BAC Information

Click to search

BAC

Clone NameB6Ng01-231G02
Chromosome12 (Build37)
Map Location 116,385,827 - 116,386,947
singlet/doubletsinglet
Overlap geneIgh
Upstream geneIghv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52
Downstream geneIghv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231G02.bB6Ng01-231G02.g
ACCGA043997GA043998
length9141,142
definitionB6Ng01-231G02.b B6Ng01-231G02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccatttttagtggggttatttgattt
tctggagtccaccttcttgagttcatatgtatatatcatatccaatatat
atattggatattagtaccctatctgatttaggataggtaaatatcctttc
acaatctgttggtggtctttttgtcttgttgacagtgtcttttttttacg
ttttaatattataatttattttttacactccatattttatttaccctgat
ccaccgtccaactattccacatcccatatctcctccccacccccatgtct
ccatgtgaatgtccccacccccactgtacctaatctctaaacatcctggg
gtctccagtctcttcagggttaggtgcatcatctctggatgaacacagac
atggaagtcctctactgtatatgtgttggggcctcatttcacctggtgta
ttctgtctgattggtgatccagtatttgagagagctagggggtccagatt
acctgagactgctggtcctccttcagagtagcctttctcctcagcttctt
tcagccttccctaattcaggtgtcacctgtatctgtccactggttgggtg
caactatctgcctctgactcagaagcttgttggatctttcagagggtagt
catgataggtccatttagtgagtgctccatagcctcaaacaacagggtta
ggccttgggatctccgcttgagctggatttcactttgggccggtcactgg
accttattttcctcaggctcctctccatttccatcactgtaattctttca
aacagaaatatttatgggtcagagttatgatgtgagatggcaacaccatc
catcacttgatgctctgtctttcctgctgaagactataagttaataaggg
ctctataagttccc
gaattcatgttctatcttcccttcctggtcagatatcatgtgatttcttg
tgaattgtcagtttacaaggcagcatcctcagagcatcagggacttttct
ggacaggaagaatttcccctacaatacagggtgctagatggttgtatctt
ggcattacataacactgaggtgctgggtaatgtctatagtggtgtatgtc
atactccagaatatgtgatgctagtgtctctcatatgttgcaatgcacag
gactgcatgcctagttgattagtatggatgtacatagacatcctcctcat
aaaatatcctccattcacaaatgtccaaattctgtaagattgtgaataat
atgagtttattctaccaagtctaactaatatgaagatcaaaatacttgct
gatctggtacaatgtctgtgcaggacatttccttgaataaatgcacacat
ggatttgtaacatttttctatttttctactttcaacatgaatgatttttc
ccatcacctctggttgtcccttcttttcattgatcaaaaaccactagcat
ttccttttgtacctgtctatagttgatgaatcggaacaccacttaagggt
ctgtgcactagttttactacttgagttgcctttgcagagacgattgtgtc
tgaaaacaggctcacatcttctcactctgattcctttaaaaaactgatac
accatggtgtcctcaatggtcagatatataatatgtagtaataactactt
ttccaaatgttttatggaatctctggaatgttcattcagtaagttacctc
tgacataaatttactgaagggcttaagcaatttaagcttttcctttccca
gacactctacatgcaaaaagaatttgaccctgagtcctgccctgagaaat
gggggaatgggctttactcattctattttttcagccattaacacatttac
acaatggaagtaactactcaccttattaaaagagattgaatttcatgaaa
cttccttaaggcaatgggatggaactacaatatcatccggagtgagggaa
cccattccacaagacacccactagttactgcactcatgattagcgtaatt
ttagcccagaagctctgaatttatccattataccattccaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_116385827_116386947
seq2: B6Ng01-231G02.g_68_1209

seq1  GAATTCATGTTCTATCTTCCCTTCCTGGTCAGATATCATGTGATTTCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTTCTATCTTCCCTTCCTGGTCAGATATCATGTGATTTCTTG  50

seq1  TGAATTGTCAGTTTACAAGGCAGCATCCTCAGAGCATCAGGGACTTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGTCAGTTTACAAGGCAGCATCCTCAGAGCATCAGGGACTTTTCT  100

seq1  GGACAGGAAGAATTTCCCCTACAATACAGGGTGCTAGATGGTTGTATCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGAAGAATTTCCCCTACAATACAGGGTGCTAGATGGTTGTATCTT  150

seq1  GGCATTACATAACACTGAGGTGCTGGGTAATGTCTATAGTGGTGTATGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTACATAACACTGAGGTGCTGGGTAATGTCTATAGTGGTGTATGTC  200

seq1  ATACTCCAGAATATGTGATGCTAGTGTCTCTCATATGTTGCAATGCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCAGAATATGTGATGCTAGTGTCTCTCATATGTTGCAATGCACAG  250

seq1  GACTGCATGCCTAGTTGATTAGTATGGATGTACATAGACATCCTCCTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCATGCCTAGTTGATTAGTATGGATGTACATAGACATCCTCCTCAT  300

seq1  AAAATATCCTCCATTCACAAATGTCCAAATTCTGTAAGATTGTGAATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCCTCCATTCACAAATGTCCAAATTCTGTAAGATTGTGAATAAT  350

seq1  ATGAGTTTATTCTACCAAGTCTAACTAATATGAAGATCAAAATACTTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTTATTCTACCAAGTCTAACTAATATGAAGATCAAAATACTTGCT  400

seq1  GATCTGGTACAATGTCTGTGCAGGACATTTCCTTGAATAAATGCACACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGGTACAATGTCTGTGCAGGACATTTCCTTGAATAAATGCACACAT  450

seq1  GGATTTGTAACATTTTTCTATTTTTCTACTTTCAACATGAATGATTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGTAACATTTTTCTATTTTTCTACTTTCAACATGAATGATTTTTC  500

seq1  CCATCACCTCTGGTTGTCCCTTCTTTTCATTGATCAAAAACCACTAGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACCTCTGGTTGTCCCTTCTTTTCATTGATCAAAAACCACTAGCAT  550

seq1  TTCCTTTTGTACCTGTCTATAGTTGATGAATCGGAACACCACTTAAGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTGTACCTGTCTATAGTTGATGAATCGGAACACCACTTAAGGGT  600

seq1  CTGTGCACTAGTTTTACTACTTGAGTTGCCTTTGCAGAGACGATTGTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCACTAGTTTTACTACTTGAGTTGCCTTTGCAGAGACGATTGTGTC  650

seq1  TGAAAACAGGCTCACATCTTCTCACTCTGATTCC-TTAAAAAACTGATAC  699
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGAAAACAGGCTCACATCTTCTCACTCTGATTCCTTTAAAAAACTGATAC  700

seq1  ACCATGGTGTCCTCAATGGTCAGATATATAATATGTAGTAATAACTAC-T  748
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACCATGGTGTCCTCAATGGTCAGATATATAATATGTAGTAATAACTACTT  750

seq1  TTCCAAATGTTTTATGGAATCTCTGGAATGTTCATTCAGTAAGTTACCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAATGTTTTATGGAATCTCTGGAATGTTCATTCAGTAAGTTACCTC  800

seq1  TGACATAAA-TTACTGAAGGGCTTAAGCAA-TTAAGCTTT--CCTTCCCA  844
      ||||||||| |||||||||||||||||||| |||||||||  | ||||||
seq2  TGACATAAATTTACTGAAGGGCTTAAGCAATTTAAGCTTTTCCTTTCCCA  850

seq1  GACACTCTACATGCAAAAAGAATTTGA-CCTGAGTCCTGCCCTGAGAAAT  893
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GACACTCTACATGCAAAAAGAATTTGACCCTGAGTCCTGCCCTGAGAAAT  900

seq1  -GGGGAAT-GGCTTTACTCA-TCTA--TTTTCAGCCA-TAACACATTTAC  937
       ||||||| ||||||||||| ||||  |||||||||| ||||||||||||
seq2  GGGGGAATGGGCTTTACTCATTCTATTTTTTCAGCCATTAACACATTTAC  950

seq1  ACAATGG-AGT-ACTACTCACC-TATTAAAAGAGA-TGAA-TTCATGAAA  982
      ||||||| ||| |||||||||| |||||||||||| |||| |||||||||
seq2  ACAATGGAAGTAACTACTCACCTTATTAAAAGAGATTGAATTTCATGAAA  1000

seq1  CT--CTT-AGGCAAATGGATGGAACTAGAAAATATCATCCTGAGTGAGGG  1029
      ||  ||| ||||||  ||||||||||  | |||||||||| |||||||||
seq2  CTTCCTTAAGGCAATGGGATGGAACT--ACAATATCATCCGGAGTGAGGG  1048

seq1  AACACAATCACAAAAGAACACACA-TAGT--ATGCACTCCATGATAAGCG  1076
      ||| || || || ||| |||| || ||||   |||||| |||||| ||||
seq2  AACCCATTC-CACAAG-ACACCCACTAGTTACTGCACT-CATGATTAGCG  1095

seq1  T-ATATTAGCCCAGAAGCTC--AATATATCCATTATACAATTCACAGA  1121
      | || |||||||||||||||  ||| |||||||||||| |||| ||||
seq2  TAATTTTAGCCCAGAAGCTCTGAATTTATCCATTATACCATTC-CAGA  1142