGAATGGAGTTAAAATAATGGAGTTAAAATAATGGAGTGTGTTAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGAATGGAGTTAAAATAATGGAGTTAAAATAATGGAGTGTGTTAT  1024

seq1  AAGAAGAAAAGCATTCCATTCCACAAAAAAAAATCTGGTTAAAACAGAGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAAAGCATTCCATTCCACAAAAAAAAATCTGGTTAAAACAGAGA  1074

seq1  ATATGCTAAGGTGAAGCAGAAAATTTCACCAGGCAGGAAAACTCTTTAAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTAAGGTGAAGCAGAAAATTTCACCAGGCAGGAAAACTCTTTAAG  1124

seq1  GGCAAGAAATAGGAATTC  1167
      ||||||||||||||||||
seq2  GGCAAGAAATAGGAATTC  1142


seq1: chr12_68102063_68103164
seq2: B6Ng01-227B24.g_64_1162

seq1  GAATTCATTCTCCATGATCTCAAAAAAAGGTAGTTATTTTAGTTTACCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTCCATGATCTCAAAAAAAGGTAGTTATTTTAGTTTACCTT  50

seq1  TGTTATAATCTTCAAGAACACAGAGAGAGGGGGAGACAGAGACAGAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATAATCTTCAAGAACACAGAGAGAGGGGGAGACAGAGACAGAGACA  100

seq1  GACTGAGAGACAGAGACAGAGGGAGAGAAGGGGAGTGGGGGCAAAATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGAGACAGAGACAGAGGGAGAGAAGGGGAGTGGGGGCAAAATGTT  150

seq1  AACATATTGGTAGAATGAGTTACAAAGGAGTAGAGAGTTCTCATGTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATTGGTAGAATGAGTTACAAAGGAGTAGAGAGTTCTCATGTGTCT  200

seq1  TTTATCCTGCTTCCTCTTATGAGGACATATAATAAAATCAACTACCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCTGCTTCCTCTTATGAGGACATATAATAAAATCAACTACCTTTC  250

seq1  CATACTGAATTAACAAAACTATAGTTTTTGTTTTGTTTTGTTTTGCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGAATTAACAAAACTATAGTTTTTGTTTTGTTTTGTTTTGCTTTT  300

seq1  TTCAGATAACAAAATTTAGGTTTTTTTTTTTCCAGAACTCATTGTTTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATAACAAAATTTAGGTTTTTTTTTTTCCAGAACTCATTGTTTTAC  350

seq1  CACTCTAATGCCTTTTAATACTGTAGAAAATATTGCTGGCTACCATATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTAATGCCTTTTAATACTGTAGAAAATATTGCTGGCTACCATATTG  400

seq1  AATTTTGGGTTTTGCTCAACCCACGACTTTCCCAATTTTTGAGGAGACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGGGTTTTGCTCAACCCACGACTTTCCCAATTTTTGAGGAGACTG  450

seq1  GCTTTCACAGCCCTGTTATCTTGAAAGGACACTGATCACTTGTTTTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCACAGCCCTGTTATCTTGAAAGGACACTGATCACTTGTTTTGTGA  500

seq1  ACATCTCTCAATTTAGTTTTGTTTAATATTTTCTCATGGTTTGATTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCTCAATTTAGTTTTGTTTAATATTTTCTCATGGTTTGATTTTGA  550

seq1  GGTCACACATCAGTGAGCATACTGCATAGATTAAGTTTTTCTCATCATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACACATCAGTGAGCATACTGCATAGATTAAGTTTTTCTCATCATGT  600

seq1  CCTAATTTACTGACATGTTTATGATCTATAGTGAAGTCCACTTTGCTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTTACTGACATGTTTATGATCTATAGTGAAGTCCACTTTGCTAAA  650

seq1  GTGTGCTGCCAGGTGCTCTGATTTTATTCTGCTGCTATGGCAAACATCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTGCCAGGTGCTCTGATTTTATTCTGCTGCTATGGCAAACATCAC  700

seq1  CAACAAAAGCAACATAGGGAATAGAAAGTTTTGGCTCACATGCAATGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAAGCAACATAGGGAATAGAAAGTTTTGGCTCACATGCAATGGTC  750

seq1  TACCACTAAGTGAAATCAGGACAGGAACTCAAGCAGGAACTGAAAACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTAAGTGAAATCAGGACAGGAACTCAAGCAGGAACTGAAAACACA  800

seq1  AGCCATGTAGATGCTGTCTGATAGCTGCACAAAGGCTCATTCTTAGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGTAGATGCTGTCTGATAGCTGCACAAAGGCTCATTCTTAGTTTT  850

seq1  CTTCTTAGCTTATGACCGCCTAGGAATAGTGCCCCTCACAGTGGACTGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAGCTTATGACCGCCTAGGAATAGTGCCCCTCACAGTGGACTGGG  900

seq1  AATTTCTATGTCATTTAAAAATCAAGACAATACTCACCCATCAAAGATAC  950
      |||||||||||||||||||||||||||| ||||||||||||| |||||||
seq2  AATTTCTATGTCATTTAAAAATCAAGAC-ATACTCACCCATC-AAGATAC  948

seq1  CACAGGACAATCTAATCCAGGTAGTCCTTCAATTGAGACTTCATCCAGAG  1000
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CACAGGACAATCTAATCCAGGTAGTCTTTCAATTGAGACTTCATCCAGAG  998

seq1  ATGATTCTTGACTGTGTCAAATTAACGACTGAAACTAACAACAATGCCAG  1050
      ||||||||||||||||||||||||||||||| |||| |||   |||||||
seq2  ATGATTCTTGACTGTGTCAAATTAACGACTG-AACTTACA--CATGCCAG  1045

seq1  TATT--CTCTAAAATAGTTTTTCTTCTGTTCCATGTATTAGCAATCATCT  1098
      ||||   ||||||   ||||| |||||||||  |||||||   |||||||
seq2  TATTTCTTCTAAATAGGTTTTCCTTCTGTTCATTGTATTAAGCATCATCT  1095

seq1  ATTT  1102
      ||||
seq2  ATTT  1099


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