BAC Information

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BAC

Clone NameB6Ng01-236J04
Chromosome12 (Build37)
Map Location 39,571,317 - 39,572,486
singlet/doubletsinglet
Overlap geneEtv1
Upstream geneDgkb, LOC668824, LOC100043142
Downstream geneLOC100043145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236J04.bB6Ng01-236J04.g
ACCGA047758GA047759
length1,1751,077
definitionB6Ng01-236J04.b B6Ng01-236J04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatgtttctgagacacaatggcagcgtagtggcacacagtggca
tatgactttccctatgaaactacaaatatttctcataagcttctgggcta
tttttggatagtatcacatacaaaacataagcaggtctaaacagtttatg
aacattctaaacccaggattttgtaagttttacagggttgtgatttcatt
aagctagtcaaaaataaggttaaagtatcagaagacaggagcagcattgt
gatttggggtatttactcaataatgccatagtgtggcagttaacacatag
tatggcagttaaaagtaaatatgagaaccaaggccattgactgactcaag
gattcacaacaacagtctgcagtgaagaatttgatactgagtacccagtt
ggtcctgatttgtttcccattggacgctggatgatttgaaaggagagtat
gggaggtagagtctttcctcttggtttcatctttcctgggattcctacca
tattgggataatttgttctgcttgcttctaataaaaatggaacaagtaac
agattttagcttgaactaggtcagacacagcatactggattcatatatga
tggctttagtagaatatctcttacacttcatgttatcctctaacctgagg
tatgagtttatggcactttgttgaaggactttgaagaaatctacagaaat
catgataaaaatcatcccactgagtatccttcatcggtgccaggtctgct
aatctatgctggatactgtgttaggcactgcttaaacatgacaatatttc
atctctacaaatacactaagggcccctttggaaataagtaaattgggagg
caaaagaaatcgcaaagcttgctccatatgatacaaatggtcaacagata
tcaggcccaggagttggtgttttcaaatgtcacacgaactgagtgatttt
acaatttaatgctgaacataactaaaaagcagatcatagtaatacagcaa
taagctcttaagctcacaacaggaaagaggagttaaaatcaaagttaaga
gatcttattaaataatcacacctagcactgctcaattgacaactttattt
ggctttttggagtatttttcccaattcatttgggattatcttgtcttagg
aaagttaccgacactattaacagca

gaattccaagtaaaggtcccataaaatatttttaacaaaatcatagaaga
aaattttcctaacctaaaggcaatgtctgaaaagatacaagacgcttaca
gaacaccaaatagattagatcagaaaagaaagtccctattcaacataata
atcaaaacactagacgtacagaacaaagaaagaatattaaaagctgcaaa
gtaaaatgttgaataatatatataaacagacctattagagtgatacccaa
cttctcaatggaaactctaaaagccagaagggcctggacacatgttctgc
cgactcaaatagatcacagatgccatcacaaactgctttacccagtaaaa
cgtttaattaccatagagggaaaaaataacacacttcatgataaagtttg
gtttaaataatatttatgcacaaattcagtcttacataagaaactaaaag
aaaaattccaactgaaggagttcaacatacatgcaaaaaaaaaaatacag
gaaataagtaaatgcaaaacaacaaaaacaaaagaaaggaaacacacaga
gactattatcaacaaccacataaaactaataggaataaatgatcactgat
cattaatatctatgaactcagttctccaacaaaacgaccaaggcagtcca
ggaaatggaaagcctaggaaagagaaccggaactatgtaagcatcacaac
taaagtacagaagatgaaagagagaaccttaggcatagaatatacaatag
ataataaatcaatatatcagtcaaagaaagtgcaaaatctaaaaagatcg
taacatctaaaaagtccaggaaatttgggactctatgaaaagaccaaacc
aaagaataataggcatacaaaaaggagaaaatacctagttcaaagggacc
agaaaacatcttgaacaaaattatagaagaaaaatttcctaacttaaaga
aatagatgcctataaacatataaaatgtatgcatcaagcagattggacag
gaaaaagatgagaagacgacgagacgaagaagagaagagaagagatgaag
aagagaaggaagggggggagggaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_39571317_39572486
seq2: B6Ng01-236J04.b_43_1217 (reverse)

seq1  TGCTGTTAATAGTTGTTGGTAACTTTCTTAAGGACAGATAAT-CCAAATG  49
      |||||||||||| ||| |||||||||| ||||   ||||||| |||||||
seq2  TGCTGTTAATAG-TGTCGGTAACTTTCCTAAGACAAGATAATCCCAAATG  49

seq1  AAT--GGGAAAATACTCAAAAAAGCCAAATAAAGTTGTCAAATGAGCAGT  97
      |||  || ||||||||| ||||||||||||||||||||||| ||||||||
seq2  AATTGGGAAAAATACTCCAAAAAGCCAAATAAAGTTGTCAATTGAGCAGT  99

seq1  GCTAGGGTTGTGATTATTTAAT-AGATCTC-TAACTTTGATTTTAACTCC  145
      ||||||  |||||||||||||| ||||||| |||||||||||||||||||
seq2  GCTAGG--TGTGATTATTTAATAAGATCTCTTAACTTTGATTTTAACTCC  147

seq1  TCTTT-CTG-TGTGAGCCTTAAGAGCTTATTGCTGTATTACTGTGATCTG  193
      ||||| ||| |||||| ||||||||||||||||||||||||| |||||||
seq2  TCTTTCCTGTTGTGAG-CTTAAGAGCTTATTGCTGTATTACTATGATCTG  196

seq1  CTTTTTAGTTATGTTCAGCATT-AATTGTAAAATCACTCAGTTCGTGTGA  242
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTTTTTAGTTATGTTCAGCATTAAATTGTAAAATCACTCAGTTCGTGTGA  246

seq1  CATTTGAAAACACCAACTCCTGGGCCTGATATCTGTTGACCATTTGTATC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAAAACACCAACTCCTGGGCCTGATATCTGTTGACCATTTGTATC  296

seq1  ATATGGAGCAAGCTTTGCGATTTCTTTTGCCTCCCAATTTACTTATTTCC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAGCAAGCTTTGCGATTTCTTTTGCCTCCCAATTTACTTATTTCC  346

seq1  AAAGGGG-CCTTAGTGTATTTGTAGAGATGAAATATTGTCATGTTTAAGC  391
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGCCCTTAGTGTATTTGTAGAGATGAAATATTGTCATGTTTAAGC  396

seq1  AGTGCCTAACACAGTATCCAGCATAGATTAGCAGACCTGGCACCGATGAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTAACACAGTATCCAGCATAGATTAGCAGACCTGGCACCGATGAA  446

seq1  GGATACTCAGTGGGATGATTTTTATCATGATTTCTGTAGATTTCTTCAAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTCAGTGGGATGATTTTTATCATGATTTCTGTAGATTTCTTCAAA  496

seq1  GTCCTTCAACAAAGTGCCATAAACTCATACCTCAGGTTAGAGGATAACAT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCAACAAAGTGCCATAAACTCATACCTCAGGTTAGAGGATAACAT  546

seq1  GAAGTGTAAGAGATATTCTACTAAAGCCATCATATATGAATCCAGTATGC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTAAGAGATATTCTACTAAAGCCATCATATATGAATCCAGTATGC  596

seq1  TGTGTCTGACCTAGTTCAAGCTAAAATCTGTTACTTGTTCCATTTTTATT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGACCTAGTTCAAGCTAAAATCTGTTACTTGTTCCATTTTTATT  646

seq1  AGAAGCAAGCAGAACAAATTATCCCAATATGGTAGGAATCCCAGGAAAGA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAAGCAGAACAAATTATCCCAATATGGTAGGAATCCCAGGAAAGA  696

seq1  TGAAACCAAGAGGAAAGACTCTACCTCCCATACTCTCCTTTCAAATCATC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCAAGAGGAAAGACTCTACCTCCCATACTCTCCTTTCAAATCATC  746

seq1  CAGCGTCCAATGGGAAACAAATCAGGACCAACTGGGTACTCAGTATCAAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTCCAATGGGAAACAAATCAGGACCAACTGGGTACTCAGTATCAAA  796

seq1  TTCTTCACTGCAGACTGTTGTTGTGAATCCTTGAGTCAGTCAATGGCCTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCACTGCAGACTGTTGTTGTGAATCCTTGAGTCAGTCAATGGCCTT  846

seq1  GGTTCTCATATTTACTTTTAACTGCCATACTATGTGTTAACTGCCACACT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCATATTTACTTTTAACTGCCATACTATGTGTTAACTGCCACACT  896

seq1  ATGGCATTATTGAGTAAATACCCCAAATCACAATGCTGCTCCTGTCTTCT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATTATTGAGTAAATACCCCAAATCACAATGCTGCTCCTGTCTTCT  946

seq1  GATACTTTAACCTTATTTTTGACTAGCTTAATGAAATCACAACCCTGTAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTTTAACCTTATTTTTGACTAGCTTAATGAAATCACAACCCTGTAA  996

seq1  AACTTACAAAATCCTGGGTTTAGAATGTTCATAAACTGTTTAGACCTGCT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACAAAATCCTGGGTTTAGAATGTTCATAAACTGTTTAGACCTGCT  1046

seq1  TATGTTTTGTATGTGATACTATCCAAAAATAGCCCAGAAGCTTATGAGAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTGTATGTGATACTATCCAAAAATAGCCCAGAAGCTTATGAGAA  1096

seq1  ATATTTGTAGTTTCATAGGGAAAGTCATATGCCACTGTGTGCCACTACGC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGTAGTTTCATAGGGAAAGTCATATGCCACTGTGTGCCACTACGC  1146

seq1  TGCCATTGTGTCTCAGAAACATTGAATTC  1170
      |||||||||||||||||||||||||||||
seq2  TGCCATTGTGTCTCAGAAACATTGAATTC  1175


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