BAC Information

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BAC

Clone NameB6Ng01-238P09
Chromosome12 (Build37)
Map Location 49,575,873 - 49,576,969
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664891
Downstream geneGm1818, GA_x5J8B7W54VK-284379-285078, Olfr1399-ps1, EG665036, LOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238P09.bB6Ng01-238P09.g
ACCGA049516GA049517
length8581,114
definitionB6Ng01-238P09.b B6Ng01-238P09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccatctgaggaatactgaatggctgagaagcacctgaaaaaaat
gttcaggatccttaatcattagggaaatgcatatcaaaacaaccctgaaa
ttccacctcacaccagtcacaatggctaagatcaaaaattcaggagacag
cagattctggagaggatgcagagaaaagggaacactcctccattgttggt
aggatggcaagcttgtacaaccactctggaaatcagtctggcggttcctc
agaaaactggacatagtactactggatgatcccaagatacaaaatacaat
tttcaaaacacatgaaactcaagaatgaagaccaaagtgtggacattttg
ccccttcttagaattgggaacaaaacacccatggaagaagttacagagac
aaagtttggagctgagatgaaaggatggaccatctaaagcctgccatacc
cggggatccatcccataatcagcctccaaactctgataccattgcataca
ctagcaagattttgctgaaaggaccctgatatacctgtctcttgtgaggc
tatgctgtggcctagcaaacacagaagtggatgctcacagtcagctattg
gatagatcacagggtgtccaatggaggtgctagagaaagtacctaaggag
ctaaacagatctgcaaccctataggtggaacaacaatatatactaaccag
tagcccccagagcttttgtctctagctgcatatttaccagaagttggctt
agttggccatcattggaaagagaggcccattggtcttgcaaactttatat
gcctcagtacagggaaaagccagcgccatgaagtgggagcgggtgggtag
ggggagtg

gaattcagcatttgaaagcaagtattattttgaagaatgggagaaatact
tgactatctgagttagaagggttgccaaaatgttttggaaacctagttga
tgctggagcacaaatttatagtgacatctggatttaactgcacaggtgca
aaggaagacagataattagattcgacctgatctaggattttgccaaacat
gtgctgaaaggacacagcgacaaaacactatacacatttagcagatcttg
gtgaaaataaagcacttattatccttctgaaatgactgggagataggtgg
cagtataatgatgcatgcttttttgttaaaatttactaattctgtatgct
tgattaataaatgtgtagcttatatgagaagcaagtcagggaatcacatt
ttagtacttaggggatttgaagtagctaaaagcagttgtaaatttatata
aattctttttataatatagatcagaattgttggtttccacatgatgttac
tcactcttacctggaaaggggatttccttggggcatatgtggtgcataaa
cacagtgccttcccacactgagttacatagctgcattcagtcttggaagt
catctttgtgaatagctcattatccatttgaaacttcttctgaataattt
cttatgcaacatgcaccgctcttgcctttatcccaagcaagccaatattc
atcatccagaaaaccatgtggcttttccaaactgggtcataatctaagct
tttcaaggacctgctactacatactaagtttattgaaaaactttatttcc
accttgctgggtagaaaatattcatttaatggttattacctcaagctcaa
aaactgaattttctccaaaggcatcaggaatccaattcactcatagcact
cttctaattgcttgtgttttcctcttttgtcacttaggaaatattatttt
actttttatgatttagaataagaacctcctgagactgctctaacaatttc
ccacattttctaatttttctctacatccaattcttatggaataactttag
tttattagtcttattacttccaataaatattaggatttccctgttaattc
ctttattaaatgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_49575873_49576969
seq2: B6Ng01-238P09.g_71_1184 (reverse)

seq1  CTCATT--ATAAAGGAATTAACAAGGAAATCAT-ATATTTATTGG-AGTA  46
      ||||||  ||||||||||||||| ||||||| | ||||||||||| ||||
seq2  CTCATTTAATAAAGGAATTAACAGGGAAATCCTAATATTTATTGGAAGTA  50

seq1  ATAGAACTTATAAACTAAGTTTATTCCATAAGAATT-GATGTAGAG-AAA  94
      |||  ||| |||||||||  |||||||||||||||| ||||||||| |||
seq2  ATAAGACTAATAAACTAAAGTTATTCCATAAGAATTGGATGTAGAGAAAA  100

seq1  ATTAG-AAATGTGGG-AATTGTTAGAGCAGTCTCAG--AGTTC-TATTCT  139
      ||||| ||||||||| ||||||||||||||||||||   |||| ||||||
seq2  ATTAGAAAATGTGGGAAATTGTTAGAGCAGTCTCAGGAGGTTCTTATTCT  150

seq1  -AATCAT-AAAAGTAAAAT-ATATTTCCTAAGTGAC-AAAGAG--AAACA  183
       |||||| ||||||||||| |||||||||||||||| ||||||  |||||
seq2  AAATCATAAAAAGTAAAATAATATTTCCTAAGTGACAAAAGAGGAAAACA  200

seq1  CAAGCAATTAG-AGAGTGCTATTGAGTGAATTGGATTCCTGATGCCTTTG  232
      ||||||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  CAAGCAATTAGAAGAGTGCTA-TGAGTGAATTGGATTCCTGATGCCTTTG  249

seq1  GAG-AAATTCAGTTTTTGAGCTTTGAGGTAATAACCATTAAATG-ATATT  280
      ||| ||||||||||||||||| |||||||||||||||||||||| |||||
seq2  GAGAAAATTCAGTTTTTGAGC-TTGAGGTAATAACCATTAAATGAATATT  298

seq1  TTCTACCCAGCAAGGTGGAAATAAAGTTTTTTCAATAAACTTAGTATGTA  330
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTCTACCCAGCAAGGTGGAAATAAAG-TTTTTCAATAAACTTAGTATGTA  347

seq1  GTAGCAGGTCCTTGAAAAGCTTAGATTATGACCCAGTTTGGAAAAGCCAC  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGGTCCTTGAAAAGCTTAGATTATGACCCAGTTTGGAAAAGCCAC  397

seq1  ATGGTTTTCTGGATGATGAATATTGGCTTGCTTGGGATAAAGGCAAGAGC  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTTCTGGATGATGAATATTGGCTTGCTTGGGATAAAGGCAAGAGC  447

seq1  GGTGCATGTTGCATAAGAAATTATTCAGAAGAAGTTTCAAATGGATAATG  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCATGTTGCATAAGAAATTATTCAGAAGAAGTTTCAAATGGATAATG  497

seq1  AGCTATTCACAAAGATGACTTCCAAGACTGAATGCAGCTATGTAACTCAG  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTCACAAAGATGACTTCCAAGACTGAATGCAGCTATGTAACTCAG  547

seq1  TGTGGGAAGGCACTGTGTTTATGCACCACATATGCCCCAAGGAAATCCCC  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAAGGCACTGTGTTTATGCACCACATATGCCCCAAGGAAATCCCC  597

seq1  TTTCCAGGTAAGAGTGAGTAACATCATGTGGAAACCAACAATTCTGATCT  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGTAAGAGTGAGTAACATCATGTGGAAACCAACAATTCTGATCT  647

seq1  ATATTATAAAAAGAATTTATATAAATTTACAACTGCTTTTAGCTACTTCA  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATAAAAAGAATTTATATAAATTTACAACTGCTTTTAGCTACTTCA  697

seq1  AATCCCCTAAGTACTAAAATGTGATTCCCTGACTTGCTTCTCATATAAGC  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCTAAGTACTAAAATGTGATTCCCTGACTTGCTTCTCATATAAGC  747

seq1  TACACATTTATTAATCAAGCATACAGAATTAGTAAATTTTAACAAAAAAG  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATTTATTAATCAAGCATACAGAATTAGTAAATTTTAACAAAAAAG  797

seq1  CATGCATCATTATACTGCCACCTATCTCCCAGTCATTTCAGAAGGATAAT  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATCATTATACTGCCACCTATCTCCCAGTCATTTCAGAAGGATAAT  847

seq1  AAGTGCTTTATTTTCACCAAGATCTGCTAAATGTGTATAGTGTTTTGTCG  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTTTATTTTCACCAAGATCTGCTAAATGTGTATAGTGTTTTGTCG  897

seq1  CTGTGTCCTTTCAGCACATGTTTGGCAAAATCCTAGATCAGGTCGAATCT  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCCTTTCAGCACATGTTTGGCAAAATCCTAGATCAGGTCGAATCT  947

seq1  AATTATCTGTCTTCCTTTGCACCTGTGCAGTTAAATCCAGATGTCACTAT  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCTGTCTTCCTTTGCACCTGTGCAGTTAAATCCAGATGTCACTAT  997

seq1  AAATTTGTGCTCCAGCATCAACTAGGTTTCCAAAACATTTTGGCAACCCT  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGTGCTCCAGCATCAACTAGGTTTCCAAAACATTTTGGCAACCCT  1047

seq1  TCTAACTCAGATAGTCAAGTATTTCTCCCATTCTTCAAAATAATACTTGC  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTCAGATAGTCAAGTATTTCTCCCATTCTTCAAAATAATACTTGC  1097

seq1  TTTCAAATGCTGAATTC  1097
      |||||||||||||||||
seq2  TTTCAAATGCTGAATTC  1114


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