BAC Information

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BAC

Clone NameB6Ng01-239H03
Chromosome12 (Build37)11 (Build37)
Map Location 94,228,211 - 94,229,30746,475,348 - 46,475,554
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039387, LOC100039425, LOC628116
Downstream gene2610022K04Rik-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239H03.bB6Ng01-239H03.g
ACCGA049868GA049869
length1,0911,003
definitionB6Ng01-239H03.b B6Ng01-239H03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(94,228,211 - 94,229,307)(46,475,348 - 46,475,554)
sequence
gaattctttgtttacctctgtaccccattttgtaatagggttatttgttt
ctctggcgtctaacttcttgagttctatgtgtatattggacattagccct
ctatcagatgtaagattgataaagatcttttccacctgcctctgcctccc
aagggctgggattaaaggcatgtgccaccaccgcccggctttaacagtgt
tctttgccttacagaagctttacaattttgaggtgcaaagtaagaataat
actgaaaaagtaatctgtcattacaatgttgtctcatgatataatatacc
atctaaaattcagatttcatttcatttgtgcatgataaagctaccagggg
tttatgtagtttatgtaggcagaaagccacagggtttcccagtaattaga
caattacagtgtgagcatccataaggtcatgaaatattctatggtcagaa
acagattaggatagacctataaaatatagaaaaatctgtatactcatttt
ttgcaatatttttaattttatgactataccttgtatttcacatttaatgt
aatcctaaccatgaaacaatttgaagcaatctttctacatgggtgtaaaa
gtcaaacataaggacagaaaatttaaaatgccaagacagattcctgtgtt
atttgtgtaggttttaatgaggtaacattgggaaaaattatttaaccttt
ctcaagttaaaagatttcattcttcaaaataactcacacatttgtagtat
gatgaatgctaatatgtagtttatattgaagacaggagctcataattatt
cagatgggcaatggcagagtctaaatcctgatgaaatcgctcataggctg
tgagtaaatattgaagcatcttctatggtgaaggcagaaatgaaaggaga
ctctccaatatgatgtaatgtgctttgttaacatatctcgaaagccatat
gtaaatccacaaacacattcaaatacatgaaaatcatcattaaaaattat
ttgggttttatgtatagatcattgtatagtaatgtcttgtatgatatttt
agtctaaatttatgttaatatatatagcctctttgaaaagg

gaattcaagaaataggacaacaacaaaccaaataacccaattagtaaatg
ggggtatagaactaaacagagaatgcttaacagaggaatctcaaatgtct
gaggggcatttaaaaagatgtccaaagtccttagtcattaatgaaatgca
aaacaaataactatggggttccatctaacacccatcagaatgacaaagat
caaaaactcaagagattgcactgctggcaagattatggagcaagtagaac
actcctctattgctggtagaaatacaaacctgtacaattactttggaaat
caatctggaagtttctcagaaaactgggaataattctccctccagaccct
ggtataccactccagaccatatactcagaagatactccaacatctggtaa
agacacttgatcaattatgttcatagcagctttatttgtaatagccagaa
acaggatacaacaactggatatccctcaactgaagaatagatgttcagga
tcaggtggggtgaaggacaggagagatgactagatgaccatgcaaatgga
tggaaatctgtaactgacgggggcgagggggtgggagtcatctccacgac
aagacagagaactgggataagggaggtgttggaatcagggcctccaaaac
ctgtggtatcacataggcaggacctacagacctgttgccaagacaatggc
caccatattcccagaattcacttgactcacctcccacctttacctgtcat
tatccacataaataaggggaacatccctccctctctctctcttcccctct
gctctttctgcttctactttccttgcccccctttctcccaataaagctct
tatacatggaactcttttggactagtgtgctgtattcagatatgagctat
tctaacatatcaggaggagcccaaaaatcaatgcgggtgacctcagttct
gactcactacaatgaggatatgggaacctgaagaggtcactcctgtacca
ggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_94228211_94229307
seq2: B6Ng01-239H03.b_44_1134

seq1  GAATTCTTTGTTTACCTCTGTACCCCATTTTGTAATAGGGTTATTTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTACCTCTGTACCCCATTTTGTAATAGGGTTATTTGTTT  50

seq1  CTCTGGCGTCTAACTTCTTGAGTTCTATGTGTATATTGGACATTAGCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCGTCTAACTTCTTGAGTTCTATGTGTATATTGGACATTAGCCCT  100

seq1  CTATCAGATGTAAGATTGATAAAGATCTTTTCCACCTGCCTCTGCCTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGATGTAAGATTGATAAAGATCTTTTCCACCTGCCTCTGCCTCCC  150

seq1  AAGGGCTGGGATTAAAGGCATGTGCCACCACCGCCCGGCTTTAACAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTGGGATTAAAGGCATGTGCCACCACCGCCCGGCTTTAACAGTGT  200

seq1  TCTTTGCCTTACAGAAGCTTTACAATTTTGAGGTGCAAAGTAAGAATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCCTTACAGAAGCTTTACAATTTTGAGGTGCAAAGTAAGAATAAT  250

seq1  ACTGAAAAAGTAATCTGTCATTACAATGTTGTCTCATGATATAATATACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAAAGTAATCTGTCATTACAATGTTGTCTCATGATATAATATACC  300

seq1  ATCTAAAATTCAGATTTCATTTCATTTGTGCATGATAAAGCTACCAGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAATTCAGATTTCATTTCATTTGTGCATGATAAAGCTACCAGGGG  350

seq1  TTTATGTAGTTTATGTAGGCAGAAAGCCACAGGGTTTCCCAGTAATTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTAGTTTATGTAGGCAGAAAGCCACAGGGTTTCCCAGTAATTAGA  400

seq1  CAATTACAGTGTGAGCATCCATAAGGTCATGAAATATTCTATGGTCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTACAGTGTGAGCATCCATAAGGTCATGAAATATTCTATGGTCAGAA  450

seq1  ACAGATTAGGATAGACCTATAAAATATAGAAAAATCTGTATACTCATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTAGGATAGACCTATAAAATATAGAAAAATCTGTATACTCATTTT  500

seq1  TTGCAATATTTTTAATTTTATGACTATACCTTGTATTTCACATTTAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATATTTTTAATTTTATGACTATACCTTGTATTTCACATTTAATGT  550

seq1  AATCCTAACCATGAAACAATTTGAAGCAATCTTTCTACATGGGTGTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTAACCATGAAACAATTTGAAGCAATCTTTCTACATGGGTGTAAAA  600

seq1  GTCAAACATAAGGACAGAAAATTTAAAATGCCAAGACAGATTCCTGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAACATAAGGACAGAAAATTTAAAATGCCAAGACAGATTCCTGTGTT  650

seq1  ATTTGTGTAGGTTTTAATGAGGTAACATTGGGAAAAATTATTTAACCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTAGGTTTTAATGAGGTAACATTGGGAAAAATTATTTAACCTTT  700

seq1  CTCAAGTTAAAAGATTTCATTCTTCAAAATAACTCACACATTTGTAGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTTAAAAGATTTCATTCTTCAAAATAACTCACACATTTGTAGTAT  750

seq1  GATGAATGCTAATATGTAGTTTATATTGAAGACAGGAGCTCATAATTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATGCTAATATGTAGTTTATATTGAAGACAGGAGCTCATAATTATT  800

seq1  CAGATGGGCAATGGCAGAGTCTAAATCCTGATGAAATCGCTCATAGGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGGCAATGGCAGAGTCTAAATCCTGATGAAATCGCTCATAGGCTG  850

seq1  TGAGTAAATATTGAAGCATCTTCTATGGTGAAGGCAGAAATGAAAGGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAAATATTGAAGCATCTTCTATGGTGAAGGCAGAAATGAAAGGAGA  900

seq1  CTCTCCAATATGATGTAATGTGCTTTGTTAACATATCTCGAAAGCCATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAATATGATGTAATGTGCTTTGTTAACATATCTCGAAAGCCATAT  950

seq1  GTAAATCCACAAACACATTCAAATACATGAAAATCATCATTAAAAATTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATCCACAAACACATTCAAATACATGAAAATCATCATTAAAAATTAT  1000

seq1  TT-GGTTTTATGTATAGATCATTGTATAGTTAATGTCTTTGTTATGATTA  1049
      || |||||||||||||||||||||||||| |||||||||   ||||||  
seq2  TTGGGTTTTATGTATAGATCATTGTATAG-TAATGTCTT--GTATGAT--  1045

seq1  TTTTTAGGTTCTAAATTTTATG-TAATATATATAGCCTCTTTGAAAAGG  1097
       ||||||  |||||| |||||| ||||||||||||||||||||||||||
seq2  ATTTTAG--TCTAAA-TTTATGTTAATATATATAGCCTCTTTGAAAAGG  1091


seq1: chr11_46475348_46475554
seq2: B6Ng01-239H03.g_722_909

seq1  ATCACATAGGTGACAGTATGACCTGCAGACCTGTTGCCAAGACAACAGGC  50
      ||||||||||   |||   ||||| ||||||||||||||||||||  | |
seq2  ATCACATAGG---CAG---GACCTACAGACCTGTTGCCAAGACAATGGCC  44

seq1  ACCATATTTCCAGAATCCACTTGGCTCACCTCCCACCTTTACCTGTGTTA  100
      |||||||| ||||||| |||||| ||||||||||||||||||||      
seq2  ACCATATTCCCAGAATTCACTTGACTCACCTCCCACCTTTACCT------  88

seq1  AGTCATTTTCCATATAAATAAGGGGAACACCCCTCCCTCTCTCTCTGTTT  150
       |||||| |||| |||||||||||||||| |||||||||||||||| || 
seq2  -GTCATTATCCACATAAATAAGGGGAACATCCCTCCCTCTCTCTCTCTTC  137

seq1  CCC-CTTCTCTTTCTGCCACCACCATCCTCTCTCTTTCCATCTCTCTCTC  199
      ||| || |||||||||       | ||  || || || |  | || ||||
seq2  CCCTCTGCTCTTTCTG-------CTTCTACTTTCCTTGCCCCCCTTTCTC  180

seq1  CCAATAAA  207
      ||||||||
seq2  CCAATAAA  188


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