BAC Information

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BAC

Clone NameB6Ng01-231F02
Chromosome12 (Build37)
Map Location 37,820,326 - 37,821,141
singlet/doubletsinglet
Overlap genenone
Upstream geneBzw2, Ankmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik, LOC638858
Downstream geneMeox2, A530016O06Rik, LOC100043139, Dgkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231F02.bB6Ng01-231F02.g
ACCGA043949GA043950
length1,1601,122
definitionB6Ng01-231F02.b B6Ng01-231F02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcaactgagaagtactgaagatatgagaagcacctgaaaaaatg
ttcaacatccttaaccatcagggaaacgcaaatcaaaacaaacttgagat
tccatctcacaccaatcagaatggctaagataaaaaaaatttaggtgaca
gcagatgctggtgaggatatagagaaagaggaacactcctccattgctgg
tgggattgcaagcttgtacaaccactctggaagtcagtctggcagttccc
cagaaaatttgacatagtactactggaagatccacaatacctctcctgga
catatacccagaagaaggtccaactgataataaggatacatgctccacta
tgttcatagcagcactatttataatagacagaagctgggaagaacgcaga
tgtccctcaacagaggaatggataaaaaaatgtggtacatttacacaatg
gagtactacttagctattaaaaggaatgaatttatgaaattcttgggcaa
atggatgtatctggaggatatcatcccgagtgaggtaacccaatcacaaa
agaagtcacttgatatgcactcactgataagtgggtattagctcagaaac
ttagaatacccaagatacaatttgcaaaacacaagaaaatcaagaagaag
gaagaccaacgtgtggatacttcattcctccttagaatagggaataaaat
acccatggaaggagttacaaagacaaagtttggagctaagaggaaaggat
ggaccatccagagactaccgcatctggggatccatcccataatcagccac
caaatccagacactattgcatatgccaacaagtttttcaactttttaaga
gaatgtttcttctgttatacttcagcaagttgaatgttcttatttttgca
ttgttattttagtctaatgcattgctcacgtatcagtaatttgataaaaa
aaaaatgtagcactgagttttgtctgagatttttatgaaatatctgagtt
ttgaacttctttacatctgtactttaaccacactgcagctcctacctcat
agaacatggagggtgtcatacgagactgatttcctctttgtcatacttta
gtaacacaacacctctactgcctttgaccccccccacttaaagataagcc
ctacgtttac

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagatgatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
aagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtggaaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggactatgtagagactgccttatccagggatccaccccataatc
agcatccaaacactgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgcccacagtcagctaatggatggatcacagggctccca
atggaggaggtagagaaagtacccaagagctaaagggatctgcaacccta
taggtggatcaacatattgactaccagtacccgaagctcttgactctagc
ttgacaatgtatcaaaagaatgactagttcgcatcactgtaaagagaggc
catggacaccacaaaccttaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_37820326_37821141
seq2: B6Ng01-231F02.b_387_1205

seq1  GCTCCACTATGTTCATAGCAGCACTATTTATAATAGACAGAAGCTGGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCACTATGTTCATAGCAGCACTATTTATAATAGACAGAAGCTGGGAA  50

seq1  GAACGCAGATGTCCCTCAACAGAGGAATGGATAAAAAAATGTGGTACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGCAGATGTCCCTCAACAGAGGAATGGATAAAAAAATGTGGTACATT  100

seq1  TACACAATGGAGTACTACTTAGCTATTAAAAGGAATGAATTTATGAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAATGGAGTACTACTTAGCTATTAAAAGGAATGAATTTATGAAATT  150

seq1  CTTGGGCAAATGGATGTATCTGGAGGATATCATCCCGAGTGAGGTAACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCAAATGGATGTATCTGGAGGATATCATCCCGAGTGAGGTAACCC  200

seq1  AATCACAAAAGAAGTCACTTGATATGCACTCACTGATAAGTGGGTATTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAAAAGAAGTCACTTGATATGCACTCACTGATAAGTGGGTATTAG  250

seq1  CTCAGAAACTTAGAATACCCAAGATACAATTTGCAAAACACAAGAAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAACTTAGAATACCCAAGATACAATTTGCAAAACACAAGAAAATC  300

seq1  AAGAAGAAGGAAGACCAACGTGTGGATACTTCATTCCTCCTTAGAATAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGGAAGACCAACGTGTGGATACTTCATTCCTCCTTAGAATAGG  350

seq1  GAATAAAATACCCATGGAAGGAGTTACAAAGACAAAGTTTGGAGCTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAATACCCATGGAAGGAGTTACAAAGACAAAGTTTGGAGCTAAGA  400

seq1  GGAAAGGATGGACCATCCAGAGACTACCGCATCTGGGGATCCATCCCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGATGGACCATCCAGAGACTACCGCATCTGGGGATCCATCCCATA  450

seq1  ATCAGCCACCAAATCCAGACACTATTGCATATGCCAACAAGTTTTTCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCACCAAATCCAGACACTATTGCATATGCCAACAAGTTTTTCAAC  500

seq1  TTTTTAAGAGAATGTTTCTTCTGTTATACTTCAGCAAGTTGAATGTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGAGAATGTTTCTTCTGTTATACTTCAGCAAGTTGAATGTTCTT  550

seq1  ATTTTTGCATTGTTATTTTAGTCTAATGCATTGCTCACGTATCAGTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGCATTGTTATTTTAGTCTAATGCATTGCTCACGTATCAGTAATT  600

seq1  TGAT-AAAAAAAAATGTAGCACTGAGTTTTGTCTGAGA-TTTTATGAAAT  648
      |||| ||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGATAAAAAAAAAATGTAGCACTGAGTTTTGTCTGAGATTTTTATGAAAT  650

seq1  AATCTGAGTTTTGAAC-TCTTTACATCTGTACTTTAACCACACTGCAGCT  697
       ||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  -ATCTGAGTTTTGAACTTCTTTACATCTGTACTTTAACCACACTGCAGCT  699

seq1  CCTACCTCATAGACAATGGAGGGTGTCATACGAGACTGAATTTCTCCTTG  747
      |||||||||||||  |||||||||||||||||||||||| || ||| |||
seq2  CCTACCTCATAGAACATGGAGGGTGTCATACGAGACTGATTTCCTCTTTG  749

seq1  TCATAACTTAGTACAACAACACCTTCTACTG-CTTTGA-CCCCCCCAC-T  794
      |||||  ||||||  |||||||| ||||||| |||||| ||||||||| |
seq2  TCATACTTTAGTAACACAACACC-TCTACTGCCTTTGACCCCCCCCACTT  798

seq1  AAAGATTAAGCCCTACCTTTAC  816
      ||||| |||||||||| |||||
seq2  AAAGA-TAAGCCCTACGTTTAC  819


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