BAC Information

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BAC

Clone NameB6Ng01-231H01
Chromosome12 (Build37)
Map Location 119,767,520 - 119,932,271
singlet/doubletdoublet
Overlap geneLOC100042993, LOC668611
Upstream geneRapgef5, A930023M06Rik, Cdca7l, Dnahc11, Sp4
Downstream geneEG668615, LOC620665, Sp8, Abcb5, Itgb8, EG627557, LOC100043011, 4732474O15Rik, LOC668632
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231H01.bB6Ng01-231H01.g
ACCGA044043GA044044
length1,090770
definitionB6Ng01-231H01.b B6Ng01-231H01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,767,520 - 119,768,599)(119,931,506 - 119,932,271)
sequence
gaattccacacttactaactgtacctagcctgtgccccgttctaggttgg
agcatcaaatgcacaaataggaatgacaattcttagactactaatccatt
ttgattccataattgagagtaataagatgcttttctcaagaggccatggc
aactaaaataaaaaacacgttgaacagtcaaggaagcctgaaatttgaga
agattcagaccatgcagttcttttgtcttgagatagcatccaaccttgcc
tgtgttttccaggtgactgcagaagcctcattggcaggaatgtaagaaat
agtccatgagttacaaatatgctcggttaaaacatttcctttctggagga
caaagctgcctgggccagaataacaatcaatcaccttgcttccaccgaca
agggacagaactgcaccttctcatctgtatccaagcctgatttgattccc
agctccggtgtgcagcgcagggcagcaagagcgttggattcccaccaacc
ctgccatcccgggagaggccgcctctgcttttcttagataagctgtggat
tgctaccggccatggccgggctttgcgcccctgggagtaatgaacacacc
acaccgtcggatctcagtctgtacataccttccccctgagcaattttaac
ttttcccatgtccattaggccttccagcctaatctcactctgccaattgc
tcccatggtgagatcattaagtaaattattttaagatcaaacaccctgca
gtgacaatggcgtcccatgtaaggtaaatgcttcaaaggccccccttttc
aaattacagctctccggagttcctccttcgcctctcctagggcctacccc
cgccactgccctgcaccacttggcttgttgccccaggcaaaggtagcact
gcttaattggcctctgtaacaaaacttgacctgtggaacagataacgcat
ggtttggagccttagagacaaaaattatccaagtttaaaacacatgaatg
ccccaactacgtcaccgaaaaaagcggactgaattgacgtctcctcccgg
ccgttcctgggtgtgtaagaatggcctctcggcgcccggg
gaattctttacccccatggtagaggtataatagaattctcaaccttgcct
cagaataataactatagtctgatcaaggtctcctcaaaaagcagaaagtg
gactcaaagcagacttaataatatacttctacagttctggcctttagaaa
ataacttgagaggcactttcaacactaatgcacctgttcacatggaaact
cggaaatctcagaatatttttcttgacaagatgtccagacattagtcgat
gtgattggcaaatatggcatgagatgaggaagccctattacctactcttt
aataatttaaaataacttgctaattctgaaatagattagtttaagtgtct
gtgtgtgtgcatgcatgtgtgcaagtgtgtgtgtgggtgtattgtataca
tgtatgtacatgtttatgtgaatgttcttatctgtgctgggtatatgagc
tagtcatagttgatcctgggcatcttcctcaatggttgccacatttttga
gacaggtctcttactggacctggtgctcactgtttattctaggctggcta
gcccaatggccccagaaccttgcttgtctttatctcccagctctgggatt
acagacaattgtcaccatgcctgattttagtgggttctggacatctgaac
tcaggtcctctcattttatacagcaagccttttatgcactgagccacctc
cccagccttggtttaatttgtaaaatgttttgcaactgtccttaacataa
aaaaaaatgtttgtaatgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_119767520_119768599
seq2: B6Ng01-231H01.b_48_1137

seq1  GAATTCCACACTTACTAACTGTACCTAGCCTGTGCCCCGTTCTAGGTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACTTACTAACTGTACCTAGCCTGTGCCCCGTTCTAGGTTGG  50

seq1  AGCATCAAATGCACAAATAGGAATGACAATTCTTAGACTACTAATCCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAAATGCACAAATAGGAATGACAATTCTTAGACTACTAATCCATT  100

seq1  TTGATTCCATAATTGAGAGTAATAAGATGCTTTTCTCAAGAGGCCATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCCATAATTGAGAGTAATAAGATGCTTTTCTCAAGAGGCCATGGC  150

seq1  AACTAAAATAAAAAACACGTTGAACAGTCAAGGAAGCCTGAAATTTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAATAAAAAACACGTTGAACAGTCAAGGAAGCCTGAAATTTGAGA  200

seq1  AGATTCAGACCATGCAGTTCTTTTGTCTTGAGATAGCATCCAACCTTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAGACCATGCAGTTCTTTTGTCTTGAGATAGCATCCAACCTTGCC  250

seq1  TGTGTTTTCCAGGTGACTGCAGAAGCCTCATTGGCAGGAATGTAAGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTCCAGGTGACTGCAGAAGCCTCATTGGCAGGAATGTAAGAAAT  300

seq1  AGTCCATGAGTTACAAATATGCTCGGTTAAAACATTTCCTTTCTGGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATGAGTTACAAATATGCTCGGTTAAAACATTTCCTTTCTGGAGGA  350

seq1  CAAAGCTGCCTGGGCCAGAATAACAATCAATCACCTTGCTTCCACCGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTGCCTGGGCCAGAATAACAATCAATCACCTTGCTTCCACCGACA  400

seq1  AGGGACAGAACTGCACCTTCTCATCTGTATCCAAGCCTGATTTGATTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAGAACTGCACCTTCTCATCTGTATCCAAGCCTGATTTGATTCCC  450

seq1  AGCTCCGGTGTGCAGCGCAGGGCAGCAAGAGCGTTGGATTCCCACCAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCGGTGTGCAGCGCAGGGCAGCAAGAGCGTTGGATTCCCACCAACC  500

seq1  CTGCCATCCCGGGAGAGGCCGCCTCTGCTTTTCTTAGATAAGCTGTGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATCCCGGGAGAGGCCGCCTCTGCTTTTCTTAGATAAGCTGTGGAT  550

seq1  TGCTACCGGCCATGGCCGGGCTTTGCGCCCCTGGGAGTAATGAACACACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACCGGCCATGGCCGGGCTTTGCGCCCCTGGGAGTAATGAACACACC  600

seq1  ACACCGTCGGATCTCAGTCTGTACATACCTTCCCCCTGAGCAATTTTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCGTCGGATCTCAGTCTGTACATACCTTCCCCCTGAGCAATTTTAAC  650

seq1  TTTTCCCATGTCCATTAGGCCTTCCAGCCTAATCTCACTCTGCCAATTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCATGTCCATTAGGCCTTCCAGCCTAATCTCACTCTGCCAATTGC  700

seq1  TCCCATGGTGAGATCATTAAGTAAATTATTTTAAGATCAAACACCCTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGGTGAGATCATTAAGTAAATTATTTTAAGATCAAACACCCTGCA  750

seq1  GTGACAATGGCGTCCCATGTAAGGTAAATGCTTCAAAGGCCCCCC-TTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTGACAATGGCGTCCCATGTAAGGTAAATGCTTCAAAGGCCCCCCTTTTC  800

seq1  AAATTACAGCTCTCCGGAGTTCCTCC-TCGCCTCTCCTAGGGCCTA-CCC  847
      |||||||||||||||||||||||||| ||||||||||||||||||| |||
seq2  AAATTACAGCTCTCCGGAGTTCCTCCTTCGCCTCTCCTAGGGCCTACCCC  850

seq1  CGCCACTG-CCTGCACCACTTGGCTTGTTGCCCCAGGCAAAGGTAGCACT  896
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CGCCACTGCCCTGCACCACTTGGCTTGTTGCCCCAGGCAAAGGTAGCACT  900

seq1  GC-TAATTGGCCTCTGTAACAAAAC-TGACCTGTGGACAGGATAAGGC-T  943
      || |||||||||||||||||||||| |||||||||||   ||||| || |
seq2  GCTTAATTGGCCTCTGTAACAAAACTTGACCTGTGGAACAGATAACGCAT  950

seq1  TGTTTGGAG-CTTAGAGACAAAAATTATTCAAGGTTAAAAACACATGAAT  992
       |||||||| |||||||||||||||||| ||| ||| |||||||||||||
seq2  GGTTTGGAGCCTTAGAGACAAAAATTATCCAA-GTTTAAAACACATGAAT  999

seq1  GCCCCAACTACGTCACC-AAAAAAGCGGACTGAATGAACGTCTTCTCCC-  1040
      ||||||||||||||||| |||||||||||||||||  |||||| ||||| 
seq2  GCCCCAACTACGTCACCGAAAAAAGCGGACTGAATTGACGTCTCCTCCCG  1049

seq1  GCCGTTCCT-GGTGTGAAAGAATGCGCTCTCGGCGCCCGGG  1080
      ||||||||| |||||| |||||||  |||||||||||||||
seq2  GCCGTTCCTGGGTGTGTAAGAATGGCCTCTCGGCGCCCGGG  1090

seq1: chr12_119931506_119932271
seq2: B6Ng01-231H01.g_72_841 (reverse)

seq1  AACATTACAAACA-TTTTTTCTATGTTAAGTACAGTTGC-AAACATTTTA  48
      ||||||||||||| |||||| ||||||||| |||||||| ||||||||||
seq2  AACATTACAAACATTTTTTTTTATGTTAAGGACAGTTGCAAAACATTTTA  50

seq1  CAAATTAAACCAAGGCTGGGGAGGTGGCTCAGTGCATAAAAGGCTTGCTG  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTAAACCAAGGCTGGGGAGGTGGCTCAGTGCATAAAAGGCTTGCTG  100

seq1  TAT-AAATGAGAGGACCTGAGTTCAGATGTCCAGAACCCACTAAAATCAG  147
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATGAGAGGACCTGAGTTCAGATGTCCAGAACCCACTAAAATCAG  150

seq1  GCATGGTGACAATTGTCTGTAATCCCAGAGCTGGGAGATAAAGACAAGC-  196
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCATGGTGACAATTGTCTGTAATCCCAGAGCTGGGAGATAAAGACAAGCA  200

seq1  AGGTTCTGGGGCCATTGGGCTAGCCAGCCTAGAATAAACAGTGAGCACCA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTGGGGCCATTGGGCTAGCCAGCCTAGAATAAACAGTGAGCACCA  250

seq1  GGTCCAGTAAGAGACCTGTCTCAAAAATGTGGCAACCATTGAGGAAGATG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGTAAGAGACCTGTCTCAAAAATGTGGCAACCATTGAGGAAGATG  300

seq1  CCCAGGATCAACTATGACTAGCTCATATACCCAGCACAGATAAGAACATT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGATCAACTATGACTAGCTCATATACCCAGCACAGATAAGAACATT  350

seq1  CACATAAACATGTACATACATGTATACAATACACCCACACACACACTTGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAACATGTACATACATGTATACAATACACCCACACACACACTTGC  400

seq1  ACACATGCATGCACACACACAGACACTTAAACTAATCTATTTCAGAATTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCATGCACACACACAGACACTTAAACTAATCTATTTCAGAATTA  450

seq1  GCAAGTTATTTTAAATTATTAAAGAGTAGGTAATAGGGCTTCCTCATCTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTATTTTAAATTATTAAAGAGTAGGTAATAGGGCTTCCTCATCTC  500

seq1  ATGCCATATTTGCCAATCACATCGACTAATGTCTGGACATCTTGTCAAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATATTTGCCAATCACATCGACTAATGTCTGGACATCTTGTCAAGA  550

seq1  AAAATATTCTGAGATTTCCGAGTTTCCATGTGAACAGGTGCATTAGTGTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTCTGAGATTTCCGAGTTTCCATGTGAACAGGTGCATTAGTGTT  600

seq1  GAAAGTGCCTCTCAAGTTATTTTCTAAAGGCCAGAACTGTAGAAGTATAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGCCTCTCAAGTTATTTTCTAAAGGCCAGAACTGTAGAAGTATAT  650

seq1  TATTAAGTCTGCTTTGAGTCCACTTTCTGCTTTTTGAGGAGACCTTGATC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGTCTGCTTTGAGTCCACTTTCTGCTTTTTGAGGAGACCTTGATC  700

seq1  AGACTATAGTTATTATTCTGAGGCAAGGTTGAGAATTCTATTATACCTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATAGTTATTATTCTGAGGCAAGGTTGAGAATTCTATTATACCTCT  750

seq1  ACCATGTGGGTAAAGAATTC  766
      |||||| |||||||||||||
seq2  ACCATGGGGGTAAAGAATTC  770