BAC Information

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BAC

Clone NameB6Ng01-228B11
Chromosome12 (Build37)
Map Location 34,687,682 - 34,868,179
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043109, 1110049B09Rik, Atxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801, LOC668806, Ferd3l, Twist1
Downstream geneHdac9, 4921508M14Rik, Prps1l1, Snx13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228B11.bB6Ng01-228B11.g
ACCGA041590GA041591
length2391,123
definitionB6Ng01-228B11.b B6Ng01-228B11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,867,944 - 34,868,179)(34,687,682 - 34,688,782)
sequence
tgtaaaccacagaacatttacttacagtccaattgctgacctttcttttt
ccttctttttctgtctacaaagttctctctttgagaagaaacataaagaa
taacattctctctggtgtgtgtgtgagtgtgtgagtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgcacgcatgtgtttttat
tggaatcctaaattttatttttagcctgggttttttgga

gaattcttcctttactcaggagtacatgaacatagcgctctggctgccga
atggcacagtaattctgtgctggtgattgagaatcccatgtgatcccacg
caattgaccattagaaagcattcactctcaggtacaaatatccagtagta
gcttgtttttactgactatttaatagtgtaattgattggggagctcacta
ataacatgcacaccaagatcatgttaaaaatacacaagttccataagact
ccatgcatggtaggaggagactgtagaagagtcataagtctatggaatac
aaatcacagttcttcttttctcatagtaataaccttgtgtagacgtcctc
agtaacttccttcctttcctgcagttagttcttatcacacctgcttggag
aattgggtagatgatgccagtctgaaagcattgaggcactggggtgatgg
tgcacaccttcaatcccagcagttgggaggcagaggaagatggatctctg
taagtttgaggccagtcagatttacatagtgagttctaggctagccagag
ctacaggacaaaactctgtctcaaaaagcaagcaaacaaacaaagaaaaa
agaaaataaaagaaggtgaaagaaaaaaaaaaaacagaaaacaggtctaa
atgaagtcactatttggtatattttatcaggcatcacattatccatgctt
ctaaaatattctcttggaagatgaaacttttatgggaattaggaaaggaa
agatgtgcaatttgggtgtggataattaaactagagcaagggaaagtgag
ccgaagagagactgacttcattttgtttgaaagaaagtgtttaaaacata
atgatgtccatgttttaatgttagcagaacaatgaacagagaagtttaaa
ttagtttctagtgtttagtcaccatttccagtaatccaaaccctttcttt
tccttgtttcatggtggaacaatccaagagtttttccggattagagacag
tgaccctggagcacggaattagatttagcatgacacagaagagaccatta
ttggtgcatgtcataaacaaggacaggtattaaattttagggcagtatgt
gactatactatggtaagaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_34867944_34868179
seq2: B6Ng01-228B11.b_51_288 (reverse)

seq1  CCAAAAGACCCTGGCTAAAAATTAAACTTAGGATTCCAATAAAATCACAT  50
      |||||| |||| |||||||||| ||| ||||||||||||||||| |||||
seq2  CCAAAAAACCCAGGCTAAAAATAAAATTTAGGATTCCAATAAAAACACAT  50

seq1  GCGTGCACTCACACACACACACACACACACACACACACACACACACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCACTCACACACACACACACACACACACACACACACACACACACAC  100

seq1  ACACTCACACACTCACACACACACCAGAGAGAATGTTATTCTTTATGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACACACTCACACACACACCAGAGAGAATGTTATTCTTTATGTTT  150

seq1  CTTCTCAAAGAGAGAACTTTGTAGACAGAAAAAGAAGGAAAAAGAAAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAAAGAGAGAACTTTGTAGACAGAAAAAGAAGGAAAAAGAAAGGT  200

seq1  CAGC--CTTCACTGTAAGTAAATGTTCTGTGGTTTACA  236
      ||||   |  ||||||||||||||||||||||||||||
seq2  CAGCAATTGGACTGTAAGTAAATGTTCTGTGGTTTACA  238


seq1: chr12_34687682_34688782
seq2: B6Ng01-228B11.g_69_1191

seq1  GAATTCTTCCTTTACTCAGGAGTACATGAACATAGCGCTCTGGCTGCCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTTTACTCAGGAGTACATGAACATAGCGCTCTGGCTGCCGA  50

seq1  ATGGCACAGTAATTCTGTGCTGGTGATTGAGAATCCCATGTGATCCCACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACAGTAATTCTGTGCTGGTGATTGAGAATCCCATGTGATCCCACG  100

seq1  CAATTGACCATTAGAAAGCATTCACTCTCAGGTACAAATATCCAGTAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGACCATTAGAAAGCATTCACTCTCAGGTACAAATATCCAGTAGTA  150

seq1  GCTTGTTTTTACTGACTATTTAATAGTGTAATTGATTGGGGAGCTCACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTTTTACTGACTATTTAATAGTGTAATTGATTGGGGAGCTCACTA  200

seq1  ATAACATGCACACCAAGATCATGTTAAAAATACACAAGTTCCATAAGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATGCACACCAAGATCATGTTAAAAATACACAAGTTCCATAAGACT  250

seq1  CCATGCATGGTAGGAGGAGACTGTAGAAGAGTCATAAGTCTATGGAATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCATGGTAGGAGGAGACTGTAGAAGAGTCATAAGTCTATGGAATAC  300

seq1  AAATCACAGTTCTTCTTTTCTCATAGTAATAACCTTGTGTAGACGTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACAGTTCTTCTTTTCTCATAGTAATAACCTTGTGTAGACGTCCTC  350

seq1  AGTAACTTCCTTCCTTTCCTGCAGTTAGTTCTTATCACACCTGCTTGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTTCCTTCCTTTCCTGCAGTTAGTTCTTATCACACCTGCTTGGAG  400

seq1  AATTGGGTAGATGATGCCAGTCTGAAAGCATTGAGGCACTGGGGTGATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGTAGATGATGCCAGTCTGAAAGCATTGAGGCACTGGGGTGATGG  450

seq1  TGCACACCTTCAATCCCAGCAGTTGGGAGGCAGAGGAAGATGGATCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACCTTCAATCCCAGCAGTTGGGAGGCAGAGGAAGATGGATCTCTG  500

seq1  TAAGTTTGAGGCCAGTCAGATTTACATAGTGAGTTCTAGGCTAGCCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTGAGGCCAGTCAGATTTACATAGTGAGTTCTAGGCTAGCCAGAG  550

seq1  CTACAGGACAAAACTCTGTCTCAAAAAGCAAGCAAACAAACAAAGAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGGACAAAACTCTGTCTCAAAAAGCAAGCAAACAAACAAAGAAAAA  600

seq1  AGAAAATAAAAGAAGGTGAAAGAAAAAAAAAAAACAGAAAACAGGTCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAAAAGAAGGTGAAAGAAAAAAAAAAAACAGAAAACAGGTCTAA  650

seq1  ATGAAGTCACTATTTGGTATATTTTATCAGGCATCACATTATCCATGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTCACTATTTGGTATATTTTATCAGGCATCACATTATCCATGCTT  700

seq1  CTAAAATATTCTCTTGGAAGATGAAACTTTTAT-GGAATTAGGAAAGGAA  749
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTAAAATATTCTCTTGGAAGATGAAACTTTTATGGGAATTAGGAAAGGAA  750

seq1  AGATGTGCAA-TTGGGTGTGGATAATTAAACTAGAGCAAGGGAAAGTGAG  798
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGCAATTTGGGTGTGGATAATTAAACTAGAGCAAGGGAAAGTGAG  800

seq1  CCGAAGAGAGACTGACTTCA-TTTGTTTG-AAGAAAGTGTTTAAAACATA  846
      |||||||||||||||||||| |||||||| ||||||||||||||||||||
seq2  CCGAAGAGAGACTGACTTCATTTTGTTTGAAAGAAAGTGTTTAAAACATA  850

seq1  ATGATGTCCATG-TTTAATGTTAGCAGAAC-ATGAACAGAGAAGTT--AA  892
      |||||||||||| ||||||||||||||||| |||||||||||||||  ||
seq2  ATGATGTCCATGTTTTAATGTTAGCAGAACAATGAACAGAGAAGTTTAAA  900

seq1  ATAG-TTCTAGTG-TTAGTCACCATTTCCAGTAATCCAAACCCT---CTT  937
       ||| |||||||| ||||||||||||||||||||||||||||||    ||
seq2  TTAGTTTCTAGTGTTTAGTCACCATTTCCAGTAATCCAAACCCTTTCTTT  950

seq1  TCCTTGTTTCAT-GTGG-ACAAT-CAAGAGTTTTCCCGGATTAGAGACAG  984
      |||||||||||| |||| ||||| |||||||||| |||||||||||||||
seq2  TCCTTGTTTCATGGTGGAACAATCCAAGAGTTTTTCCGGATTAGAGACAG  1000

seq1  TGACCCT-GAGCACGGAAATAGA-TTAGCATGACACAGAAGAGACCA-TA  1031
      ||||||| |||||||||| |||| ||||||||||||||||||||||| ||
seq2  TGACCCTGGAGCACGGAATTAGATTTAGCATGACACAGAAGAGACCATTA  1050

seq1  TT-GTGCATGTCATAAACAAGGACA-GTAATAAATTTTAGGGCAGTATGT  1079
      || |||||||||||||||||||||| ||| ||||||||||||||||||||
seq2  TTGGTGCATGTCATAAACAAGGACAGGTATTAAATTTTAGGGCAGTATGT  1100

seq1  GACTTATACTATG--TAGAAAAAA  1101
      ||| |||||||||   ||||||||
seq2  GAC-TATACTATGGTAAGAAAAAA  1123


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