BAC Information

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BAC

Clone NameB6Ng01-234C13
Chromosome12 (Build37)
Map Location 12,408,497 - 12,409,566
singlet/doubletsinglet
Overlap genenone
Upstream geneVsnl1, EG209550, LOC217390, LOC628327, LOC627110, LOC100043209, D12Ertd553e
Downstream geneLOC100043215, Mycn, EG668473, LOC628449, Ddx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234C13.bB6Ng01-234C13.g
ACCGA046000GA046001
length1,2131,075
definitionB6Ng01-234C13.b B6Ng01-234C13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcataaatggtacttttaaactagccatgtaaggagcagctagata
ggtgttttcctggtggataatgaaaagaggaccataccttcaattgtgtt
ctgtgaagactgtagtttctaactgcactggactgataggagtttacctt
tttaaatgtttcattagttctttgaggatttcacacaatgtattttgatc
atatgtatatctctctcctaagttcttcctgagccacttcctgtccttag
tctcctaacttagtgcccctttgtttgttttcttcatttttagacattct
cattatagaacatggagaaaccaagctggtatttccttggaagctccatc
cctgttgcttagatagcatagtgccagcagatgctatacatttctaccaa
agaagcaaagttagcaccagtactacccagatctgatctcagtgagctat
gctaatgacctgcctggagagatatacacatggtgtaattgtgacacaaa
cattacagaaacatcaggccactttctgattacacttaaggccagactca
caagatgaaatcaattcctggcactgttataaagtcaagaaccaggcagg
tcataaaccttcctggagaacctatcaccattttcctgttaaatggagta
ctgaactgactttcaataactttttgttatgcccaaagatcagtatgtac
ctcaactcttatcagaaaaagcttcacaactgttcaaggtacagagaata
agagacagtagagtgttcatccctaagggatatatctgtatatcacaccc
taaggatcaggaatgattgcagaagaaggggtggaaaggctgtaagaggt
ggtggatgactccaaagaaaaagtgtcttctggacacgatggggcagttg
cacatataaactcacagcagctgtgacagaatccataagcctgcataagc
tcaagtcagacaaaatcccagcatggagagggatgtgccatgaagtccta
cccactgctgaggagattagcaatgggaaagctgctgggagagaagggtc
agtttgtgcttgtttgtttgtttaaaggtatgcttctagtaggtcaaaca
tatcgacggacaggccacaccttctaggagtgcatggaaccagcacaaac
ctggaatggaaggcttggaaggacataaaaaacgagtcagtcctagttcc
ctctctgggggag

gaattctctcccaccaaagagctgtatcgagtatttgtcggctgaaattc
atttgaacgtagattcatcggaaacatgtgtggccacaaaagcagcccag
aggaacagaggagtgggggaggggaagagcggggttgtcaaggaagccct
tccttttgttttaaccgatcagacttgtcctcgaaggggctttggctctt
tgatgagagcctctgttctttgtgaccagtctgcacctctttagcttccc
cagaacaggtttcccctaaataaccaggacattcagtccaactcatgacc
ctccagagatcatgaccctgctacggctctgtgcctcagaagacaggaac
attggctaatatccaaccaacttgaagatagtcataataatagatatggt
taattgcatccatcctgtactttataaatgacctactgtgtgtattgtat
gtactgtgtaatagctttccacatactatctctgatcctcacagcaaacg
gaggagatatgtcacccttcatttcatatatgaagatgttggggttagag
gtatgaactttgtagtagcacatgatcattttgtagcttaatcaagtttc
aaacctaagcctgatttatgtatgacttctgctctgtctagatttccaca
acaaaagtcatatgtaacatagagaaaaggatccagactattggatcagg
aaagtttcctgaaagaggcatcatttgggtgtatataaaggacggatgat
atttgtacaaaaggagatacgttacagagacagattgtcaggaaaactgt
tgcatctggatgctgccaggtttgatctccaagagggagtatgggcaatt
ctcatggggcttatgcccacagagcacatcttgacttccaaatgccttga
acaggcttgaccttgaagggcatctagtgtgattgacaggtttggaaaag
gaagggcttaccatgaccacaatgaggcaactgggagtggagacaggatg
ctgggaaggcatgaagaagaccggaaggaggttagagaggagcctagctc
aagggagagcttcacatggataggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_12408497_12409566
seq2: B6Ng01-234C13.g_67_1141

seq1  GAATTCTCTCCCACCAAAGAGCTGTATCGAGTATTTGTCGGCTGAAATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCCACCAAAGAGCTGTATCGAGTATTTGTCGGCTGAAATTC  50

seq1  ATTTGAACGTAGATTCATCGGAAACATGTGTGGCCACAAAAGCAGCCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAACGTAGATTCATCGGAAACATGTGTGGCCACAAAAGCAGCCCAG  100

seq1  AGGAACAGAGGAGTGGGGGAGGGGAAGAGCGGGGTTGTCAAGGAAGCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAGAGGAGTGGGGGAGGGGAAGAGCGGGGTTGTCAAGGAAGCCCT  150

seq1  TCCTTTTGTTTTAACCGATCAGACTTGTCCTCGAAGGGGCTTTGGCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTGTTTTAACCGATCAGACTTGTCCTCGAAGGGGCTTTGGCTCTT  200

seq1  TGATGAGAGCCTCTGTTCTTTGTGACCAGTCTGCACCTCTTTAGCTTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGAGCCTCTGTTCTTTGTGACCAGTCTGCACCTCTTTAGCTTCCC  250

seq1  CAGAACAGGTTTCCCCTAAATAACCAGGACATTCAGTCCAACTCATGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGGTTTCCCCTAAATAACCAGGACATTCAGTCCAACTCATGACC  300

seq1  CTCCAGAGATCATGACCCTGCTACGGCTCTGTGCCTCAGAAGACAGGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAGATCATGACCCTGCTACGGCTCTGTGCCTCAGAAGACAGGAAC  350

seq1  ATTGGCTAATATCCAACCAACTTGAAGATAGTCATAATAATAGATATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTAATATCCAACCAACTTGAAGATAGTCATAATAATAGATATGGT  400

seq1  TAATTGCATCCATCCTGTACTTTATAAATGACCTACTGTGTGTATTGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGCATCCATCCTGTACTTTATAAATGACCTACTGTGTGTATTGTAT  450

seq1  GTACTGTGTAATAGCTTTCCACATACTATCTCTGATCCTCACAGCAAACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGTGTAATAGCTTTCCACATACTATCTCTGATCCTCACAGCAAACG  500

seq1  GAGGAGATATGTCACCCTTCATTTCATATATGAAGATGTTGGGGTTAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGATATGTCACCCTTCATTTCATATATGAAGATGTTGGGGTTAGAG  550

seq1  GTATGAACTTTGTAGTAGCACATGATCATTTTGTAGCTTAATCAAGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAACTTTGTAGTAGCACATGATCATTTTGTAGCTTAATCAAGTTTC  600

seq1  AAACCTAAGCCTGATTTATGTATGACTTCTGCTCTGTCTAGATTTCCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTAAGCCTGATTTATGTATGACTTCTGCTCTGTCTAGATTTCCACA  650

seq1  ACAAAAGTCATATGTAACATAGAGAAAAGGATCCAGACTATTGGATCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGTCATATGTAACATAGAGAAAAGGATCCAGACTATTGGATCAGG  700

seq1  AAAGTTTCCTGAAAGAGGCATCATTTGGGTGTATATAAAGGACGGATGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTCCTGAAAGAGGCATCATTTGGGTGTATATAAAGGACGGATGAT  750

seq1  ATTTGTACAAAAGGAGATACGTTACAGAGACAGATTGTCAGGAAAACTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTACAAAAGGAGATACGTTACAGAGACAGATTGTCAGGAAAACTGT  800

seq1  TGCATCTGGATGCTGCCAGGTTTGATCTCCAAGAGGGAGTATGGGCAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTGGATGCTGCCAGGTTTGATCTCCAAGAGGGAGTATGGGCAATT  850

seq1  CTCAT-GGGCTTATG-CCACAGAGCACA-CCTGACTTCCAAATGCCTTGA  897
      ||||| ||||||||| |||||||||||| | |||||||||||||||||||
seq2  CTCATGGGGCTTATGCCCACAGAGCACATCTTGACTTCCAAATGCCTTGA  900

seq1  ACAGGCTTGACCTGAAGGGGCATCTAGTGTGATTGACAGGTTTGGAAAAG  947
      |||||||||||||  | |||||||||||||||||||||||||||||||||
seq2  ACAGGCTTGACCTTGAAGGGCATCTAGTGTGATTGACAGGTTTGGAAAAG  950

seq1  GAAGGGC-TAACATGACCACAATGAGGCAACT-GGAGTGGAGACAGGAAG  995
      ||||||| || ||||||||||||||||||||| |||||||||||||| | 
seq2  GAAGGGCTTACCATGACCACAATGAGGCAACTGGGAGTGGAGACAGG-AT  999

seq1  GCTGGGAAGGCATG-AGAAGACCGGGAAGGAGGTTAAGAGAGGGAGCTAG  1044
      |||||||||||||| |||||||| ||||||||||| |||||||   ||||
seq2  GCTGGGAAGGCATGAAGAAGACC-GGAAGGAGGTT-AGAGAGGAGCCTAG  1047

seq1  TTACAGGGAGAGC-TCACAT-GATAGGC  1070
       |  ||||||||| |||||| |||||||
seq2  CTCAAGGGAGAGCTTCACATGGATAGGC  1075


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