BAC Information

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BAC

Clone NameB6Ng01-238J21
Chromosome12 (Build37)
Map Location 7,079,398 - 7,211,912
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043137, LOC238049, LOC100042118
Downstream geneLOC668380, EG668388, Apob
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238J21.bB6Ng01-238J21.g
ACCGA049263GA049264
length1,0961,187
definitionB6Ng01-238J21.b B6Ng01-238J21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,079,398 - 7,080,487)(7,210,745 - 7,211,912)
sequence
gaattcaactgtgactcatttgctgcttatgccaagctaatgagaataat
gacaagaagaaagtatctgaggtaagcactatgccaatgacacagtcctg
aggtcgcattcatctctgtgactagattagtcacatattatgaagagata
tcaactacataagcttacaaactattcattcttttttacctaaattatca
ttatttctcctttttatttactacttgggacaacattgcaagctgaaatg
tcttcaggaagaaggctcacagtggtctatgcatgtaaggtatcaaaaca
cattttaataaaatatttatattgtgatgaagaggaggagccacaggatg
actccacaagtaaagactcttagcaacaagcttgattagcaacaagttta
gccatatggatttgatctccagaaactacaaagttaaaagaggaaatgaa
ctcccacaattcaccctttcaaaatgtgtcctggcatgttaatgaccaca
tatacacatacatacacatatataaatacaaacataaaattgtgtatatt
gattaggatatgtgaatggtatataaaaatggaactcatatatttgaatt
ttgaaggaagctattttttgcaccaatatgctctgttacttaattacata
ttgaataagcatatgtataaagtgctaaaatcattgtatagagttgcata
tgagtgtgtcataaaatgtaatgaacaatttatcaacatgaaatttaaat
ttctctattaatattgatgcacacagctaaatatttttcatgatctgtat
atcaaatacataatggttgaggtcaaaatagttcttcaaattaaaactaa
aggaaatctaattcagccaggattataggcagtaaatttatatcttacag
aaaacagcatccttttaaagaagaatttaagctacactgggattcataat
ttatttaaaaaaaaccctttcggtttaagatttttcagcctaagccaatt
cattacaactgatttttatgcaaacattgtctaattttagatcttaccat
caagttgccttggagacctttttactagggaaaaaaaaaggaatat

gaattcacaaatgaagggagggaaggtttgctctgcttcagaaatgtcag
tggtttgcttgaggtaaaaggaagaatatctcagagcgggtagaattttt
ctttgtctcatgtatccaggatgcaaatatagagtatgtcacgctggttt
tcttcattttcctctgccattgtaactgggttcccagtctatggatcata
ctatctccagcacagattcttttagatggcccaacatgcttcgacacagt
aatcctcaattccctctaagccattatggtaaccagaaaaagaggagtgg
tttacagggacacatttaaaatttcagtctgggactcccacctcaaccac
aatttttaatttatagagttaaatctagctgagttcaaattccattgcaa
aagtcaccagagggactatatctctctctcgttcagcagaaaagccaagc
acagcagttcaattatgctagcactgagtcctgctctccaaagactgaaa
ggccagagggaaaggcatcaagaggagacttatatgatcctgttcactcc
ccttggctagaaatagcattgtgttagtgactagaaaattgaaatggaat
gtgatccaagatggcagccagtgccttttgttctattaacctctgggctg
gactgctcagtacagagaagggtgaccaagatgaattacttctttaatct
ttgtgaattgcctttctaatgtaagaaggtgatctgagaaaattttggtt
tatatccaaaatgtctatgatttaaaaaagtcattaggatagaggtttat
agaccagccaagcaaaccaggtatctgaaaacaaattaataaatacactc
caggatttcagaattaatgagagatgaaatggtagaagttctgtaataat
ttattggttctcaaattaatggtaataattaccacagcaaattgccatgt
aactgttcagtggaacagtttatatctaatccctacattttgtaactggg
tttctcttctatttttcatgtctacgggattaaggcttccttgccttaga
ttattctttgcttaattcctactaaccttagccccttgtttctggcataa
tgagagtaaaatggattggaagaaaaggttttatgaattggccaatccta
acattttgcacaaaaggagaatctccgtggagaatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_7079398_7080487
seq2: B6Ng01-238J21.b_48_1143

seq1  GAATTCAACTGTGACTCATTTGCTGCTTATGCCAAGCTAATGAGAATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTGTGACTCATTTGCTGCTTATGCCAAGCTAATGAGAATAAT  50

seq1  GACAAGAAGAAAGTATCTGAGGTAAGCACTATGCCAATGACACAGTCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAAGAAAGTATCTGAGGTAAGCACTATGCCAATGACACAGTCCTG  100

seq1  AGGTCGCATTCATCTCTGTGACTAGATTAGTCACATATTATGAAGAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCGCATTCATCTCTGTGACTAGATTAGTCACATATTATGAAGAGATA  150

seq1  TCAACTACATAAGCTTACAAACTATTCATTCTTTTTTACCTAAATTATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTACATAAGCTTACAAACTATTCATTCTTTTTTACCTAAATTATCA  200

seq1  TTATTTCTCCTTTTTATTTACTACTTGGGACAACATTGCAAGCTGAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTCCTTTTTATTTACTACTTGGGACAACATTGCAAGCTGAAATG  250

seq1  TCTTCAGGAAGAAGGCTCACAGTGGTCTATGCATGTAAGGTATCAAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGGAAGAAGGCTCACAGTGGTCTATGCATGTAAGGTATCAAAACA  300

seq1  CATTTTAATAAAATATTTATATTGTGATGAAGAGGAGGAGCCACAGGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAATAAAATATTTATATTGTGATGAAGAGGAGGAGCCACAGGATG  350

seq1  ACTCCACAAGTAAAGACTCTTAGCAACAAGCTTGATTAGCAACAAGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACAAGTAAAGACTCTTAGCAACAAGCTTGATTAGCAACAAGTTTA  400

seq1  GCCATATGGATTTGATCTCCAGAAACTACAAAGTTAAAAGAGGAAATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATGGATTTGATCTCCAGAAACTACAAAGTTAAAAGAGGAAATGAA  450

seq1  CTCCCACAATTCACCCTTTCAAAATGTGTCCTGGCATGTTAATGACCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACAATTCACCCTTTCAAAATGTGTCCTGGCATGTTAATGACCACA  500

seq1  TATACACATACATACACATATATAAATACAAACATAAAATTGTGTATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACATACATACACATATATAAATACAAACATAAAATTGTGTATATT  550

seq1  GATTAGGATATGTGAATGGTATATAAAAATGGAACTCATATATTTGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGGATATGTGAATGGTATATAAAAATGGAACTCATATATTTGAATT  600

seq1  TTGAAGGAAGCTATTTTTTGCACCAATATGCTCTGTTACTTAATTACATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGAAGCTATTTTTTGCACCAATATGCTCTGTTACTTAATTACATA  650

seq1  TTGAATAAGCATATGTATAAAGTGCTAAAATCATTGTATAGAGTTGCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAAGCATATGTATAAAGTGCTAAAATCATTGTATAGAGTTGCATA  700

seq1  TGAGTGTGTCATAAAATGTAATGAACAATTTATCAACATGAAATTTAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTGTCATAAAATGTAATGAACAATTTATCAACATGAAATTTAAAT  750

seq1  TTCTCTATTAATATTGATGCACACAGCTAAATATTTTTCATGATCTGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTATTAATATTGATGCACACAGCTAAATATTTTTCATGATCTGTAT  800

seq1  ATCAAATACATAATGGTTGAGGTCAAAATAGTTCTTCAAATTAAAACT-A  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATCAAATACATAATGGTTGAGGTCAAAATAGTTCTTCAAATTAAAACTAA  850

seq1  AGGAAATCTAATTCAGCCAGGATTATAGGCAGTAAATTTATATCTTACAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATCTAATTCAGCCAGGATTATAGGCAGTAAATTTATATCTTACAG  900

seq1  AAAACAGCATCCTTTTAAAGAAGAA-TTAAGCTACACTGGGATTCATAAT  948
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAAACAGCATCCTTTTAAAGAAGAATTTAAGCTACACTGGGATTCATAAT  950

seq1  TTATTTAAAAAAAAACCCTTCGGTTTAAGATTTTTCAGCCTAAAGCCAAT  998
      |||||||||||||| || ||||||||||||||||||||||| ||||||||
seq2  TTATTTAAAAAAAACCCTTTCGGTTTAAGATTTTTCAGCCT-AAGCCAAT  999

seq1  TCATTACAACTGA-TTTTATGCAAACAATTGTCTAATTTTAGATCTTACC  1047
      ||||||||||||| |||||||||||| |||||||||||||||||||||||
seq2  TCATTACAACTGATTTTTATGCAAAC-ATTGTCTAATTTTAGATCTTACC  1048

seq1  ATCAAGTTGCCTT-GAGA-CTTTTTACTAGG---AAAAAAAAGAATAT  1090
      ||||||||||||| |||| ||||||||||||   ||||||| ||||||
seq2  ATCAAGTTGCCTTGGAGACCTTTTTACTAGGGAAAAAAAAAGGAATAT  1096


seq1: chr12_7210745_7211912
seq2: B6Ng01-238J21.g_69_1255 (reverse)

seq1  CTATTCTC--AGGA-----TCCTTTTGTGCAAAATG-TAGGATTGGC--A  40
      ||||||||   |||     ||||||||||||||||| ||||||||||  |
seq2  CTATTCTCCACGGAGATTCTCCTTTTGTGCAAAATGTTAGGATTGGCCAA  50

seq1  TTCATTAAAACCTTTTCTT-CAAT-CATTTTACTCTCATTATG-CAG-AA  86
      |||| |||||||||||||| |||| |||||||||||||||||| ||| ||
seq2  TTCA-TAAAACCTTTTCTTCCAATCCATTTTACTCTCATTATGCCAGAAA  99

seq1  CAA-GGGCTTAGGTAAGTAGGGATTAAAGCAAGAATTATTCTAAAGCAA-  134
      ||| ||||| |||| |||||| ||| ||||||  | || ||||| |||| 
seq2  CAAGGGGCTAAGGTTAGTAGGAATT-AAGCAAAGAATAATCTAAGGCAAG  148

seq1  GAAG-CTTTATCCGTAAGACATG-AAAATAG-AGAGAAA-CCAGTTAC-A  179
      |||| ||| ||||   ||||||| ||||||| ||||||| |||||||| |
seq2  GAAGCCTTAATCCCGTAGACATGAAAAATAGAAGAGAAACCCAGTTACAA  198

seq1  AATGTA-GGATTAGATTATAAACTTGTTCACTGAACAGTTACATGGCAAT  228
      |||||| |||||||| ||||||||  | ||||||||||||||||||||||
seq2  AATGTAGGGATTAGA-TATAAACTGTTCCACTGAACAGTTACATGGCAAT  247

seq1  TTGCTGTGGTAATTATTACCATTAATTTGAGAACCAAT-AATTATTACAG  277
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTGCTGTGGTAATTATTACCATTAATTTGAGAACCAATAAATTATTACAG  297

seq1  AACTTCTACCATTTCATCTCTCATTTATTCTGAAATCCTGGAGTGTATTT  327
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AACTTCTACCATTTCATCTCTCATTAATTCTGAAATCCTGGAGTGTATTT  347

seq1  ATTAATTTGTTTTTCAGATACCTGGTTTGCTTGGCTGGTCTATAAACCTC  377
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTG-TTTTCAGATACCTGGTTTGCTTGGCTGGTCTATAAACCTC  396

seq1  TATCCTAATGACTTTTTTAAATCATAGACATTTTGGATATAAACCAAAAT  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTAATGACTTTTTTAAATCATAGACATTTTGGATATAAACCAAAAT  446

seq1  TTTCTCAGATCACCTTCTTACATTAGAAAGGCAATTCACAAAGATTAAAG  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGATCACCTTCTTACATTAGAAAGGCAATTCACAAAGATTAAAG  496

seq1  AAGTAATTCATCTTGGTCACCCTTCTCTGTACTGAGCAGTCCAGCCCAGA  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATTCATCTTGGTCACCCTTCTCTGTACTGAGCAGTCCAGCCCAGA  546

seq1  GGTTAATAGAACAAAAGGCACTGGCTGCCATCTTGGATCACATTCCATTT  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAATAGAACAAAAGGCACTGGCTGCCATCTTGGATCACATTCCATTT  596

seq1  CAATTTTCTAGTCACTAACACAATGCTATTTCTAGCCAAGGGGAGTGAAC  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTCTAGTCACTAACACAATGCTATTTCTAGCCAAGGGGAGTGAAC  646

seq1  AGGATCATATAAGTCTCCTCTTGATGCCTTTCCCTCTGGCCTTTCAGTCT  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCATATAAGTCTCCTCTTGATGCCTTTCCCTCTGGCCTTTCAGTCT  696

seq1  TTGGAGAGCAGGACTCAGTGCTAGCATAATTGAACTGCTGTGCTTGGCTT  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAGCAGGACTCAGTGCTAGCATAATTGAACTGCTGTGCTTGGCTT  746

seq1  TTCTGCTGAACGAGAGAGAGATATAGTCCCTCTGGTGACTTTTGCAATGG  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTGAACGAGAGAGAGATATAGTCCCTCTGGTGACTTTTGCAATGG  796

seq1  AATTTGAACTCAGCTAGATTTAACTCTATAAATTAAAAATTGTGGTTGAG  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAACTCAGCTAGATTTAACTCTATAAATTAAAAATTGTGGTTGAG  846

seq1  GTGGGAGTCCCAGACTGAAATTTTAAATGTGTCCCTGTAAACCACTCCTC  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGTCCCAGACTGAAATTTTAAATGTGTCCCTGTAAACCACTCCTC  896

seq1  TTTTTCTGGTTACCATAATGGCTTAGAGGGAATTGAGGATTACTGTGTCG  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGGTTACCATAATGGCTTAGAGGGAATTGAGGATTACTGTGTCG  946

seq1  AAGCATGTTGGGCCATCTAAAAGAATCTGTGCTGGAGATAGTATGATCCA  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGTTGGGCCATCTAAAAGAATCTGTGCTGGAGATAGTATGATCCA  996

seq1  TAGACTGGGAACCCAGTTACAATGGCAGAGGAAAATGAAGAAAACCAGCG  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGGGAACCCAGTTACAATGGCAGAGGAAAATGAAGAAAACCAGCG  1046

seq1  TGACATACTCTATATTTGCATCCTGGATACATGAGACAAAGAAAAATTCT  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATACTCTATATTTGCATCCTGGATACATGAGACAAAGAAAAATTCT  1096

seq1  ACCCGCTCTGAGATATTCTTCCTTTTACCTCAAGCAAACCACTGACATTT  1127
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGCTCTGAGATATTCTTCCTTTTACCTCAAGCAAACCACTGACATTT  1146

seq1  CTGAAGCAGAGCAAACCTTCCCTCCCTTCATTTGTGAATTC  1168
      |||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCAGAGCAAACCTTCCCTCCCTTCATTTGTGAATTC  1187


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