BAC Information

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BAC

Clone NameB6Ng01-236E09
Chromosome12 (Build37)
Map Location 31,830,037 - 31,831,172
singlet/doubletsinglet
Overlap geneLOC100043065
Upstream geneSntg2, Tmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781
Downstream geneLOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236E09.bB6Ng01-236E09.g
ACCGA047532GA047533
length1,1411,166
definitionB6Ng01-236E09.b B6Ng01-236E09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacgttgaactaacttaagaggaaaattcatcttatttaagagga
aaatgctttggagtgttctttttgggtttgaatcatttccccccacacaa
tgaaagggatgcctggcaggaaatcaaggaactccttgggtcctggcttc
tctgcctctctccttcttttcctctcagatgttatagttttatttggtcg
gaaggattccctgacaaacatcttcataccactcctgtaaacttaggaga
agtccatctactcatctctcagcagcgcagctcagtctccggccctgcag
actagagaggtctcatttgtcagttggaaggaaccttgattgcttagcct
ggggattcgaaggtgccaaaagccaagcctgccctttaggcttgcttaac
gaatgtgtacagttgaggctcttcttaaatacccaaagagctccttacga
ctttcaaagcactgctgatgggctgctcagtagctcttgactctctggaa
agactcagattttcgtaggcctccaggaagtggctgtttgttgtagtcct
ctgtaccagaaaacatgaacaatagcactggtcttgggcagacactcagc
aaactttgtttaattgtatttccttactctggtttccaggcccagtcctg
gtcagacctggtgtgtgacacgaatgcttaggtgtcaggaaaggaggtta
gaaggtcgagagacttcaaggagactatttgcattcctgataaaggctgc
tgatagataggcaactactggccagcatccagacatatgccagttcattt
gggctgcacagggccagtgacacacaggccacagtgacccacagtggcag
gtctacaagcctacagacaaacacacataggcaggctggcaaaggctctg
gcctctgatagtaagactgtattcatgtagaatcacagaaaagtcacact
ctaccaaaaatagttctataacagactatgtaattgtttattttggggtc
tccaaatttcagttatcagacattttgtgctgactcatagatttccccct
cccatcacacccctgcccatgcccctgtcagaaatgtttttgctgaactc
atagccagatatttcatacctctgttcaaggtgtaaacagg
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagataaaaaattcaggtgacagc
agatgctagcgaggatgtggagaaagaggaacactcctccattcctggtg
ggaaatcggtctggcggttcctcagaaaactggatatagtactaccggag
gatcctgcaatacctctcatgggcatatatccagaagatgttccaactgg
taagaaggacacatgctccactatgttcatagcagccttatttataatag
ccagaagctggaaagaacccagatgcccctcaacagaggaatggatacag
aaaatgtggtacatatacacaatggagtactactcagctattaaaaagaa
tgaatttatgaaattcctaggcaaatggatggacctggagggtatcatcc
tgagtgaggtaacccaatcacaaaggaactcacacaatatgtactcactg
ataagtggatattagcccagaaacttaggatacccaagatataagataca
atttgctaaacgcatgaaactgaagaagaacgaagtccaaagtgtggaca
ctttgccccttcttagaattgggaacaaaacacccatggaaggagttaca
gagacaaagtttggagctgtgtcaaaaagatggaccatctagagcctgcc
atatccagggttccatcccataatcagcttccaaacactgacaccattgc
atacactagtaagattttgctgaaaggacccagatgtagctgtctcttgt
gagactatgccggggcctagcaaacacagcagttgaatgctcacagtcag
ctattggatagatcacagggcccccaatgggaggagctagagaaagtaac
acaaaggagctaaagggatctgcaaccctataagtaggaacattatggaa
ctaaccagtaccccgggagctctggacttctagctgcatatgtatcaagg
atgggctagtcggcatcactgggaaggagaggccattggacttgcaaacc
tttaattgcccagtacaggggaactgcagggtcctaaaaatgtgggaagg
gggttgtgggggttag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_31830037_31831172
seq2: B6Ng01-236E09.b_44_1184 (reverse)

seq1  CCTGTCTACA-CTTGAACA-AGGTATG-AATATCT-GCTATGAG-TCAGC  45
      ||||| |||| |||||||| ||||||| ||||||| |||||||| |||||
seq2  CCTGTTTACACCTTGAACAGAGGTATGAAATATCTGGCTATGAGTTCAGC  50

seq1  AAAAACATGTCTGACAAGGGCATGGGCA-GGGTGTGATGGGAGGGGGAAA  94
      |||||||| ||||||| ||||||||||| |||||||||||||||||||||
seq2  AAAAACATTTCTGACAGGGGCATGGGCAGGGGTGTGATGGGAGGGGGAAA  100

seq1  TCTATGAGTCAGCACAAAATGTCTGATACCTGATATTTGGAGAACCCCAA  144
      |||||||||||||||||||||||||||| |||| |||||||| |||||||
seq2  TCTATGAGTCAGCACAAAATGTCTGATAACTGAAATTTGGAG-ACCCCAA  149

seq1  AATAAACAATTACATAGTCTGTTATAGAACTATTTTTGGTAGAGTGTGAC  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAATTACATAGTCTGTTATAGAACTATTTTTGGTAGAGTGTGAC  199

seq1  TTTTCTGTGATTCTACATGAATACAGTCTTACTATCAGAGGCCAGAGCCT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTGATTCTACATGAATACAGTCTTACTATCAGAGGCCAGAGCCT  249

seq1  TTGCCAGCCTGCCTATGTGTGTTTGTCTGTAGGCTTGTAGACCTGCCACT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGCCTGCCTATGTGTGTTTGTCTGTAGGCTTGTAGACCTGCCACT  299

seq1  GTGGGTCACTGTGGCCTGTGTGTCACTGGCCCTGTGCAGCCCAAATGAAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTCACTGTGGCCTGTGTGTCACTGGCCCTGTGCAGCCCAAATGAAC  349

seq1  TGGCATATGTCTGGATGCTGGCCAGTAGTTGCCTATCTATCAGCAGCCTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATATGTCTGGATGCTGGCCAGTAGTTGCCTATCTATCAGCAGCCTT  399

seq1  TATCAGGAATGCAAATAGTCTCCTTGAAGTCTCTCGACCTTCTAACCTCC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGAATGCAAATAGTCTCCTTGAAGTCTCTCGACCTTCTAACCTCC  449

seq1  TTTCCTGACACCTAAGCATTCGTGTCACACACCAGGTCTGACCAGGACTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGACACCTAAGCATTCGTGTCACACACCAGGTCTGACCAGGACTG  499

seq1  GGCCTGGAAACCAGAGTAAGGAAATACAATTAAACAAAGTTTGCTGAGTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGAAACCAGAGTAAGGAAATACAATTAAACAAAGTTTGCTGAGTG  549

seq1  TCTGCCCAAGACCAGTGCTATTGTTCATGTTTTCTGGTACAGAGGACTAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCAAGACCAGTGCTATTGTTCATGTTTTCTGGTACAGAGGACTAC  599

seq1  AACAAACAGCCACTTCCTGGAGGCCTACGAAAATCTGAGTCTTTCCAGAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAGCCACTTCCTGGAGGCCTACGAAAATCTGAGTCTTTCCAGAG  649

seq1  AGTCAAGAGCTACTGAGCAGCCCATCAGCAGTGCTTTGAAAGTCGTAAGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGAGCTACTGAGCAGCCCATCAGCAGTGCTTTGAAAGTCGTAAGG  699

seq1  AGCTCTTTGGGTATTTAAGAAGAGCCTCAACTGTACACATTCGTTAAGCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTTGGGTATTTAAGAAGAGCCTCAACTGTACACATTCGTTAAGCA  749

seq1  AGCCTAAAGGGCAGGCTTGGCTTTTGGCACCTTCGAATCCCCAGGCTAAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAAAGGGCAGGCTTGGCTTTTGGCACCTTCGAATCCCCAGGCTAAG  799

seq1  CAATCAAGGTTCCTTCCAACTGACAAATGAGACCTCTCTAGTCTGCAGGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAAGGTTCCTTCCAACTGACAAATGAGACCTCTCTAGTCTGCAGGG  849

seq1  CCGGAGACTGAGCTGCGCTGCTGAGAGATGAGTAGATGGACTTCTCCTAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGACTGAGCTGCGCTGCTGAGAGATGAGTAGATGGACTTCTCCTAA  899

seq1  GTTTACAGGAGTGGTATGAAGATGTTTGTCAGGGAATCCTTCCGACCAAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACAGGAGTGGTATGAAGATGTTTGTCAGGGAATCCTTCCGACCAAA  949

seq1  TAAAACTATAACATCTGAGAGGAAAAGAAGGAGAGAGGCAGAGAAGCCAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTATAACATCTGAGAGGAAAAGAAGGAGAGAGGCAGAGAAGCCAG  999

seq1  GACCCAAGGAGTTCCTTGATTTCCTGCCAGGCATCCCTTTCATTGTGTGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAAGGAGTTCCTTGATTTCCTGCCAGGCATCCCTTTCATTGTGTGG  1049

seq1  GGGGAAATGATTCAAACCCAAAAAGAACACTCCAAAGCATTTTCCTCTTA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAATGATTCAAACCCAAAAAGAACACTCCAAAGCATTTTCCTCTTA  1099

seq1  AATAAGATGAATTTTCCTCTTAAGTTAGTTCAACGTGAATTC  1136
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGATGAATTTTCCTCTTAAGTTAGTTCAACGTGAATTC  1141