BAC Information

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BAC

Clone NameB6Ng01-233F24
Chromosome12 (Build37)
Map Location 86,795,595 - 86,944,826
singlet/doubletdoublet
Overlap geneFos, EG667124, Jundm2
Upstream geneLin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119
Downstream geneLOC100042073, Batf, BC011209, 0610007P14Rik, Ttll5, Tgfb3, 1700019E19Rik, 1700020O03Rik, LOC100042112, Esrrb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233F24.bB6Ng01-233F24.g
ACCGA045454GA045455
length880709
definitionB6Ng01-233F24.b B6Ng01-233F24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,943,961 - 86,944,826)(86,795,595 - 86,796,303)
sequence
gaattcttccactcgagagaataaaggtggtggtgatttactcattcccc
gcccctggtctcatttatcatatggggagcatttatcatatggctcattt
atcatatgggaagcaatacaacaccccacgtctttctgtatgcctgtagg
tcgcggtcttactttggcaagctacattcgtaaaggtctccccttaaaca
ccagcatcttcatccagaataacaaaaacacttaaaaagatgacaggaga
ggaccccaggacctaacttctagaacatcagaagaaaatgtgaactcccg
gggccccgaagacagggctctccagataagcaggcagcctggaccggcat
agaggatggtgtgcaaatggtgtgcaagatgacttcaggtctgagacaga
gcaggcaatgagtgagggtgcctagaatcccaggagcaagagtggaacca
aagccaccagcagggagcaatgacccagaatcaggaagacttgggagctg
gattctggaagattcccaggagggaggagatgtagcacaggaccccacgg
aaggggaacagaaggtggcaagccagagacccgcagagtgcaggaccaaa
agttaggaatctcagagggagttagacatggaggggttagggaattttgg
tcaaagtcacacagctagcaagtgacaccgagctgttccttggagccaca
aaatcaggcggtcatttacttcctgtgatctgaacagcactgccaaacag
cctctgaaaccaaagcgacccagagggcgaggagcaaagagttagagaaa
gcgccttgaaatgacagtctacccaaaaccacaaatggccgcttctttgc
aaaggcttgccctgaaactcttacaggcaa
gaattcagcttcagttgttgaactaaacatttcaggactctctcgacttt
gcaaatcacagttctcggggacttctgagtgtcctctcccttcaaggggg
gtcatttaggcatcccttcccccaggccttcaaccagagttccacggaat
gaatgcctcgagttctgctatacgaaaggcaaaatttaaacttttcctct
cctgattttccttgactctggggttaattccaacagtgggagttctctaa
gctgggtttgattttagcctcctgggcaaggtagtttggttagtggctgt
tctgtggtctactgtctgaggagaagtggttagggaggtcacccagacag
ttatggtccactgagggtggagggagtggtctaggtttggcctcagtctg
gagtcccaggctcacagacagatcttggctcaggacatgaggctgaggcg
tgctgggacagcctagggggtgtcctggatttcccagggctggggaaccc
tcgctggcccgggggcggtagacactgttccagaatctgttctggctcca
ctgccgcctcagcactttctaattacagctccaaacaacaacagcagcct
cggcagtcatgacaacaggccccgcccaccagacctccagcccagctgac
aacacgtgatggcgacgctcctccgcccctggcgcagagggagggcgggg
aggctagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_86943961_86944826
seq2: B6Ng01-233F24.b_49_927 (reverse)

seq1  TGCCTGT-AGAG-TTCAGGGC-AGCC-TTGCAA--GAGCGG-CATTTGTG  43
      ||||||| |||| |||||||| |||| ||||||   ||||| ||||||||
seq2  TGCCTGTAAGAGTTTCAGGGCAAGCCTTTGCAAAGAAGCGGCCATTTGTG  50

seq1  G-TTTGGGT-GGCTGTCATT--CAGGCGCTTTCTCT-ACTCTTTGCTCCT  88
      | ||||||| | ||||||||   ||||||||||||| |||||||||||||
seq2  GTTTTGGGTAGACTGTCATTTCAAGGCGCTTTCTCTAACTCTTTGCTCCT  100

seq1  CGCCCTCTGGGTCGCTTTGGTTTCAGAGGCTGTTTGGCAGTGCTGTTCAG  138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCTCTGGGTCGCTTTGGTTTCAGAGGCTGTTTGGCAGTGCTGTTCAG  150

seq1  ATCACAGGAAGTAAATGACCGCCTGATTTTGTGGCTCCAAGGAACAGCTC  188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGGAAGTAAATGACCGCCTGATTTTGTGGCTCCAAGGAACAGCTC  200

seq1  GGTGTCACTTGCTAGCTGTGTGACTTTGACC-AAATTCCCTAACCCCTCC  237
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGTGTCACTTGCTAGCTGTGTGACTTTGACCAAAATTCCCTAACCCCTCC  250

seq1  ATGTCTAACTCCCTCTGAGATTCCTAACTTTTGGTCCTGCACTCTGCGGG  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTAACTCCCTCTGAGATTCCTAACTTTTGGTCCTGCACTCTGCGGG  300

seq1  TCTCTGGCTTGCCACCTTCTGTTCCCCTTCCGTGGGGTCCTGTGCTACAT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGCTTGCCACCTTCTGTTCCCCTTCCGTGGGGTCCTGTGCTACAT  350

seq1  CTCCTCCCTCCTGGGAATCTTCCAGAATCCAGCTCCCAAGTCTTCCTGAT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCTCCTGGGAATCTTCCAGAATCCAGCTCCCAAGTCTTCCTGAT  400

seq1  TCTGGGTCATTGCTCCCTGCTGGTGGCTTTGGTTCCACTCTTGCTCCTGG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTCATTGCTCCCTGCTGGTGGCTTTGGTTCCACTCTTGCTCCTGG  450

seq1  GATTCTAGGCACCCTCACTCATTGCCTGCTCTGTCTCAGACCTGAAGTCA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTAGGCACCCTCACTCATTGCCTGCTCTGTCTCAGACCTGAAGTCA  500

seq1  TCTTGCACACCATTTGCACACCATCCTCTATGCCGGTCCAGGCTGCCTGC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCACACCATTTGCACACCATCCTCTATGCCGGTCCAGGCTGCCTGC  550

seq1  TTATCTGGAGAGCCCTGTCTTCGGGGCCCCGGGAGTTCACATTTTCTTCT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGGAGAGCCCTGTCTTCGGGGCCCCGGGAGTTCACATTTTCTTCT  600

seq1  GATGTTCTAGAAGTTAGGTCCTGGGGTCCTCTCCTGTCATCTTTTTAAGT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCTAGAAGTTAGGTCCTGGGGTCCTCTCCTGTCATCTTTTTAAGT  650

seq1  GTTTTTGTTATTCTGGATGAAGATGCTGGTGTTTAAGGGGAGACCTTTAC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTATTCTGGATGAAGATGCTGGTGTTTAAGGGGAGACCTTTAC  700

seq1  GAATGTAGCTTGCCAAAGTAAGACCGCGACCTACAGGCATACAGAAAGAC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTAGCTTGCCAAAGTAAGACCGCGACCTACAGGCATACAGAAAGAC  750

seq1  GTGGGGTGTTGTATTGCTTCCCATATGATAAATGAGCCATATGATAAATG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTGTTGTATTGCTTCCCATATGATAAATGAGCCATATGATAAATG  800

seq1  CTCCCCATATGATAAATGAGACCAGGGGCGGGGAATGAGTAAATCACCAC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCATATGATAAATGAGACCAGGGGCGGGGAATGAGTAAATCACCAC  850

seq1  CACCTTTATTCTCTCGAGTGGAAGAATTC  866
      |||||||||||||||||||||||||||||
seq2  CACCTTTATTCTCTCGAGTGGAAGAATTC  879

seq1: chr12_86795595_86796303
seq2: B6Ng01-233F24.g_65_773

seq1  GAATTCAGCTTCAGTTGTTGAACTAAACATTTCAGGACTCTCTCGACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTCAGTTGTTGAACTAAACATTTCAGGACTCTCTCGACTTT  50

seq1  GCAAATCACAGTTCTCGGGGACTTCTGAGTGTCCTCTCCCTTCAAGGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCACAGTTCTCGGGGACTTCTGAGTGTCCTCTCCCTTCAAGGGGG  100

seq1  GTCATTTAGGCATCCCTTCCCCCAGGCCTTCAACCAGAGTTCCACGGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTAGGCATCCCTTCCCCCAGGCCTTCAACCAGAGTTCCACGGAAT  150

seq1  GAATGCCTCGAGTTCTGCTATACGAAAGGCAAAATTTAAACTTTTCCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCCTCGAGTTCTGCTATACGAAAGGCAAAATTTAAACTTTTCCTCT  200

seq1  CCTGATTTTCCTTGACTCTGGGGTTAATTCCAACAGTGGGAGTTCTCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTTTCCTTGACTCTGGGGTTAATTCCAACAGTGGGAGTTCTCTAA  250

seq1  GCTGGGTTTGATTTTAGCCTCCTGGGCAAGGTAGTTTGGTTAGTGGCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTTTGATTTTAGCCTCCTGGGCAAGGTAGTTTGGTTAGTGGCTGT  300

seq1  TCTGTGGTCTACTGTCTGAGGAGAAGTGGTTAGGGAGGTCACCCAGACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGTCTACTGTCTGAGGAGAAGTGGTTAGGGAGGTCACCCAGACAG  350

seq1  TTATGGTCCACTGAGGGTGGAGGGAGTGGTCTAGGTTTGGCCTCAGTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTCCACTGAGGGTGGAGGGAGTGGTCTAGGTTTGGCCTCAGTCTG  400

seq1  GAGTCCCAGGCTCACAGACAGATCTTGGCTCAGGACATGAGGCTGAGGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCAGGCTCACAGACAGATCTTGGCTCAGGACATGAGGCTGAGGCG  450

seq1  TGCTGGGACAGCCTAGGGGGTGTCCTGGATTTCCCAGGGCTGGGGAACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGACAGCCTAGGGGGTGTCCTGGATTTCCCAGGGCTGGGGAACCC  500

seq1  TCGCTGGCCCGGGGGCGGTAGACACTGTTCCAGAATCTGTTCTGGCTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTGGCCCGGGGGCGGTAGACACTGTTCCAGAATCTGTTCTGGCTCCA  550

seq1  CTGCCGCCTCAGCACTTTCTAATTACAGCTCCAAACAACAACAGCAGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGCCTCAGCACTTTCTAATTACAGCTCCAAACAACAACAGCAGCCT  600

seq1  CGGCAGTCATGACAACAGGCCCCGCCCACCAGACCTCCAGCCCAGCTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGTCATGACAACAGGCCCCGCCCACCAGACCTCCAGCCCAGCTGAC  650

seq1  AACACGTGATGGCGACGCTCCTCCGCCCCTGGCGCAGAGGGAGGGCGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACGTGATGGCGACGCTCCTCCGCCCCTGGCGCAGAGGGAGGGCGGGG  700

seq1  AGGCGAGGA  709
      |||| ||||
seq2  AGGCTAGGA  709