BAC Information

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BAC

Clone NameB6Ng01-237I14
Chromosome12 (Build37)
Map Location 47,001,433 - 47,002,485
singlet/doubletsinglet
Overlap genenone
Upstream geneStxbp6
Downstream geneLOC664952, Nova1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237I14.bB6Ng01-237I14.g
ACCGA048467GA048468
length1,0511,167
definitionB6Ng01-237I14.b B6Ng01-237I14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactttgcaagtggttggtttgtgcaaccggtgctcccatttaaa
aagaccatggattgaactttaccaaaactaggtaagagtttcttcatgaa
tcgatattgtttccacttgttgtccttcaactaccgatgcatgaaggaag
ttgtctaaaaagcaacttaccttttatcattgttagaggtttgggatcac
tcagagattcaccatgaccatgaatgaattttagcaacaagaaaagtgat
ttagtaaatactgacagtggatactctgggcagcaggactgcatccaaga
gcaccttcaaggtgcagctccaaagtacttgagtttgaggtttctaaagg
cagaaatcacaaggctatgcactccctgccttccagaaaccagtagaatg
cacacatcctgacatgcttcttgcctatgtgccatcaagcacacatctgg
tagtcatgctgtcaagggcaagcaagcttgttctcaggagcaaaaccacg
tggtatgtacaagatcagcccccagttatctgttcttgaggacttacagt
taggttcatttttgtttttatagttcccttaaggttagtgattttaaact
ttgaaacatgacgttcaccatcacaacatgagcttgcagctgttgtcctg
aacaactgaaaggaactcctttgcccttttccgtggaaggatgatgtcac
cgcctttctcttttgttcccttaaatgacggaacacaaacactgtttgcc
atattggtttgcacattaataagcgcaacataaaaccaaattgcaaggcc
gtgcttcttcccaagctgttctcccatgttaatgctttcctgcagccctg
acagatgctcagacgccaaaatatcctccagaagacgaggctaatggagc
tactatttatacaacgttgggaaccttgaaatcactaaatccatttctat
gattcctaatagtaaaatatgaacatttgggccaaagacattgttcctac
agtttaaattgatatctttatagaaaaatcgcagaaagcataaagctcat
a
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ctcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactatggaaatcagtctggcggttcctca
gaaaactggatattgtactaacggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atgggtggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taagatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtgaacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagataa
aaggatggaccatgtagacactaccatatcccggggatccatcccataat
cagcttccaaatgctgacaccattgcatacactagcaagattatgctgaa
aggaccctgatatagctgtctcttgtcagagtatgcctgggcctagcaat
atagaagtggatgctcacagtcggctattggatggatcacatgggcccca
atgaaggagcttgagaagtaccaagaagctaaagggatctgcaaccctat
agtgacaacatatgactaccagtaccccggagctctgactctagctgcat
attgcatcaaagattgctagttcggcaatcactgggaaagagagtccatt
gacatcgccaacttaatgcccagtctggacgccagtcataaaaggatggt
gtggatgaagggcagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_47001433_47002485
seq2: B6Ng01-237I14.b_43_1093

seq1  GAATTCACTTTGCAAGTGGTTGGTTTGTGCAACCGGTGCTCCCATTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGCAAGTGGTTGGTTTGTGCAACCGGTGCTCCCATTTAAA  50

seq1  AAGACCATGGATTGAACTTTACCAAAACTAGGTAAGAGTTTCTTCATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCATGGATTGAACTTTACCAAAACTAGGTAAGAGTTTCTTCATGAA  100

seq1  TCGATATTGTTTCCACTTGTTGTCCTTCAACTACCGATGCATGAAGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATATTGTTTCCACTTGTTGTCCTTCAACTACCGATGCATGAAGGAAG  150

seq1  TTGTCTAAAAAGCAACTTACCTTTTATCATTGTTAGAGGTTTGGGATCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAAAAAGCAACTTACCTTTTATCATTGTTAGAGGTTTGGGATCAC  200

seq1  TCAGAGATTCACCATGACCATGAATGAATTTTAGCAACAAGAAAAGTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGATTCACCATGACCATGAATGAATTTTAGCAACAAGAAAAGTGAT  250

seq1  TTAGTAAATACTGACAGTGGATACTCTGGGCAGCAGGACTGCATCCAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAAATACTGACAGTGGATACTCTGGGCAGCAGGACTGCATCCAAGA  300

seq1  GCACCTTCAAGGTGCAGCTCCAAAGTACTTGAGTTTGAGGTTTCTAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTTCAAGGTGCAGCTCCAAAGTACTTGAGTTTGAGGTTTCTAAAGG  350

seq1  CAGAAATCACAAGGCTATGCACTCCCTGCCTTCCAGAAACCAGTAGAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCACAAGGCTATGCACTCCCTGCCTTCCAGAAACCAGTAGAATG  400

seq1  CACACATCCTGACATGCTTCTTGCCTATGTGCCATCAAGCACACATCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATCCTGACATGCTTCTTGCCTATGTGCCATCAAGCACACATCTGG  450

seq1  TAGTCATGCTGTCAAGGGCAAGCAAGCTTGTTCTCAGGAGCAAAACCACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATGCTGTCAAGGGCAAGCAAGCTTGTTCTCAGGAGCAAAACCACG  500

seq1  TGGTATGTACAAGATCAGCCCCCAGTTATCTGTTCTTGAGGACTTACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGTACAAGATCAGCCCCCAGTTATCTGTTCTTGAGGACTTACAGT  550

seq1  TAGGTTCATTTTTGTTTTTATAGTTCCCTTAAGGTTAGTGATTTTAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCATTTTTGTTTTTATAGTTCCCTTAAGGTTAGTGATTTTAAACT  600

seq1  TTGAAACATGACGTTCACCATCACAACATGAGCTTGCAGCTGTTGTCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACATGACGTTCACCATCACAACATGAGCTTGCAGCTGTTGTCCTG  650

seq1  AACAACTGAAAGGAACTCCTTTGCCCTTTTCCGTGGAAGGATGATGTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTGAAAGGAACTCCTTTGCCCTTTTCCGTGGAAGGATGATGTCAC  700

seq1  CGCCTTTCTCTTTTGTTCCCTTAAATGACGGAACACAAACACTGTTTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTTCTCTTTTGTTCCCTTAAATGACGGAACACAAACACTGTTTGCC  750

seq1  ATATTGGTTTGCACATTAATAAGCGCAACATAAAACCAAATTGCAAGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGTTTGCACATTAATAAGCGCAACATAAAACCAAATTGCAAGGCC  800

seq1  GTGCTTCTTCCCAAGCTGTTCTCCCATGTTAATGCTTTCCTGCAGCCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCTTCCCAAGCTGTTCTCCCATGTTAATGCTTTCCTGCAGCCCTG  850

seq1  ACAGATGCTCAGACGCCAAAATATCCTCCAGAAGACGAGGCTAATGGAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGCTCAGACGCCAAAATATCCTCCAGAAGACGAGGCTAATGGAGC  900

seq1  TACTATTTATACAACGTTGGGAACCTTGAAATCACTAAATCCATTTCTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTTATACAACGTTGGGAACCTTGAAATCACTAAATCCATTTCTAT  950

seq1  GATTCCTAATAGTAAAATATGAACATTT-GGCCAAAGACAATTGTTTCCT  999
      |||||||||||||||||||||||||||| |||||||||| |||| |||||
seq2  GATTCCTAATAGTAAAATATGAACATTTGGGCCAAAGAC-ATTG-TTCCT  998

seq1  AACAGTTT-AATTGATATCTTTATAGAAAAATCGCAGGAAAGCATAAAGC  1048
       ||||||| ||||||||||||||||||||||||||| |||||||||||||
seq2  -ACAGTTTAAATTGATATCTTTATAGAAAAATCGCA-GAAAGCATAAAGC  1046

seq1  TCATA  1053
      |||||
seq2  TCATA  1051