BAC Information

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BAC

Clone NameB6Ng01-230I01
Chromosome12 (Build37)
Map Location 101,102,940 - 101,252,402
singlet/doubletdoublet
Overlap gene2610021K21Rik, Tdp1, LOC100040041, Kcnk13
Upstream geneEml5, LOC100039845, Ttc8, EG667779, Ches1, LOC100039892
Downstream genePsmc1, BC002230, Calm1, Ttc7b, Rps6ka5, LOC100040123, 9030617O03Rik, EG667148, Gpr68, 0610010D24Rik, LOC100040184
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230I01.bB6Ng01-230I01.g
ACCGA043351GA043352
length3091,197
definitionB6Ng01-230I01.b B6Ng01-230I01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,252,094 - 101,252,402)(101,102,940 - 101,104,114)
sequence
catactgtattcagattttctttgcttttacccagtgtcattcctctgta
tcaggattccattctggatgctgtgtcgcattacttatttatttatttat
ttatttaatatatatgagtacacagtagctgtcttcagacacaccagaag
agggcatcagatcccattacagatggttgtgagccaccatgtggttgctg
ggaattgacctcaggacctctggaaaagcagttagtgttcttaattgctg
agccatctctccagcccattgtattttatttttaacccgtgtgtgtgcgg
tgtgtgtgt
gaattctttgtccctcccatgcctccatatcctcctccctggaccatatt
ctataaaaagaactgggataaaaatgaagataactgtgtgaaggaggact
cagaggaacactgggttcttatctgtagtgtttacttaacatacagtgag
caagagcaccataaaatttatatgctgctatttatgcaatttatacttgt
ttatcctgcaatggtacagatcatctgggagtcctgtattcaggcaagac
agtctttgactttcatagagctatgctgacatgaacctacactgtagaaa
ctaagggacaaccatgaaactcactgctgtgtgcactcaccggtctatgg
actgggctatccatccagcagcctctctccgataagacagcatgcaagac
ctctcccaggcctggggttggcctgcctacaaggttttgactgtgtgcgc
actgaccattccacttttttttctatctgctctggatgctgggattcaga
acaaactctgaaacccgcgactactgatagagaacctgttgatttgccat
ttgtaaactgacaccgttcccgatttcaactcgttgtgttccttagggca
gtgaacaccagacttggtcctgctgtaatcataaacatgatccacggcac
tattgaaaatcaatggcaatgagagcaaggctgcagggcagatggcactg
gtccgctccttactagccagctgtggcattctgtgtaaatgacttaactt
ctttaggcttcatatttttcacttctcaaagggggagctttgataagatc
ataaagttgattatatagctactacgtaatgctcagcacagatctgcata
taactgttcaagaaatgatacctgaaattattgtctatgaagtcatagat
gatgtcgcacatacaaacgtctcttataaagagttgtacaaatgagaggt
tctgttctgttcctcttctcttccgtatcagtctccccatgttagaatag
ggaacaggtgggtgtttctaggtctctttccacttgccaaatttctttca
cccagtgtgtgcttgagaaaaagctggtgaacttaagttctctgaattga
ggaaggtctgtataaccggcatccagtctctacttggagaaatcttgtac
acttaactacaggacctgaccttgtgtttctcatgtaccttgtgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_101252094_101252402
seq2: B6Ng01-230I01.b_54_362 (reverse)

seq1  ACACACACACCGCACACACACGGGTTAAAAATAAAATACAATGGGCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACCGCACACACACGGGTTAAAAATAAAATACAATGGGCTGGA  50

seq1  GAGATGGCTCAGCAATTAAGAACACTAACTGCTTTTCCAGAGGTCCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTCAGCAATTAAGAACACTAACTGCTTTTCCAGAGGTCCTGAG  100

seq1  GTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATC  150

seq1  TGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACTGTGTACTCATATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACTGTGTACTCATATAT  200

seq1  ATTAAATAAATAAATAAATAAATAAGTAATGCGACACAGCATCCAGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATAAATAAATAAATAAATAAGTAATGCGACACAGCATCCAGAATG  250

seq1  GAATCCTGATACAGAGGAATGACACTGGGTAAAAGCAAAGAAAATCTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTGATACAGAGGAATGACACTGGGTAAAAGCAAAGAAAATCTGAA  300

seq1  TACAGTATG  309
      |||||||||
seq2  TACAGTATG  309

seq1: chr12_101102940_101104114
seq2: B6Ng01-230I01.g_69_1265

seq1  GAATTCTTTGTCCCTCCCATGCCTCCATATCCTCCTCCCTGGACCATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTCCCTCCCATGCCTCCATATCCTCCTCCCTGGACCATATT  50

seq1  CTATAAAAAGAACTGGGATAAAAATGAAGATAACTGTGTGAAGGAGGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAAAGAACTGGGATAAAAATGAAGATAACTGTGTGAAGGAGGACT  100

seq1  CAGAGGAACACTGGGTTCTTATCTGTAGTGTTTACTTAACATACAGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAACACTGGGTTCTTATCTGTAGTGTTTACTTAACATACAGTGAG  150

seq1  CAAGAGCACCATAAAATTTATATGCTGCTATTTATGCAATTTATACTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCACCATAAAATTTATATGCTGCTATTTATGCAATTTATACTTGT  200

seq1  TTATCCTGCAATGGTACAGATCATCTGGGAGTCCTGTATTCAGGCAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTGCAATGGTACAGATCATCTGGGAGTCCTGTATTCAGGCAAGAC  250

seq1  AGTCTTTGACTTTCATAGAGCTATGCTGACATGAACCTACACTGTAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTGACTTTCATAGAGCTATGCTGACATGAACCTACACTGTAGAAA  300

seq1  CTAAGGGACAACCATGAAACTCACTGCTGTGTGCACTCACCGGTCTATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGGACAACCATGAAACTCACTGCTGTGTGCACTCACCGGTCTATGG  350

seq1  ACTGGGCTATCCATCCAGCAGCCTCTCTCCGATAAGACAGCATGCAAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCTATCCATCCAGCAGCCTCTCTCCGATAAGACAGCATGCAAGAC  400

seq1  CTCTCCCAGGCCTGGGGTTGGCCTGCCTACAAGGTTTTGACTGTGTGCGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCAGGCCTGGGGTTGGCCTGCCTACAAGGTTTTGACTGTGTGCGC  450

seq1  ACTGACCATTCCACTTTTTTTTCTATCTGCTCTGGATGCTGGGATTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCATTCCACTTTTTTTTCTATCTGCTCTGGATGCTGGGATTCAGA  500

seq1  ACAAACTCTGAAACCCGCGACTACTGATAGAGAACCTGTTGATTTGCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTCTGAAACCCGCGACTACTGATAGAGAACCTGTTGATTTGCCAT  550

seq1  TTGTAAACTGACACCGTTCCCGATTTCAACTCGTTGTGTTCCTTAGGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAACTGACACCGTTCCCGATTTCAACTCGTTGTGTTCCTTAGGGCA  600

seq1  GTGAACACCAGACTTGGTCCTGCTGTAATCATAAACATGATCCACGGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACACCAGACTTGGTCCTGCTGTAATCATAAACATGATCCACGGCAC  650

seq1  TATTGAAAATCAATGGCAATGAGAGCAAGGCTGCAGGGCAGATGGCACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAAATCAATGGCAATGAGAGCAAGGCTGCAGGGCAGATGGCACTG  700

seq1  GTCCGCTCCTTACTAGCCAGCTGTGGCATTCTGTGTAAATGACTTAACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGCTCCTTACTAGCCAGCTGTGGCATTCTGTGTAAATGACTTAACTT  750

seq1  CTTTAGGCTTCATATTTTTCACTTCTCAAAGGGGGAGCTTTGATAAGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGCTTCATATTTTTCACTTCTCAAAGGGGGAGCTTTGATAAGATC  800

seq1  ATAAAGTTGATTATATAGCTACTACGTAATGCTCAGCACAGATCTGCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTTGATTATATAGCTACTACGTAATGCTCAGCACAGATCTGCATA  850

seq1  TAACTGTTCAAGAAATGATACCTGAAATTATTGTCTATGAAGTCATAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTTCAAGAAATGATACCTGAAATTATTGTCTATGAAGTCATAGAT  900

seq1  GATGTCGCACATACAAACGTCTCTTATAAAGAGTTGTACAAATGAGAGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCGCACATACAAACGTCTCTTATAAAGAGTTGTACAAATGAGAGGT  950

seq1  TCTGTTCTGTT-CTCTTCTCTTCCGTATCAGTCTCCCCATGTTAGAATAG  999
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTGTTCCTCTTCTCTTCCGTATCAGTCTCCCCATGTTAGAATAG  1000

seq1  GGAACAGGTGGGTGTTTCTAGGTCTC-TTCCACTTGCC-AATTTCTTTCA  1047
      |||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  GGAACAGGTGGGTGTTTCTAGGTCTCTTTCCACTTGCCAAATTTCTTTCA  1050

seq1  -CCAGTGTG---CTGAG-AAAAGCT-GTGAAC-TAAGTCCTCTG-AGTGA  1089
       ||||||||    |||| ||||||| |||||| ||||| ||||| | |||
seq2  CCCAGTGTGTGCTTGAGAAAAAGCTGGTGAACTTAAGTTCTCTGAATTGA  1100

seq1  GGAA-GCCTGTAT-ACCGGCAT-CAGTCTC-AC-TGGAG--ATC-TGT-C  1130
      |||| | |||||| |||||||| ||||||| || |||||  ||| ||| |
seq2  GGAAGGTCTGTATAACCGGCATCCAGTCTCTACTTGGAGAAATCTTGTAC  1150

seq1  ACTTAACTACACGGCCTGACTTTGT-TTTCTCCATGT-CCTT-TGTCT  1175
      ||||||||||| | |||||| |||| ||||| ||||| |||| |||||
seq2  ACTTAACTACAGGACCTGACCTTGTGTTTCT-CATGTACCTTGTGTCT  1197