BAC Information

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BAC

Clone NameB6Ng01-229H05
Chromosome12 (Build37)
Map Location 8,361,330 - 8,479,769
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668380, EG668388, Apob, 1110057K04Rik, Gdf7, Hs1bp3
Downstream geneBC106175, Rhob, Slc7a15, LOC100043154, Pum2, F730043H23, Sdc1, Laptm4a, Matn3, Wdr35, Ttc32, LOC633030, LOC100042238
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229H05.bB6Ng01-229H05.g
ACCGA042592GA042593
length1,0491,033
definitionB6Ng01-229H05.b B6Ng01-229H05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,478,732 - 8,479,769)(8,361,330 - 8,362,399)
sequence
ggaattcagagcaaaaaccaaatgaaacccagatacaagcaaccctggta
ggggcctgcttaactccatcacccaggttctgggcagtgttccagcccct
gtgtgaagcccaggctgaaccttccctctatttggagtaccagagccaag
tgccagtcttgactgatgggctgagctgtgcttcaaaacagaaaagccag
ctgcatcctgcggatggatggctacttccttctggtgttcaccaaagctc
acaggggcttttagatcagttacctcagctagagacctgggggcgtgggg
tgacagcgactgcttgctggtgctcctgggcgcatgtgcagtggattgct
ctctgctccataacttcaaaccagcatgtgaggtaacaagttttattcat
attttacagagggaaatatatatatatatatatgaagggatttaatgtct
cagcaaaaagagaaagattaaaaaaaaagcagaccttaaccggtcttcta
tcacagctaacctgtatttgctgccatacctaattatcctcacaaaagca
aacccgaaggtggaatgagccaaggccacaccctgagtttgacaaaacca
aggttactgtgccacactcttgcttacaatgccaaacatcccaccgtggc
tatgcaagacttcttcccctatccttggcctgatcttccttgaagataag
atttatgaagacacttgaccatggagttgccgtggtgcttgcttacagca
tccagtctgagccgactctgcctagtgtcctgtccaccctcacccttctc
ccaagtctgtctgatacccttttgctgagatcccctggtctgttctctcc
ctctccacccacatctctctccaataaataaatacttactcaggtacact
ttttgcttaagccccaaagttggcgatggattcatacctaggaatcatct
ttttttcttatcctagagtcctgcatattgggacctccctcctcccttct
tttaaagaatttattttattttatttcatgtaatgtgagtacaactgtc
gaattccatggagccaaagggtataacaaaaacatacaaatctgtcatat
gtggaaagcaagttaagaaagcaatcccaaataaaatactcagaaatgaa
ttaaccaagaaagttaaagacttatccactgaagaccattaaacatcatt
gatgggactgggaacatgatgagtcaacagcgaaggccagagttaagatc
ccaaacacccactgtgtttgtgggcatgatgacccacctgcaattctagc
cttggaaggcagagacaaggcatccccaggtgagctggccagggacaata
gctttattgaattcaattgtgatactctggattcaattgtgatactctgc
ttcaaaaaaaaaaaaaaaaagatagaggacaattaaggaagattcccaac
ataagccttggacttccatgtctcacacacaccacacacacatgaataca
catgtgcagcatatatacatacacataaaagaagatgagagaacgctgct
aaaagaaactaaagacccggggaaataaaaagacacgtgtagtcagtcat
gggttgaaagtcttaattaatactggtgctagagagttggctcagacatt
aagagcaccgttattcctgcagaggacccaggttcaattcccagcaccca
catggcagctcacaccatctatacctctagtcccaagtaatcctatgccc
tcttctggcctctgagggcactgcatgctcatggtgaccatacatacaat
acactcaggccaaacacttatacacataaaacaattcaataaagtaaatc
taaattttgtaagacttaatattgttagaaggcaataaccttcagtttga
tatctaggacaatgtcatccttatttagatcccagtacaaagaaagaaag
aaagaagatgaaagaagaaagaaagaagatgaaagaaggaggagagagag
aaagaaggaagaagagagagaggaggaggagagaagaggatgaacgacag
ctgatcttaactgtgcatgagcaggcacgacgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_8478732_8479769
seq2: B6Ng01-229H05.b_48_1095 (reverse)

seq1  GACAG-TGTACTCACA-TACATGAAATAAA--TAAATAAA-TCTTTAAAA  45
      ||||| |||||||||| |||||||||||||   ||||||| |||||||||
seq2  GACAGTTGTACTCACATTACATGAAATAAAATAAAATAAATTCTTTAAAA  50

seq1  AGAAGGAGGA-GGAGGTCCCAATATGCA-GACTCTAGGATAAG--AAAAA  91
        | |||||| ||||||||||||||||| ||||||||||||||  |||||
seq2  GAAGGGAGGAGGGAGGTCCCAATATGCAGGACTCTAGGATAAGAAAAAAA  100

seq1  GATGATTCCTAGGTATGAATCCATCGCCAACTTTGGGGCTTAAGC-AAAA  140
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GATGATTCCTAGGTATGAATCCATCGCCAACTTTGGGGCTTAAGCAAAAA  150

seq1  GTGTACCTGAGTAAGTATTTATTTATTGGAGAGAGATGTGGGTGGAGAGG  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACCTGAGTAAGTATTTATTTATTGGAGAGAGATGTGGGTGGAGAGG  200

seq1  GAGAGAACAGACCAGGGGATCTCAGCAAAAGGGTATCAGACAGACTTGGG  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAACAGACCAGGGGATCTCAGCAAAAGGGTATCAGACAGACTTGGG  250

seq1  AGAAGGGTGAGGGTGGACAGGACACTAGGCAGAGTCGGCTCAGACTGGAT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGTGAGGGTGGACAGGACACTAGGCAGAGTCGGCTCAGACTGGAT  300

seq1  GCTGTAAGCAAGCACCACGGCAACTCCATGGTCAAGTGTCTTCATAAATC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAAGCAAGCACCACGGCAACTCCATGGTCAAGTGTCTTCATAAATC  350

seq1  TTATCTTCAAGGAAGATCAGGCCAAGGATAGGGGAAGAAGTCTTGCATAG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTCAAGGAAGATCAGGCCAAGGATAGGGGAAGAAGTCTTGCATAG  400

seq1  CCACGGTGGGATGTTTGGCATTGTAAGCAAGAGTGTGGCACAGTAACCTT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGTGGGATGTTTGGCATTGTAAGCAAGAGTGTGGCACAGTAACCTT  450

seq1  GGTTTTGTCAAACTCAGGGTGTGGCCTTGGCTCATTCCACCTTCGGGTTT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGTCAAACTCAGGGTGTGGCCTTGGCTCATTCCACCTTCGGGTTT  500

seq1  GCTTTTGTGAGGATAATTAGGTATGGCAGCAAATACAGGTTAGCTGTGAT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGTGAGGATAATTAGGTATGGCAGCAAATACAGGTTAGCTGTGAT  550

seq1  AGAAGACCGGTTAAGGTCTGCTTTTTTTTTAATCTTTCTCTTTTTGCTGA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACCGGTTAAGGTCTGCTTTTTTTTTAATCTTTCTCTTTTTGCTGA  600

seq1  GACATTAAATCCCTTCATATATATATATATATATTTCCCTCTGTAAAATA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTAAATCCCTTCATATATATATATATATATTTCCCTCTGTAAAATA  650

seq1  TGAATAAAACTTGTTACCTCACATGCTGGTTTGAAGTTATGGAGCAGAGA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAAACTTGTTACCTCACATGCTGGTTTGAAGTTATGGAGCAGAGA  700

seq1  GCAATCCACTGCACATGCGCCCAGGAGCACCAGCAAGCAGTCGCTGTCAC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCCACTGCACATGCGCCCAGGAGCACCAGCAAGCAGTCGCTGTCAC  750

seq1  CCCACGCCCCCAGGTCTCTAGCTGAGGTAACTGATCTAAAAGCCCCTGTG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGCCCCCAGGTCTCTAGCTGAGGTAACTGATCTAAAAGCCCCTGTG  800

seq1  AGCTTTGGTGAACACCAGAAGGAAGTAGCCATCCATCCGCAGGATGCAGC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGGTGAACACCAGAAGGAAGTAGCCATCCATCCGCAGGATGCAGC  850

seq1  TGGCTTTTCTGTTTTGAAGCACAGCTCAGCCCATCAGTCAAGACTGGCAC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTCTGTTTTGAAGCACAGCTCAGCCCATCAGTCAAGACTGGCAC  900

seq1  TTGGCTCTGGTACTCCAAATAGAGGGAAGGTTCAGCCTGGGCTTCACACA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCTGGTACTCCAAATAGAGGGAAGGTTCAGCCTGGGCTTCACACA  950

seq1  GGGGCTGGAACACTGCCCAGAACCTGGGTGATGGAGTTAAGCAGGCCCCT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGGAACACTGCCCAGAACCTGGGTGATGGAGTTAAGCAGGCCCCT  1000

seq1  ACCAGGGTTGCTTGTATCTGGGTTTCATTTGGTTTTTGCTCTGAATTC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGTTGCTTGTATCTGGGTTTCATTTGGTTTTTGCTCTGAATTC  1048

seq1: chr12_8361330_8362399
seq2: B6Ng01-229H05.g_65_1097

seq1  GAATTCCATGGAGCCAAAGGGTATAACAAAAACATACAAATCTGTCATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGAGCCAAAGGGTATAACAAAAACATACAAATCTGTCATAT  50

seq1  GTGGAAAGCAAGTTAAGAAAGCAATCCCAAATAAAATACTCAGAAATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAGCAAGTTAAGAAAGCAATCCCAAATAAAATACTCAGAAATGAA  100

seq1  TTAACCAAGAAAGTTAAAGACTTATCCACTGAAGACCATTAAACATCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCAAGAAAGTTAAAGACTTATCCACTGAAGACCATTAAACATCATT  150

seq1  GATGGGACTGGGAACATGATGAGTCAACAGCGAAGGCCAGAGTTAAGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGACTGGGAACATGATGAGTCAACAGCGAAGGCCAGAGTTAAGATC  200

seq1  CCAAACACCCACTGTGTTTGTGGGCATGATGACCCACCTGCAATTCTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACACCCACTGTGTTTGTGGGCATGATGACCCACCTGCAATTCTAGC  250

seq1  CTTGGAAGGCAGAGACAAGGCATCCCCAGGTGAGCTGGCCAGGGACAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAGGCAGAGACAAGGCATCCCCAGGTGAGCTGGCCAGGGACAATA  300

seq1  GCTTTATTGAATTCAATTGTGATACTCTGGATTCAATTGTGATACTCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATTGAATTCAATTGTGATACTCTGGATTCAATTGTGATACTCTGC  350

seq1  TTCAAAAAAAAAAAAAAAAAGATAGAGGACAATTAAGGAAGATTCCCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAAAAAAAAAAAAAAGATAGAGGACAATTAAGGAAGATTCCCAAC  400

seq1  ATAAGCCTTGGACTTCCATGTCTCACACACACCACACACACATGAATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCCTTGGACTTCCATGTCTCACACACACCACACACACATGAATACA  450

seq1  CATGTGCAGCATATATACATACACATAAAAGAAGATGAGAGAACGCTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCAGCATATATACATACACATAAAAGAAGATGAGAGAACGCTGCT  500

seq1  AAAAGAAACTAAAGACCCGGGGAAATAAAAAGACACGTGTAGTCAGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAACTAAAGACCCGGGGAAATAAAAAGACACGTGTAGTCAGTCAT  550

seq1  GGGTTGAAAGTCTTAATTAATACTGGTGCTAGAGAGTTGGCTCAGACATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGAAAGTCTTAATTAATACTGGTGCTAGAGAGTTGGCTCAGACATT  600

seq1  AAGAGCACCGTTATTCCTGCAGAGGACCCAGGTTCAATTCCCAGCACCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCACCGTTATTCCTGCAGAGGACCCAGGTTCAATTCCCAGCACCCA  650

seq1  CATGGCAGCTCACACCATCTATACCTCTAGTCCCAAGTAATCCTATGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAGCTCACACCATCTATACCTCTAGTCCCAAGTAATCCTATGCCC  700

seq1  TCTTCTGGCCTCTGAGGGCACTGCATGCTCATGGTGACCATACATACAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGCCTCTGAGGGCACTGCATGCTCATGGTGACCATACATACAAT  750

seq1  ACACTCAGGCCAAACACTTATACACATAAAACAATTCAATAAAGTAAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAGGCCAAACACTTATACACATAAAACAATTCAATAAAGTAAATC  800

seq1  TAAATTTTGTAAGACTTAATATTGTTAGAAGGCAATAACCTTCAGTTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTGTAAGACTTAATATTGTTAGAAGGCAATAACCTTCAGTTTGA  850

seq1  TATCTAGGACAATGTCATCCTTATTTAGATCCCAGTAACAAAGAAAGAAA  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TATCTAGGACAATGTCATCCTTATTTAGATCCCAGT-ACAAAGAAAGAAA  899

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGG  950
      |||||||           | ||||| |||||||||||||        | |
seq2  GAAAGAA----------GATGAAAG-AAGAAAGAAAGAA-------GATG  931

seq1  AAGGAAGGAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA  1000
      || |||||| || ||| | ||| ||||||| ||||  ||  ||| |||| 
seq2  AAAGAAGGAGGAGAGAGA-GAAAGAAGGAA-GAAGAGAGAGAGG-AGGAG  978

seq1  GGAAGAAGGAAAGGAAGGAATAGAAACAGACAAGCTGATCTTAAACTGTG  1050
      |  |||||   |||| |       ||| ||| |||||||||| |||||||
seq2  GAGAGAAG---AGGATG-------AAC-GAC-AGCTGATCTT-AACTGTG  1015

seq1  CATGGAGCCAGGCACGACGC  1070
      ||| ||| ||||||||||||
seq2  CAT-GAG-CAGGCACGACGC  1033