BAC Information

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BAC

Clone NameB6Ng01-230F18
Chromosome12 (Build37)
Map Location 49,646,970 - 49,648,172
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664891
Downstream geneGm1818, GA_x5J8B7W54VK-284379-285078, Olfr1399-ps1, EG665036, LOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230F18.bB6Ng01-230F18.g
ACCGA043242GA043243
length1,2021,131
definitionB6Ng01-230F18.b B6Ng01-230F18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaactaatgaccccagttagatattgcgatcatagccaagtccta
ccatagctacactgcctttgttttaatcctaataacacttcacatggtct
cttgtctgaagacatctctgattaaccatctgtcagtctatattctacta
taatattgtacaggaatcaacatttactcccatttgtctgatgtctcata
catgacagatattaaggagttagtgccgatggactgcttatagataactg
agcaacaaaaatgtatagaaaaattggctcttatttcaagtacaccttta
attacatcctgtttgtcttgtggaaagtgtgtcagaatctcaaaaatatt
gtttagattgcctggtcagactgtctacttctgtctgcagatggtcaaca
aacaatggtaagtcattgcctgcacaaaaacacacctcacaagagccaac
tctttctcagaatattaacagaaactctttgcatagtttgacacaatttc
aaacacagagcaacacaaggtatatgttatctggcaaggcaatatactgg
ccatagacaaagagcaaagatgaaagttcccagtagcttctgtcattttt
attcctgaaatttccctgtctttccagttcagcttttatgagctgccatt
tacctgtccttggtaaaacagaaaaatgagtttggactttgtttggattc
ttgagaaaatctgacacttggtaatctctctctccaattgttgggctcta
ggcaatgcattccaatctgcctttatacttttgagcaatttggggtccat
tttgggcagctgaaatttgatgactgattttgtcttttggggttcttctg
ttgaacaatttaggctattgtgcttaaaggaactggccataatatagtaa
tactgtgatttgccagaaaagacatgttacggtaaaagttctttgaggag
gtctgttgaactatttgaaatacttgtgacaggaaatatttgagggtttt
atgagtccttgggatcctgttaactgcattaattggagacatagagctga
gaagatctctctgagattttatgtaaccatgcaatgttggccttcactct
attggtatcactggagatgaataaattaattaggtaatatagtcctgagg
gcaccttccagacgcttatagttttggaagaggtatttggctgtggtttt
aa
gaattccaagcccagggttggctcaaggactacctagggcattggtgagg
gtcaggaagcaaagtttgattttgcttaggtatttggcaagtcattgctt
ggagatacctttaataaaacaatactgggggaaagcacacagatccatcc
gtaaggacattataggaccattcgttatacaggatgccatggttccagga
gactaagtttccatgaactttttgcctccggactgcgttcagtcttttgg
acttgtcaccctgtcacgcatattgctactggagtggatgtagcaccttg
ttgattttcccaatgaaccagctcttggttttgattctttttatttttct
ctttgtttcagattgattggtttaagctctgagtttgactatttcctgct
gtctactcatcttgggtgtttacttcttttttgttctcgacatttcaagt
atgctgttaagatactagtaaaagatctctaattctttatgattatactt
agtactttgaaattttctcttaacattgctttcattgtgtcctatatgtt
tggtgccttcatttgcattgaattgtagaaagtcgttaacttcattattt
cttccatatccatgggatcactgagtacagagctgacccatttacatgag
tatgtttgctttctgttgtttctgttgtcattgaagtccagccttattcc
ttggtgatctgatagaatgcatggggctatttcaaccatcttgtatctgt
taaggcttgctttgggcactgttatatgattttggagaaagtaatgagag
gtgctgaaaagaggttatagtcttttgttttcaagtaaaaggttctatta
gacatctcttaaatccatttggttcataaacatctgttacattcactgtt
tctctgtttagtgagaatggagtgtgaagtatcccatgtattagcgttta
gagttcaatgtgtgatttcagccttagtatgtgggttttttttttcttct
tttttgtctaatggaatgactttgaatttggggcctagaaaatcagaaat
tgagggggacatctttgtggaattttcctatgaaggaatgagattccagc
acatttcttctgaatcattgatggaaagcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_49646970_49648172
seq2: B6Ng01-230F18.b_45_1246

seq1  GAATTCAACTAATGACCCAGAGTTAGATATTGTGATCATAGCCAAGTCCT  50
      ||||||||||||||||||  |||||||||||| |||||||||||||||||
seq2  GAATTCAACTAATGACCC-CAGTTAGATATTGCGATCATAGCCAAGTCCT  49

seq1  ACCATAGCTACACTGCCTTTGTTTTAATCCTAATAACACTTCACATGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGCTACACTGCCTTTGTTTTAATCCTAATAACACTTCACATGGTC  99

seq1  TCTTGTCTGAAGACATCTCTGATTAACCATCTGTCAGTCTATATTCTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCTGAAGACATCTCTGATTAACCATCTGTCAGTCTATATTCTACT  149

seq1  ATAATATTGTACAGGAATCAACATTTACTCCCATTTGTCTGATGTCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATTGTACAGGAATCAACATTTACTCCCATTTGTCTGATGTCTCAT  199

seq1  ACATGACAGATATTAAGGAGTTAGTGCCGATGGACTGCTTATAGATAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACAGATATTAAGGAGTTAGTGCCGATGGACTGCTTATAGATAACT  249

seq1  GAGCAACAAAAATGTATAGAAAAATTGGCTCTTATTTCAAGTACACCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAACAAAAATGTATAGAAAAATTGGCTCTTATTTCAAGTACACCTTT  299

seq1  AATTACATCCTGTTTGTCTTGTGGAAAGTGTGTCAGAATCTCAAAAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACATCCTGTTTGTCTTGTGGAAAGTGTGTCAGAATCTCAAAAATAT  349

seq1  TGTTTAGATTGCCTGGTCAGACTGTCTACTTCTGTCTGCAGATGGTCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGATTGCCTGGTCAGACTGTCTACTTCTGTCTGCAGATGGTCAAC  399

seq1  AAACAATGGTAAGTCATTGCCTGCACAAAAACACACCTCACAAGAGCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATGGTAAGTCATTGCCTGCACAAAAACACACCTCACAAGAGCCAA  449

seq1  CTCTTTCTCAGAATATTAACAGAAACTCTTTGCATAGTTTGACACAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTCAGAATATTAACAGAAACTCTTTGCATAGTTTGACACAATTT  499

seq1  CAAACACAGAGCAACACAAGGTATATGTTATCTGGCAAGGCAATATACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACAGAGCAACACAAGGTATATGTTATCTGGCAAGGCAATATACTG  549

seq1  GCCATAGACAAAGAGCAAAGATGAAAGTTCCCAGTAGCTTCTGTCATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAGACAAAGAGCAAAGATGAAAGTTCCCAGTAGCTTCTGTCATTTT  599

seq1  TATTCCTGAAATTTCCCTGTCTTTCCAGTTCAGCTTTTATGAGCTGCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTGAAATTTCCCTGTCTTTCCAGTTCAGCTTTTATGAGCTGCCAT  649

seq1  TTACCTGTCCTTGGTAAAACAGAAAAATGAGTTTGGACTTTGTTTGGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGTCCTTGGTAAAACAGAAAAATGAGTTTGGACTTTGTTTGGATT  699

seq1  CTTGAGAAAATCTGACACTTGGTAATCTCTCTCTCCAATTGTTGGGCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAAAATCTGACACTTGGTAATCTCTCTCTCCAATTGTTGGGCTCT  749

seq1  AGGCAATGCATTCCAATCTGCCTTTATACTTTTGAGCAATTTGGGGTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATGCATTCCAATCTGCCTTTATACTTTTGAGCAATTTGGGGTCCA  799

seq1  TTTTGGGCAGCTGAAATTTGATGACTGATTTTGTCTTTTGGGGTTCTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGCAGCTGAAATTTGATGACTGATTTTGTCTTTTGGGGTTCTTCT  849

seq1  GTTGAACAATTTAGGCTATTGTGCTTAAAGGAACTGGCCATAATATAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAACAATTTAGGCTATTGTGCTTAAAGGAACTGGCCATAATATAGTA  899

seq1  ATACTGTGATTTGCCAGAAAAGACATGTTACGGTAAAAGTTCTTTTGAGG  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATACTGTGATTTGCCAGAAAAGACATGTTACGGTAAAAGTTC-TTTGAGG  948

seq1  AGGTCTGTTGAACTATTTGAAATACTTGTGACAGGAAATATTTGAGGGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGTTGAACTATTTGAAATACTTGTGACAGGAAATATTTGAGGGTT  998

seq1  TTATTGAGTCCTTGGGATCCTGTTAAACTGCATTAAATTTGGAGACAATA  1050
      ||| |||||||||||||||||||| |||||||||||  |||||||| |||
seq2  TTA-TGAGTCCTTGGGATCCTGTT-AACTGCATTAA--TTGGAGAC-ATA  1043

seq1  GAGCTGAGAAGATCTCTCCTGAGA-TTTATGTAACCATGGAAATGTT-GC  1098
      ||||||||||||||||| |||||| ||||||||||||| | |||||| ||
seq2  GAGCTGAGAAGATCTCT-CTGAGATTTTATGTAACCAT-GCAATGTTGGC  1091

seq1  CTTCACTCTATTGGTATCACTGGAGATGAATTAAATTAATTA-GTATTTA  1147
      |||||||||||||||||||||||||||||| ||||||||||| ||| |  
seq2  CTTCACTCTATTGGTATCACTGGAGATGAA-TAAATTAATTAGGTAAT--  1138

seq1  ATAGTCCTGAAATGCACCTT-CAGACGC-TATAGTTT----GGATGTATT  1191
      ||||||||| |  ||||||| ||||||| ||||||||     || |||||
seq2  ATAGTCCTG-AGGGCACCTTCCAGACGCTTATAGTTTTGGAAGAGGTATT  1187

seq1  TG---TTTGTTTTAA  1203
      ||    | |||||||
seq2  TGGCTGTGGTTTTAA  1202