BAC Information

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BAC

Clone NameB6Ng01-232O24
Chromosome12 (Build37)
Map Location 63,071,416 - 63,229,815
singlet/doubletdoublet
Overlap geneLOC100040403
Upstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699, LOC665707
Downstream geneLOC665713, LOC622746, LOC100040438, 1700047L15Rik, Tspyl-ps, EG665741, EG382606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232O24.bB6Ng01-232O24.g
ACCGA045148GA045149
length1,1061,079
definitionB6Ng01-232O24.b B6Ng01-232O24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,071,416 - 63,072,136)(63,228,727 - 63,229,815)
sequence
gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggactgggcgaagtg
gttgttctgggttctgatgatggtgagtggtcctggtttctgttagtagg
attcttacgttttccttttgccatctggcaatctctggagttagttgtta
tagttgtctttgttaagagattgttcctctgttgattttgttaccctcaa
tcagcagacgtgggagacaagctctctgctctgagtttcagtggtcagag
cagtctctgcaggcaagctctcctcttttggggaaggtgtacagttatct
ggtgtttggaccttttcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagctatgttggttttgccaggaaggtggccggttgtctggagt
cgaagatgttgccgcctcagaagctctgtggctctcgccagaaaggtggc
cggttgtctggagccgaagatggtgccgccccagaagctctgtgactctt
gcccgtctcagaaatggctggcctctgtattccacatggtcacccctgca
gcctgccctccgcggagtcctggagccaagaaggctcccgccggcgcctg
tgacacaaacctctcaggccgggcagacccccgtgctctcaccaggaagg
tggccagctgtctggagctgaagatggcgccgcctcagaagctctgtggc
tctcgccaggaaggtggccggttgtctggagacgaagatggcgccacccc
agaagatctgcgactctcgcccatcccagaaatggctggcctctgtattc
cacatggtctcccgtgcagcctgccctccgcgcgaaaatagaagctaatt
ttgagaaaatttaatagattatgatgcaatatttaggtataggatggcac
cacggctaagagcgctgatcttatgagaggtcctgagttcaatttccagc
aacaacatgggtggctcaaaaccatcctgtatgggattgttgtcatcttc
tgggttgtctgatgaccatgacaatgagtcacttataaaaaaataaatgt
tttttt

gaattctgtctgacactgtgtcatacttccttccagtgccaatacagatt
tattgggagatgtttagtacatgctttggagaaggagttgaactggaata
tggagagatcttgagggtattagattgacagaggtactgtttgacatatt
tctgcttgtttctcttttgaagtcctaatatctagcgcattaggctatga
ctacacatagagataagtgttaggtcccagacccaggacaaatggccaaa
gtgcatatttaacatgtcaaggtatagtgacctccaggttttcccagtat
cctccagtccctacacattaaagggtttgactgtcataccctgcaacctg
ctctaaacttcttcaacccaggggctgagctgcccttcacctacttgcct
accatgtataataaagtcatgttggttagctgcatatttttggtctatac
ttcaccttcacagcctcttgatctagctgtttcatcccctctcacctctc
ttcacgtgactcagagtcatgtctaatctatatgttctcacatgcctctg
cctctgaccttgctctcctatttgtctaaaacaaacgatctccttcaaca
gacataggtactgtcatgtcctcctttttttttatttatttctgttttca
tacagtaggttcttcaaagatccattttagttaaaacaagttcatctgac
ctactggttgcattaatatggctgatatgctggttaaaagagtctgacac
tgactgacacccaaaggaaagcttatgttaagagatgagaggtgactcag
aaagaagcgaatgctgccaaccctttcatcatggatagcttgcttttaga
aatgagaggaatacagaaaaagaaatgaggggatacatttctgttaaaaa
aaattctctgataatttcttatgatagccctgacatacttgcatactttt
ctctctgttttctatttatctctcccatttaccataagaaaaacagttat
ataggtttgttttatgtccatgtcgactaaactgttgtaatggtttggaa
tattcctccacattaaattccgaatgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_63071416_63072136
seq2: B6Ng01-232O24.b_430_1150

seq1  CCAAAACAGGATCTTTCCCAGAAGCTATGTTGGTTTTGCCAGGAAGGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACAGGATCTTTCCCAGAAGCTATGTTGGTTTTGCCAGGAAGGTGG  50

seq1  CCGGTTGTCTGGAGTCGAAGATGTTGCCGCCTCAGAAGCTCTGTGGCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTTGTCTGGAGTCGAAGATGTTGCCGCCTCAGAAGCTCTGTGGCTCT  100

seq1  CGCCAGAAAGGTGGCCGGTTGTCTGGAGCCGAAGATGGTGCCGCCCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAGAAAGGTGGCCGGTTGTCTGGAGCCGAAGATGGTGCCGCCCCAGA  150

seq1  AGCTCTGTGACTCTTGCCCGTCTCAGAAATGGCTGGCCTCTGTATTCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGTGACTCTTGCCCGTCTCAGAAATGGCTGGCCTCTGTATTCCAC  200

seq1  ATGGTCACCCCTGCAGCCTGCCCTCCGCGGAGTCCTGGAGCCAAGAAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCACCCCTGCAGCCTGCCCTCCGCGGAGTCCTGGAGCCAAGAAGGC  250

seq1  TCCCGCCGGCGCCTGTGACACAAACCTCTCAGGCCGGGCAGACCCCCGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGCCGGCGCCTGTGACACAAACCTCTCAGGCCGGGCAGACCCCCGTG  300

seq1  CTCTCACCAGGAAGGTGGCCAGCTGTCTGGAGCTGAAGATGGCGCCGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACCAGGAAGGTGGCCAGCTGTCTGGAGCTGAAGATGGCGCCGCCT  350

seq1  CAGAAGCTCTGTGGCTCTCGCCAGGAAGGTGGCCGGTTGTCTGGAGACGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCTCTGTGGCTCTCGCCAGGAAGGTGGCCGGTTGTCTGGAGACGA  400

seq1  AGATGGCGCCACCCCAGAAGATCTGCGACTCTCGCCCATCCCAGAAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCGCCACCCCAGAAGATCTGCGACTCTCGCCCATCCCAGAAATGG  450

seq1  CTGGCCTCTGTATTCCACATGGTCTCCCGTGCAGCCTGCCCTCCGCGCGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCTGTATTCCACATGGTCTCCCGTGCAGCCTGCCCTCCGCGCGA  500

seq1  AAATAGAAGCTAATTTTGAGAAAATTTAATAGATTATGAATGCAATATTT  550
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAATAGAAGCTAATTTTGAGAAAATTTAATAGATTATG-ATGCAATATTT  549

seq1  AGGTATAGGATGGCACCACGGCTATGAGCGCTGATC-TATGAGAGGTCCT  599
      |||||||||||||||||||||||| ||||||||||| |||||||||||||
seq2  AGGTATAGGATGGCACCACGGCTAAGAGCGCTGATCTTATGAGAGGTCCT  599

seq1  GAGTTCAATTTCCAGCAACAACAT-GGTGGCTCAAAACCAT-CTGTAATG  647
      |||||||||||||||||||||||| |||||||||||||||| |||| |||
seq2  GAGTTCAATTTCCAGCAACAACATGGGTGGCTCAAAACCATCCTGT-ATG  648

seq1  GGATTTGTTGTCATCTTCTGGTGTGTCTGATGACAATGACAATGAAATCA  697
      ||| |||||||||||||||||  ||||||||||| ||||||||| | |||
seq2  GGA-TTGTTGTCATCTTCTGGGTTGTCTGATGACCATGACAATG-AGTCA  696

seq1  CTTAT-AAAAAATAAATGTTTTTTT  721
      ||||| |||||||||||||||||||
seq2  CTTATAAAAAAATAAATGTTTTTTT  721


seq1: chr12_63228727_63229815
seq2: B6Ng01-232O24.g_67_1145 (reverse)

seq1  TAACAATCGGAATTTAATTGTGTGAGGAATA-TCCAAACCATTAACAACA  49
      ||||| ||||||||||| |||| |||||||| ||||||||||| ||||||
seq2  TAACATTCGGAATTTAA-TGTG-GAGGAATATTCCAAACCATT-ACAACA  47

seq1  GTTTTTAGTTCCACAATGAACATAAAAACAAAACCTATAATTAACTG-TT  98
      |  ||||| || || ||| ||||||||   |||||||||  |||||| ||
seq2  G--TTTAG-TCGAC-ATGGACATAAAA--CAAACCTATA--TAACTGTTT  89

seq1  TTCTTATGGTAAATGGGAAGAGATAAATAGAAAACAGAGAGAAAAGTATG  148
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTCTTATGGTAAATGGG-AGAGATAAATAGAAAACAGAGAGAAAAGTATG  138

seq1  CAAGTATGTCAGGGCTATCATAAGAAATTATCAGAGAATTTTTTTTAACA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATGTCAGGGCTATCATAAGAAATTATCAGAGAATTTTTTTTAACA  188

seq1  GAAATGTATCCCCTCATTTCTTTTTCTGTATTCCTCTCATTTCTAAAAGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTATCCCCTCATTTCTTTTTCTGTATTCCTCTCATTTCTAAAAGC  238

seq1  AAGCTATCCATGATGAAAGGGTTGGCAGCATTCGCTTCTTTCTGAGTCAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATCCATGATGAAAGGGTTGGCAGCATTCGCTTCTTTCTGAGTCAC  288

seq1  CTCTCATCTCTTAACATAAGCTTTCCTTTGGGTGTCAGTCAGTGTCAGAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATCTCTTAACATAAGCTTTCCTTTGGGTGTCAGTCAGTGTCAGAC  338

seq1  TCTTTTAACCAGCATATCAGCCATATTAATGCAACCAGTAGGTCAGATGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAACCAGCATATCAGCCATATTAATGCAACCAGTAGGTCAGATGA  388

seq1  ACTTGTTTTAACTAAAATGGATCTTTGAAGAACCTACTGTATGAAAACAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTTTAACTAAAATGGATCTTTGAAGAACCTACTGTATGAAAACAG  438

seq1  AAATAAATAAAAAAAAAGGAGGACATGACAGTACCTATGTCTGTTGAAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAAAAAAAAGGAGGACATGACAGTACCTATGTCTGTTGAAGG  488

seq1  AGATCGTTTGTTTTAGACAAATAGGAGAGCAAGGTCAGAGGCAGAGGCAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCGTTTGTTTTAGACAAATAGGAGAGCAAGGTCAGAGGCAGAGGCAT  538

seq1  GTGAGAACATATAGATTAGACATGACTCTGAGTCACGTGAAGAGAGGTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAACATATAGATTAGACATGACTCTGAGTCACGTGAAGAGAGGTGA  588

seq1  GAGGGGATGAAACAGCTAGATCAAGAGGCTGTGAAGGTGAAGTATAGACC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGATGAAACAGCTAGATCAAGAGGCTGTGAAGGTGAAGTATAGACC  638

seq1  AAAAATATGCAGCTAACCAACATGACTTTATTATACATGGTAGGCAAGTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATGCAGCTAACCAACATGACTTTATTATACATGGTAGGCAAGTA  688

seq1  GGTGAAGGGCAGCTCAGCCCCTGGGTTGAAGAAGTTTAGAGCAGGTTGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGGGCAGCTCAGCCCCTGGGTTGAAGAAGTTTAGAGCAGGTTGCA  738

seq1  GGGTATGACAGTCAAACCCTTTAATGTGTAGGGACTGGAGGATACTGGGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATGACAGTCAAACCCTTTAATGTGTAGGGACTGGAGGATACTGGGA  788

seq1  AAACCTGGAGGTCACTATACCTTGACATGTTAAATATGCACTTTGGCCAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGGAGGTCACTATACCTTGACATGTTAAATATGCACTTTGGCCAT  838

seq1  TTGTCCTGGGTCTGGGACCTAACACTTATCTCTATGTGTAGTCATAGCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTGGGTCTGGGACCTAACACTTATCTCTATGTGTAGTCATAGCCT  888

seq1  AATGCGCTAGATATTAGGACTTCAAAAGAGAAACAAGCAGAAATATGTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCGCTAGATATTAGGACTTCAAAAGAGAAACAAGCAGAAATATGTCA  938

seq1  AACAGTACCTCTGTCAATCTAATACCCTCAAGATCTCTCCATATTCCAGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTACCTCTGTCAATCTAATACCCTCAAGATCTCTCCATATTCCAGT  988

seq1  TCAACTCCTTCTCCAAAGCATGTACTAAACATCTCCCAATAAATCTGTAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCCTTCTCCAAAGCATGTACTAAACATCTCCCAATAAATCTGTAT  1038

seq1  TGGCACTGGAAGGAAGTATGACACAGTGTCAGACAGAATTC  1089
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTGGAAGGAAGTATGACACAGTGTCAGACAGAATTC  1079


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