BAC Information

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BAC

Clone NameB6Ng01-235F12
Chromosome12 (Build37)
Map Location 25,717,571 - 25,877,747
singlet/doubletdoublet
Overlap geneC330002I19Rik, Id2
Upstream gene9030624G23Rik, EG668710, LOC100042945, EG668711, EG668714, LOC629364, Taf1b, Grhl1, EG629383, Klf11, Cys1, Rrm2, LOC668719, Mboat2, EG629397
Downstream geneLOC100042973, LOC100042974, LOC668726
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235F12.bB6Ng01-235F12.g
ACCGA046842GA046843
length1,161835
definitionB6Ng01-235F12.b B6Ng01-235F12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,876,591 - 25,877,747)(25,717,571 - 25,718,404)
sequence
gaattccaacttccattgtagagtctacaccatagagagacagggagttg
atagtgagatggaagcaagaaagatttgttcttgcccccccccccaaagt
aggaatcgccctgatttcccacccactgtgaccaggaatgagtctcaggg
catcaccacacctcaacaaagcccctggatgaaggagatggcccacactc
atgagactaacagaaactagagaaggcttcctggaggtgccattgtgtag
ctggattcacaaagagaagtctgccataccaaagaggcagagtatgacaa
aggccagaaatcccagcagcttgagactagtccacttctggattcattgc
tccgctccccccacaactctgtgggcatctgaaatgggaggctgagacag
gaagcaccaacccagggagcaggctgcagaaagctgtgcagaagcacact
catctgtcagagccacagcaacgcctcacctaggaaggagcgcggcaagc
agaggctttctgatgtgactgtttcctcaagaaagaagagagtgcgtgga
gctgggtctgctaagtgctcgaggttttggaaagccaaaggaactaagtt
tgagtcctcagaacactcacatttgaaagttttaaagcttggcagggtga
aacactcatgcactcttagtgttggggcggtagaatctgatggctgcccc
ggggctccatgtccagttagtcaacaaagaaaagaaaagaaactgagcac
agcggccactgtctttaaccccctgcactcaggaagcagggctgggtgga
tctctgtgagtttgaggcaagcctggtctacaaagtgagttccaggctaa
ccagggctacaaagtaaaaccctctctgaaaaaaaaaattttttttaaga
aattttttaaaagacagacagtacctgggggaacagcagatgaggttgta
ctatggtggtctatatgtttataaaatacatgtatatacaaacacacaca
ctcacacacacatgcacacagtggattgggaaagaaatggacaggcatgg
ccaggtgacttcttagacttcagagaggaaattggaggtacattctggaa
ccaggccaggtgggcatatgttcatcttggccaggtgatggcccaaagaa
tgggttatgga
gaattctaggcactggagatgtactaaagttttgacaaagttggagtcaa
aaccaactttaatggaagggacagtctggagagggagtaagatgtttaag
aagatacttgcactagtaggtgtacatctggcgtgcaggagagtaaggac
cttaggtctgtcatagaggaatacgagcgtccttcaggtaggcttcccta
agcaagagaattgtgctgaatgcaaaggatgactgagaagtaagtgggtg
aagacaggaggagagagtgtctagggttttgtctgtctttccaaagatat
tagtagtaaaaaaaaaaaatgagttttatggggctagagagatggtgcaa
cagttaagagtacgtactgaacgccagaggactcaagtatagttcctagc
acacatatggcagttgacaaacttctgtcccatgattttttgcactcatg
tgcacatatatcaacattcaggcatatacacctataatttatgtcattta
aaattacttttaaaatgagttgtgtggtatcttttgtttctgactctggc
attacagtgggtggcttttgttgttttttccttcattgctagtgattgaa
cctagggctttgtgggtgctaagcaagcaccctttcatgaaggtacatcc
ccagcactgagtgggcctttctgtctgtattattgtgagggtcgtctgga
agttaagtttgtctcaagtgtaatacagttccaaggcagatgagagctta
taaagatgtttggattgcctagcattcgtgaaaccctgggctttgatcat
cagtgagtgaaaattgggaggtggagtggggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_25876591_25877747
seq2: B6Ng01-235F12.b_46_1206 (reverse)

seq1  TCCATAA--CATCTCTTGGGCCACTTCA-CTGGCCAGGATG-ACATATGC  46
      |||||||  |||   ||||||||  ||| ||||||| |||| ||||||||
seq2  TCCATAACCCATTCTTTGGGCCA--TCACCTGGCCAAGATGAACATATGC  48

seq1  CCACTGGGCCTGGGTTCCAGATGGTACCTTCCAATTTCCTCTCTGAAGTC  96
      ||||  ||||| |||||||||  ||||| |||||||||||||||||||||
seq2  CCACCTGGCCT-GGTTCCAGAATGTACC-TCCAATTTCCTCTCTGAAGTC  96

seq1  TAAGAAGTCACTTGCCAATGCTTGTCAATTTCTTT-CCAAT-CACTGTGT  144
      ||||||||||| || | |||| |||| |||||||| ||||| ||||||||
seq2  TAAGAAGTCACCTGGCCATGCCTGTCCATTTCTTTCCCAATCCACTGTGT  146

seq1  GCATGTGTGTGTGAGTGTGTGTGTTTGTATATACATGTA-TTTATAAACA  193
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCATGTGTGTGTGAGTGTGTGTGTTTGTATATACATGTATTTTATAAACA  196

seq1  TATAGA-CACCATAGTACAACCTCATCTGCTGTT-CCCCAGGTACTGTCT  241
      |||||| ||||||||||||||||||||||||||| |||||||||||||||
seq2  TATAGACCACCATAGTACAACCTCATCTGCTGTTCCCCCAGGTACTGTCT  246

seq1  GTCTTTTAAAAAATTTCTTTAAAAAAAATTTTTTTTTTCAGAGAGGGTTT  291
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTCTTTTAAAAAATTTC-TTAAAAAAAATTTTTTTTTTCAGAGAGGGTTT  295

seq1  TACTTTGTAGCCCTGGTTAGCCTGGAACTCACTTTGTAGACCAGGCTTGC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTAGCCCTGGTTAGCCTGGAACTCACTTTGTAGACCAGGCTTGC  345

seq1  CTCAAACTCACAGAGATCCACCCAGCCCTGCTTCCTGAGTGCAGGGGGTT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACTCACAGAGATCCACCCAGCCCTGCTTCCTGAGTGCAGGGGGTT  395

seq1  AAAGACAGTGGCCGCTGTGCTCAGTTTCTTTTCTTTTCTTTGTTGACTAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAGTGGCCGCTGTGCTCAGTTTCTTTTCTTTTCTTTGTTGACTAA  445

seq1  CTGGACATGGAGCCCCGGGGCAGCCATCAGATTCTACCGCCCCAACACTA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACATGGAGCCCCGGGGCAGCCATCAGATTCTACCGCCCCAACACTA  495

seq1  AGAGTGCATGAGTGTTTCACCCTGCCAAGCTTTAAAACTTTCAAATGTGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCATGAGTGTTTCACCCTGCCAAGCTTTAAAACTTTCAAATGTGA  545

seq1  GTGTTCTGAGGACTCAAACTTAGTTCCTTTGGCTTTCCAAAACCTCGAGC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTGAGGACTCAAACTTAGTTCCTTTGGCTTTCCAAAACCTCGAGC  595

seq1  ACTTAGCAGACCCAGCTCCACGCACTCTCTTCTTTCTTGAGGAAACAGTC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCAGACCCAGCTCCACGCACTCTCTTCTTTCTTGAGGAAACAGTC  645

seq1  ACATCAGAAAGCCTCTGCTTGCCGCGCTCCTTCCTAGGTGAGGCGTTGCT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGAAAGCCTCTGCTTGCCGCGCTCCTTCCTAGGTGAGGCGTTGCT  695

seq1  GTGGCTCTGACAGATGAGTGTGCTTCTGCACAGCTTTCTGCAGCCTGCTC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCTGACAGATGAGTGTGCTTCTGCACAGCTTTCTGCAGCCTGCTC  745

seq1  CCTGGGTTGGTGCTTCCTGTCTCAGCCTCCCATTTCAGATGCCCACAGAG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTTGGTGCTTCCTGTCTCAGCCTCCCATTTCAGATGCCCACAGAG  795

seq1  TTGTGGGGGGAGCGGAGCAATGAATCCAGAAGTGGACTAGTCTCAAGCTG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGGGGAGCGGAGCAATGAATCCAGAAGTGGACTAGTCTCAAGCTG  845

seq1  CTGGGATTTCTGGCCTTTGTCATACTCTGCCTCTTTGGTATGGCAGACTT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTTCTGGCCTTTGTCATACTCTGCCTCTTTGGTATGGCAGACTT  895

seq1  CTCTTTGTGAATCCAGCTACACAATGGCACCTCCAGGAAGCCTTCTCTAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGTGAATCCAGCTACACAATGGCACCTCCAGGAAGCCTTCTCTAG  945

seq1  TTTCTGTTAGTCTCATGAGTGTGGGCCATCTCCTTCATCCAGGGGCTTTG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTAGTCTCATGAGTGTGGGCCATCTCCTTCATCCAGGGGCTTTG  995

seq1  TTGAGGTGTGGTGATGCCCTGAGACTCATTCCTGGTCACAGTGGGTGGGA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTGTGGTGATGCCCTGAGACTCATTCCTGGTCACAGTGGGTGGGA  1045

seq1  AATCAGGGCGATTCCTACTTTGGGGGGGGGGGCAAGAACAAATCTTTCTT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGGCGATTCCTACTTTGGGGGGGGGGGCAAGAACAAATCTTTCTT  1095

seq1  GCTTCCATCTCACTATCAACTCCCTGTCTCTCTATGGTGTAGACTCTACA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCATCTCACTATCAACTCCCTGTCTCTCTATGGTGTAGACTCTACA  1145

seq1  ATGGAAGTTGGAATTC  1157
      ||||||||||||||||
seq2  ATGGAAGTTGGAATTC  1161

seq1: chr12_25717571_25718404
seq2: B6Ng01-235F12.g_66_900

seq1  GAATTCTAGGCACTGGAGATGTACTAAAGTTTTGACAAAGTTGGAGTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGCACTGGAGATGTACTAAAGTTTTGACAAAGTTGGAGTCAA  50

seq1  AACCAACTTTAATGGAAGGGACAGTCTGGAGAGGGAGTAAGATGTTTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACTTTAATGGAAGGGACAGTCTGGAGAGGGAGTAAGATGTTTAAG  100

seq1  AAGATACTTGCACTAGTAGGTGTACATCTGGCGTGCAGGAGAGTAAGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACTTGCACTAGTAGGTGTACATCTGGCGTGCAGGAGAGTAAGGAC  150

seq1  CTTAGGTCTGTCATAGAGGAATACGAGCGTCCTTCAGGTAGGCTTCCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGTCTGTCATAGAGGAATACGAGCGTCCTTCAGGTAGGCTTCCCTA  200

seq1  AGCAAGAGAATTGTGCTGAATGCAAAGGATGACTGAGAAGTAAGTGGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAGAATTGTGCTGAATGCAAAGGATGACTGAGAAGTAAGTGGGTG  250

seq1  AAGACAGGAGGAGAGAGTGTCTAGGGTTTTGTCTGTCTTTCCAAAGATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGGAGGAGAGAGTGTCTAGGGTTTTGTCTGTCTTTCCAAAGATAT  300

seq1  TAGTAGTAAAAAAAAAAAATGAGTTTTATGGGGCTAGAGAGATGGTGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTAAAAAAAAAAAATGAGTTTTATGGGGCTAGAGAGATGGTGCAA  350

seq1  CAGTTAAGAGTACGTACTGAACGCCAGAGGACTCAAGTATAGTTCCTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAGAGTACGTACTGAACGCCAGAGGACTCAAGTATAGTTCCTAGC  400

seq1  ACACATATGGCAGTTGACAAACTTCTGTCCCATGATTTTTTGCACTCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATGGCAGTTGACAAACTTCTGTCCCATGATTTTTTGCACTCATG  450

seq1  TGCACATATATCAACATTCAGGCATATACACCTATAATTTATGTCATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATATATCAACATTCAGGCATATACACCTATAATTTATGTCATTTA  500

seq1  AAATTACTTTTAAAATGAGTTGTGTGGTATCTTTTGTTTCTGACTCTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTTTTAAAATGAGTTGTGTGGTATCTTTTGTTTCTGACTCTGGC  550

seq1  ATTACAGTGGGTGGCTTTTGTTGTTTTTTCCTTCATTGCTAGTGATTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGTGGGTGGCTTTTGTTGTTTTTTCCTTCATTGCTAGTGATTGAA  600

seq1  CCTAGGGCTTTGTGGGTGCTAAGCAAGCACCCTTTCATGAAGGTACATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGGCTTTGTGGGTGCTAAGCAAGCACCCTTTCATGAAGGTACATCC  650

seq1  CCAGCACTGAGTGGGCCTTTCTGTCTGTATTATTGTGAGGGTCGTCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTGAGTGGGCCTTTCTGTCTGTATTATTGTGAGGGTCGTCTGGA  700

seq1  AGTTAAGTTTGTCTCAAGTGTAATACAGTTCCAAGGCAGATGAGAGCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGTTTGTCTCAAGTGTAATACAGTTCCAAGGCAGATGAGAGCTTA  750

seq1  TAAAGATGTTTGGATTGCCTAGCATTCGTGAAACCCTGGGC-TTGATCAT  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAAAGATGTTTGGATTGCCTAGCATTCGTGAAACCCTGGGCTTTGATCAT  800

seq1  CAGTGAGTGAAAATTGGGAGGTGGAGTGGGGTGGG  834
      |||||||||||||||||||||||||||||||||||
seq2  CAGTGAGTGAAAATTGGGAGGTGGAGTGGGGTGGG  835