BAC Information

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BAC

Clone NameB6Ng01-227E07
Chromosome12 (Build37)
Map Location 72,613,686 - 72,772,210
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040965, LOC100041061, Frmd6, Actr10, Psma3, 3110056K07Rik, Arid4a, Timm9, LOC100041035, 2700049A03Rik, LOC666162, Dact1, LOC100041190
Downstream geneDaam1, LOC666213, LOC666220, Gpr135, LOC100041239, 2810055F11Rik, 1200003C05Rik, 4930403N07Rik, Rtn1, Lrrc9, 1810048J11Rik, LOC209183, LOC100041323, Dhrs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227E07.bB6Ng01-227E07.g
ACCGA040982GA040983
length1,0931,143
definitionB6Ng01-227E07.b B6Ng01-227E07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,613,686 - 72,614,778)(72,771,073 - 72,772,210)
sequence
gaattcattctaatatgaaatagatggcatgatagcttatcatagaaact
gccaagcccccagggcctctgcttccttgaaaaattgctaagctgaattt
aatgccatagaaatcaacttcctgaaggccagaattagtctgcccttttg
gtattacccagcattagctgatatgatcaacactaaggacaggggagaag
cggggatttctcccccactgtcctaaatgcaggcaaatccattagaggaa
cttatcacattttaaaattcagaaggatgtgaaaatatgcatgaataggt
aactgtgaatagaagggggaggggaagcacaggccttgggcacagatcct
tcattagttaggaattagagtagctgctaaggagaatcaagacgttatct
ctgctctctctctctctaaaagttcattatcattttaaaagaattcaatg
gagtagtaagattataggcttctgagtcaggctgcctcggttggaatatc
agctgttaattaggtgtgtgatccagaaagagttactttactcactgtga
tttacatccgggagatgggaattccagttacatgctgcagtgtaacaatt
acttaaacactgaatggaataacacaatacccagcgtactaaattgcatg
actttgtatgccgggcatttgggcagacctttgcctagtatgcctcatgc
tctgtggtactcagctagcagctgttagctctacaggatccaggaagagt
tctctcattgtctggtgctttgttggagattgactagaagctgggctgag
catctttctaggtggtgtcataagcggtggttctcaatcttctgaatgct
gcaaccctttaatacagttcctcacattgtggtcacccccaaccataaaa
ttattttgtcgtaacctcataactgtgatttttgctactgtatgaattgt
aatgtaaatatctgtgttttccaatggtgttaagtaacccctgtgaaagg
gccatttgatctccaagggggtggagaaccactgtaaagcctcaggtcca
aaaggggagggtaccagaaggagaatgctcgtaatgcttgggc
gaattccttcagaacagtatagaagagcatggctagattatttcagtcac
gagtgatcttaatcatactctgccctcgccccctctctgacttgaccttc
actccttgtcatctgccaccttctccatcttccctgtttaggtgatctcc
atgctccagtcttccaggtctgtcctgcagttagaatgaactgttttgaa
gtctcatggaatttcactgactggcctcaccatgtggagagcaatcccat
ggccttgtctcttacctgcagcaagtgctctacagttttttttaaattat
cttggaatgttttggtttcagaaaatatatttcataccaactggccactg
tttccactgtatttcaaagtttctctccaaggcttgaaatatcattgccc
ccagcaggaggtaaatataagagtcatcagcagggtgcctttctaaactt
tggtgagttttctatttttcagagacaactatcagggtcagagaatacag
caagtcacttccctacagattcccaatgcaacaaaacaaaattaaaatct
ccaaatgtcaggcagactgttaatcttgagacaactatacaaaagaaaat
gaggcccaagcaatgtgagaagcagaaaaacaattttgcttttctcatga
gcatatacttctttatttatggaaaatgatggattgtactttgggggaga
tagggaagtcatggagggtcaaagttggccaagtaacccctttactccgc
ctccttagagtaagcttgttccagagtcacacatgagcttgtgtgcagca
aatattggcacacagagatgttttgcttcactgacgagatactcgtccat
cagtcagaccttcagtgactagctgtgcaaactttcactgttacacaccc
aggcttcatttctttgtctataaatgtacacactaataggtacgtaatgg
aattctggagaaagatgaaatgtgtggaatacactgaagtgagacccaga
aagtaggaaaacagctagcatacttcagccagcagtgagggggagcccag
tgtaatatatacctgacagtgtgacttagagatggagaacatctactcac
cctcttacatcttgccctggtcccttaactgagcaaaggggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_72613686_72614778
seq2: B6Ng01-227E07.b_45_1137

seq1  GAATTCATTCTAATATGAAATAGATGGCATGATAGCTTATCATAGAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTAATATGAAATAGATGGCATGATAGCTTATCATAGAAACT  50

seq1  GCCAAGCCCCCAGGGCCTCTGCTTCCTTGAAAAATTGCTAAGCTGAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCCCCCAGGGCCTCTGCTTCCTTGAAAAATTGCTAAGCTGAATTT  100

seq1  AATGCCATAGAAATCAACTTCCTGAAGGCCAGAATTAGTCTGCCCTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCATAGAAATCAACTTCCTGAAGGCCAGAATTAGTCTGCCCTTTTG  150

seq1  GTATTACCCAGCATTAGCTGATATGATCAACACTAAGGACAGGGGAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTACCCAGCATTAGCTGATATGATCAACACTAAGGACAGGGGAGAAG  200

seq1  CGGGGATTTCTCCCCCACTGTCCTAAATGCAGGCAAATCCATTAGAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGATTTCTCCCCCACTGTCCTAAATGCAGGCAAATCCATTAGAGGAA  250

seq1  CTTATCACATTTTAAAATTCAGAAGGATGTGAAAATATGCATGAATAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCACATTTTAAAATTCAGAAGGATGTGAAAATATGCATGAATAGGT  300

seq1  AACTGTGAATAGAAGGGGGAGGGGAAGCACAGGCCTTGGGCACAGATCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGAATAGAAGGGGGAGGGGAAGCACAGGCCTTGGGCACAGATCCT  350

seq1  TCATTAGTTAGGAATTAGAGTAGCTGCTAAGGAGAATCAAGACGTTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGTTAGGAATTAGAGTAGCTGCTAAGGAGAATCAAGACGTTATCT  400

seq1  CTGCTCTCTCTCTCTCTAAAAGTTCATTATCATTTTAAAAGAATTCAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTCTCTCTCTCTAAAAGTTCATTATCATTTTAAAAGAATTCAATG  450

seq1  GAGTAGTAAGATTATAGGCTTCTGAGTCAGGCTGCCTCGGTTGGAATATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTAAGATTATAGGCTTCTGAGTCAGGCTGCCTCGGTTGGAATATC  500

seq1  AGCTGTTAATTAGGTGTGTGATCCAGAAAGAGTTACTTTACTCACTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTAATTAGGTGTGTGATCCAGAAAGAGTTACTTTACTCACTGTGA  550

seq1  TTTACATCCGGGAGATGGGAATTCCAGTTACATGCTGCAGTGTAACAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATCCGGGAGATGGGAATTCCAGTTACATGCTGCAGTGTAACAATT  600

seq1  ACTTAAACACTGAATGGAATAACACAATACCCAGCGTACTAAATTGCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAACACTGAATGGAATAACACAATACCCAGCGTACTAAATTGCATG  650

seq1  ACTTTGTATGCCGGGCATTTGGGCAGACCTTTGCCTAGTATGCCTCATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTATGCCGGGCATTTGGGCAGACCTTTGCCTAGTATGCCTCATGC  700

seq1  TCTGTGGTACTCAGCTAGCAGCTGTTAGCTCTACAGGATCCAGGAAGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGTACTCAGCTAGCAGCTGTTAGCTCTACAGGATCCAGGAAGAGT  750

seq1  TCTCTCATTGTCTGGTGCTTTGTTGGAGATTGACTAGAAGCTGGGCTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCATTGTCTGGTGCTTTGTTGGAGATTGACTAGAAGCTGGGCTGAG  800

seq1  CATCTTTCTAGGTGGTGTCATAAGCGGTGGTTCTCAATCTTCTGAATGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTCTAGGTGGTGTCATAAGCGGTGGTTCTCAATCTTCTGAATGCT  850

seq1  GCAACCCTTTAATACAGTTCCTCACATTGTGGTCACCCCCAACCATAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCCTTTAATACAGTTCCTCACATTGTGGTCACCCCCAACCATAAAA  900

seq1  TTATTTTGTCGTAACCTCATAACTGTGATTTTTGCTACTGTTATGAATTG  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTATTTTGTCGTAACCTCATAACTGTGATTTTTGCTACTG-TATGAATTG  949

seq1  TAATGTAAATATCTGTGTTTTCCAATGGTGTTAAGTAACCCCTGTGAAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTAAATATCTGTGTTTTCCAATGGTGTTAAGTAACCCCTGTGAAAG  999

seq1  GGCCATTTGATCTCCAAAGGGGTGGAGAACCACTGTAAAGGCTCAGGGTC  1050
      ||||||||||||||||| |||||||||||||||||||||| |||| ||||
seq2  GGCCATTTGATCTCCAAGGGGGTGGAGAACCACTGTAAAGCCTCA-GGTC  1048

seq1  CAAAA-GTGAGGGTACCAG-AGGAGGATGCTCGTAAGGCTTGGGC  1093
      ||||| | ||||||||||| ||||| |||||||||| ||||||||
seq2  CAAAAGGGGAGGGTACCAGAAGGAGAATGCTCGTAATGCTTGGGC  1093

seq1: chr12_72771073_72772210
seq2: B6Ng01-227E07.g_67_1209 (reverse)

seq1  TGCCCC-TTGCTCTGT--AGGGCCCAGGGC-AGATGGTAGAGGGTGGAGT  46
      |||||| |||||| ||  |||| ||||||| |||||  ||||||| ||||
seq2  TGCCCCTTTGCTCAGTTAAGGGACCAGGGCAAGATGTAAGAGGGT-GAGT  49

seq1  AGATGTCCCTCATTCTCT-AGTCACACTGTCAGTATTATATTACACTGGG  95
      ||||||  |||  ||||| ||||||||||||||   ||||||||||||||
seq2  AGATGT-TCTCCATCTCTAAGTCACACTGTCAGGTATATATTACACTGGG  98

seq1  CT-CCCCTCACTGCTGGCTGAGGTATGCTGGCTG-TTTCCTACTTTCTGG  143
      || |||||||||||||||||| ||||||| |||| |||||||||||||||
seq2  CTCCCCCTCACTGCTGGCTGAAGTATGCTAGCTGTTTTCCTACTTTCTGG  148

seq1  GTCTCACTTCAGTGTATTCCACACATTTCATCTTTCT-CAGAATTCCATT  192
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTCTCACTTCAGTGTATTCCACACATTTCATCTTTCTCCAGAATTCCATT  198

seq1  ACGTACCTATTAGTGTGTACATTTTATAGACAAAGAAGTGAAGCCTGGGT  242
      ||||||||||||||||||||| ||||||||||||||| ||||||||||||
seq2  ACGTACCTATTAGTGTGTACA-TTTATAGACAAAGAAATGAAGCCTGGGT  247

seq1  GTGTAACAGTGAAAGTTTGCACAGCTAGTCACTGAAGGTCTGACTGATGG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAACAGTGAAAGTTTGCACAGCTAGTCACTGAAGGTCTGACTGATGG  297

seq1  ACGAGTATCTCGTCAGTGAAGCAAAACATCTCTGTGTGCCAATATTTGCT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGTATCTCGTCAGTGAAGCAAAACATCTCTGTGTGCCAATATTTGCT  347

seq1  GCACACAAGCTCATGTGTGACTCTGGAACAAGCTTACTCTAAGGAGGCGG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAAGCTCATGTGTGACTCTGGAACAAGCTTACTCTAAGGAGGCGG  397

seq1  AGTAAAGGGGTTACTTGGCCAACTTTGACCCTCCATGACTTCCCTATCTC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGGGGTTACTTGGCCAACTTTGACCCTCCATGACTTCCCTATCTC  447

seq1  CCCCAAAGTACAATCCATCATTTTCCATAAATAAAGAAGTATATGCTCAT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAGTACAATCCATCATTTTCCATAAATAAAGAAGTATATGCTCAT  497

seq1  GAGAAAAGCAAAATTGTTTTTCTGCTTCTCACATTGCTTGGGCCTCATTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGCAAAATTGTTTTTCTGCTTCTCACATTGCTTGGGCCTCATTT  547

seq1  TCTTTTGTATAGTTGTCTCAAGATTAACAGTCTGCCTGACATTTGGAGAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGTATAGTTGTCTCAAGATTAACAGTCTGCCTGACATTTGGAGAT  597

seq1  TTTAATTTTGTTTTGTTGCATTGGGAATCTGTAGGGAAGTGACTTGCTGT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTGTTTTGTTGCATTGGGAATCTGTAGGGAAGTGACTTGCTGT  647

seq1  ATTCTCTGACCCTGATAGTTGTCTCTGAAAAATAGAAAACTCACCAAAGT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTGACCCTGATAGTTGTCTCTGAAAAATAGAAAACTCACCAAAGT  697

seq1  TTAGAAAGGCACCCTGCTGATGACTCTTATATTTACCTCCTGCTGGGGGC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAGGCACCCTGCTGATGACTCTTATATTTACCTCCTGCTGGGGGC  747

seq1  AATGATATTTCAAGCCTTGGAGAGAAACTTTGAAATACAGTGGAAACAGT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATATTTCAAGCCTTGGAGAGAAACTTTGAAATACAGTGGAAACAGT  797

seq1  GGCCAGTTGGTATGAAATATATTTTCTGAAACCAAAACATTCCAAGATAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGTTGGTATGAAATATATTTTCTGAAACCAAAACATTCCAAGATAA  847

seq1  TTTAAAAAAAACTGTAGAGCACTTGCTGCAGGTAAGAGACAAGGCCATGG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAAAACTGTAGAGCACTTGCTGCAGGTAAGAGACAAGGCCATGG  897

seq1  GATTGCTCTCCACATGGTGAGGCCAGTCAGTGAAATTCCATGAGACTTCA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCTCTCCACATGGTGAGGCCAGTCAGTGAAATTCCATGAGACTTCA  947

seq1  AAACAGTTCATTCTAACTGCAGGACAGACCTGGAAGACTGGAGCATGGAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTTCATTCTAACTGCAGGACAGACCTGGAAGACTGGAGCATGGAG  997

seq1  ATCACCTAAACAGGGAAGATGGAGAAGGTGGCAGATGACAAGGAGTGAAG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTAAACAGGGAAGATGGAGAAGGTGGCAGATGACAAGGAGTGAAG  1047

seq1  GTCAAGTCAGAGAGGGGGCGAGGGCAGAGTATGATTAAGATCACTCGTGA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGTCAGAGAGGGGGCGAGGGCAGAGTATGATTAAGATCACTCGTGA  1097

seq1  CTGAAATAATCTAGCCATGCTCTTCTATACTGTTCTGAAGGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATAATCTAGCCATGCTCTTCTATACTGTTCTGAAGGAATTC  1143