BAC Information

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BAC

Clone NameB6Ng01-227M06
Chromosome12 (Build37)
Map Location 15,637,149 - 15,729,136
singlet/doubletdoublet
Overlap genenone
Upstream geneMap1lc3-ps7, LOC668492, LOC100042426
Downstream geneLOC217409, Trib2, LOC100043268, EG432636, LOC100043273, Lpin1, Ntsr2, Greb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227M06.bB6Ng01-227M06.g
ACCGA041351GA041352
length7601,009
definitionB6Ng01-227M06.b B6Ng01-227M06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,728,384 - 15,729,136)(15,637,149 - 15,638,152)
sequence
gaattccatgtgacctacagcctgttctctggctgtgttgggttgaccaa
ggtctgtcctgactttagtttgtatttcacagttttctgccctagaataa
gaacggaaacaggaggcttaccatgtgtggcctatgtctccctctccctg
tccctgtccctgtcctccctgtcctccctgtttccctctcctccctgtcc
tccctgtcccccctgtcctccctgtcctccctgtcctccctgtcctccct
gtcctccctgtcctccctgtcctccctgtcccccctgtcctccctgtcct
ccctctcctccctgtcctccctgtcccccctgtcctccctgtcctccctg
tcctccctctcctccctgtcctccctgtcctccctgtcctccctgtcccc
cctgtcctccctgtcctccctgtcctccctgtcctccctctcctccctgt
cctccctgtcctccctgtttccctctcctccctgtcctccctgtcctccc
tgtcctgcctgccctctctctcctccctctccttcctctcctccctcccc
ctctccctctcctttcatctgacatctgttcactaggctcatattcctcc
aggtaggctcccacacatagaagatctcctctggtgcaacttcctttaaa
cttcataaaagcaggaaaacaaaattttagttgtcattctctttggggtt
gccatttggaaaaactggggtaaactgcatcctgttttattcagaaagaa
caaagtgggg
gaattctcagctgtgttaggagataactggggaaatggtaggcttaggag
gacagcagggaggatttctgtgtgtcctagaagaatgcacttctccctcc
cctctcccccccccccaagttcactttctccacctgtaaagcactgggct
tcaagagatacttgtgttttctgagtcttctaatatgtaaacagccacac
aaatcaaataaatgtaaatggttgataaataggcaaaggaataaaaccaa
aattgatggatgaacgtatagatagataaaagatgatatatgatacacat
atattatagatagatagatagatagatagatagatagatagatagataga
taattaggcagagaaataatatataggtagatgtatctctgtctctcttt
gtctctaaagagaggcgatagacagacagatggacagatagatgatagac
agatgataggtagttagatagattgataggtgatatagatgaaagataga
tagatagatagatagacagacagatagacagatagttccatttagtgaaa
agaagcaaacaaatcagagaaattccttctccagtccaacctgacctgat
tgcagggcctttgtgctagtacacatcttttataaatcatccatgacatc
catgcctcgggctacgtcttcggtattctgctctgcatctcactgacttt
tactcatctcaagttctccctgggttttattataatcacactgaagacaa
gaagtatgtcaagtctattatttctatcagctgccttccttccttatagg
catgggatgggtttgtaatgttgtcaccaaatctgagtagcatctgtgta
tcttttttctctgaccagctttatgcttaaactgttacttttctgttgta
ttaaagtaagcacataaaatcttttcatcctactggaagattgtcctttc
taagctggtatggaaggttcatgcctgtgactctagctcctgagagtcaa
aggcaatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_15728384_15729136
seq2: B6Ng01-227M06.b_46_805 (reverse)

seq1  CCCAC-TTGTTC-TTCTGAAT-AAACAGGATGCAGTTTA-CCCAGTTTTT  46
      ||||| |||||| |||||||| ||||||||||||||||| ||||||||||
seq2  CCCACTTTGTTCTTTCTGAATAAAACAGGATGCAGTTTACCCCAGTTTTT  50

seq1  CCAAATGGCAACCC--AAGAG-ATGACAACCTAAAATTTGTTTTCCTGCT  93
      ||||||||||||||  ||||| ||||||||  ||| ||||||||||||||
seq2  CCAAATGGCAACCCCAAAGAGAATGACAACTAAAATTTTGTTTTCCTGCT  100

seq1  TTCTTGAAG-TTAAAGGAAGTTGCACCAGAGGAGATTCTTCTATGTGTGG  142
      ||  ||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  TTTATGAAGTTTAAAGGAAGTTGCACCAGAGGAGA-TCTTCTATGTGTGG  149

seq1  GAGCCTACCTGGAGGAATATGAGCCTAGTGAACAGATGTCAGATGAAAGG  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTACCTGGAGGAATATGAGCCTAGTGAACAGATGTCAGATGAAAGG  199

seq1  AGAGGGAGAGGGGGAGGGAGGAGAGGAAGGAGAGGGAGGAGAGAGAGGGC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGAGGGGGAGGGAGGAGAGGAAGGAGAGGGAGGAGAGAGAGGGC  249

seq1  AGGCAGGACAGGGAGGACAGGGAGGACAGGGAGGAGAGGGAAACAGGGAG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGACAGGGAGGACAGGGAGGACAGGGAGGAGAGGGAAACAGGGAG  299

seq1  GACAGGGAGGACAGGGAGGAGAGGGAGGACAGGGAGGACAGGGAGGACAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGAGGACAGGGAGGAGAGGGAGGACAGGGAGGACAGGGAGGACAG  349

seq1  GGAGGACAGGGGGGACAGGGAGGACAGGGAGGACAGGGAGGACAGGGAGG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGACAGGGGGGACAGGGAGGACAGGGAGGACAGGGAGGACAGGGAGG  399

seq1  AGAGGGAGGACAGGGAGGACAGGGAGGACAGGGGGGACAGGGAGGACAGG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGGACAGGGAGGACAGGGAGGACAGGGGGGACAGGGAGGACAGG  449

seq1  GAGGAGAGGGAGGACAGGGAGGACAGGGGGGACAGGGAGGACAGGGAGGA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAGGGAGGACAGGGAGGACAGGGGGGACAGGGAGGACAGGGAGGA  499

seq1  CAGGGAGGACAGGGAGGACAGGGAGGACAGGGAGGACAGGGAGGACAGGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGGACAGGGAGGACAGGGAGGACAGGGAGGACAGGGAGGACAGGG  549

seq1  GGGACAGGGAGGACAGGGAGGAGAGGGAAACAGGGAGGACAGGGAGGACA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGGGAGGACAGGGAGGAGAGGGAAACAGGGAGGACAGGGAGGACA  599

seq1  GGGACAGGGACAGGGAGAGGGAGACATAGGCCACACATGGTAAGCCTCCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGGGACAGGGAGAGGGAGACATAGGCCACACATGGTAAGCCTCCT  649

seq1  GTTTCCGTTCTTATTCTAGGGCAGAAAACTGTGAAATACAAACTAAAGTC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCGTTCTTATTCTAGGGCAGAAAACTGTGAAATACAAACTAAAGTC  699

seq1  AGGACAGACCTTGGTCAACCCAACACAGCCAGAGAACAGGCTGTAGGTCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGACCTTGGTCAACCCAACACAGCCAGAGAACAGGCTGTAGGTCA  749

seq1  CATGGAATTCC  753
      |||||||||||
seq2  CATGGAATTCC  760

seq1: chr12_15637149_15638152
seq2: B6Ng01-227M06.g_69_1077

seq1  GAATTCTCAGCTGTGTTAGGAGATAACTGGGGAAATGGTAGGCTTAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTGTGTTAGGAGATAACTGGGGAAATGGTAGGCTTAGGAG  50

seq1  GACAGCAGGGAGGATTTCTGTGTGTCCTAGAAGAATGCACTTCTCCCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGGGAGGATTTCTGTGTGTCCTAGAAGAATGCACTTCTCCCTCC  100

seq1  CCTCTCCCCCCCCCCCAAGTTCACTTTCTCCACCTGTAAAGCACTGGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCCCCCCCCCAAGTTCACTTTCTCCACCTGTAAAGCACTGGGCT  150

seq1  TCAAGAGATACTTGTGTTTTCTGAGTCTTCTAATATGTAAACAGCCACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGATACTTGTGTTTTCTGAGTCTTCTAATATGTAAACAGCCACAC  200

seq1  AAATCAAATAAATGTAAATGGTTGATAAATAGGCAAAGGAATAAAACCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAATAAATGTAAATGGTTGATAAATAGGCAAAGGAATAAAACCAA  250

seq1  AATTGATGGATGAACGTATAGATAGATAAAAGATGATATATGATACACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATGGATGAACGTATAGATAGATAAAAGATGATATATGATACACAT  300

seq1  ATATTATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA  350

seq1  TAATTAGGCAGAGAAATAATATATAGGTAGATGTATCTCTGTCTCTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGGCAGAGAAATAATATATAGGTAGATGTATCTCTGTCTCTCTTT  400

seq1  GTCTCTAAAGAGAGGCGATAGACAGACAGATGGACAGATAGATGATAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTAAAGAGAGGCGATAGACAGACAGATGGACAGATAGATGATAGAC  450

seq1  AGATGATAGGTAGTTAGATAGATTGATAGGTGATATAGATGAAAGATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATAGGTAGTTAGATAGATTGATAGGTGATATAGATGAAAGATAGA  500

seq1  TAGATAGATAGATAGACAGACAGATAGACAGATAGTTCCATTTAGTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATAGATAGACAGACAGATAGACAGATAGTTCCATTTAGTGAAA  550

seq1  AGAAGCAAACAAATCAGAGAAATTCCTTCTCCAGTCCAACCTGACCTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAAACAAATCAGAGAAATTCCTTCTCCAGTCCAACCTGACCTGAT  600

seq1  TGCAGGGCCTTTGTGCTAGTACACATCTTTTATAAATCATCCATGACATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGCCTTTGTGCTAGTACACATCTTTTATAAATCATCCATGACATC  650

seq1  CATGCCTCGGGCTACGTCTTCGGTATTCTGCTCTGCATCTCACTGACTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTCGGGCTACGTCTTCGGTATTCTGCTCTGCATCTCACTGACTTT  700

seq1  TACTCATCTCAAGTTCTCCCTGGGTTTTATTATAATCACACTGAAGACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATCTCAAGTTCTCCCTGGGTTTTATTATAATCACACTGAAGACAA  750

seq1  GAAGTATGTCAAGTCTATTATTTCTATCAGCTGCCTTCCTTCCTTATAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATGTCAAGTCTATTATTTCTATCAGCTGCCTTCCTTCCTTATAGG  800

seq1  CATGGGATGGG-TTGTAATGTTGTCACC-AATCTGAGTAGCATCTGTGTA  848
      ||||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  CATGGGATGGGTTTGTAATGTTGTCACCAAATCTGAGTAGCATCTGTGTA  850

seq1  TCTTTTTTCTTCTGA-CAGCTTTATGCTTAAACTG-TACTTTCATGTTGT  896
      ||||||||| ||||| ||||||||||||||||||| ||||||  ||||||
seq2  TCTTTTTTC-TCTGACCAGCTTTATGCTTAAACTGTTACTTTTCTGTTGT  899

seq1  ATTAAAGT-AGCACATAAAATCATTTCATCCTACTGGAAGATTGTTCCTT  945
      |||||||| ||||||||||||| |||||||||||||||||||||| | ||
seq2  ATTAAAGTAAGCACATAAAATCTTTTCATCCTACTGGAAGATTGTCCTTT  949

seq1  CTAAGCTGGCATGG-AGGTTCATGCCTGTGACTCTAGCTCTTGAGAGGCA  994
      ||||||||| |||| ||||||||||||||||||||||||| |||||| ||
seq2  CTAAGCTGGTATGGAAGGTTCATGCCTGTGACTCTAGCTCCTGAGAGTCA  999

seq1  GAGGCAATAG  1004
       |||||||||
seq2  AAGGCAATAG  1009