BAC Information

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BAC

Clone NameB6Ng01-239I04
Chromosome12 (Build37)
Map Location 35,794,131 - 35,795,276
singlet/doubletsinglet
Overlap geneSnx13
Upstream geneHdac9, 4921508M14Rik, Prps1l1
Downstream geneAhr, LOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239I04.bB6Ng01-239I04.g
ACCGA049916GA049917
length8951,144
definitionB6Ng01-239I04.b B6Ng01-239I04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaatatgggtaaaataactcaggcaattccagcatacaagtccca
gctctgtgcttttctgagcaggacgggagcacatgactgtgccattccat
catcatgcccacctgtaacttctgttcatcactgagaatgtgtggtcaat
gtgtgatgatgctccaaactttgtctctgtaactccttccaaaggcgttt
tgttcccaattctaagaaggggcaaagtgtccacactttggtcttcgttc
ttcttgagtttcatgtgtttagcaaattgtatcttatgtcttgggtattc
taaatttctgggctaatatccacttatcaatgagtacatatcatttgagt
tcttttgtgattgggttacctcactcaggatgatgccctccaggtccatc
catttgcctaggaatttcataaattcattctttttaatagctgagtagta
caaagtttggagctgagacgaaaggatggaccatctagagactgccatac
ctgagtatccatcccataatcagcctccaaacgctgacaccattgcctac
actagcaagattttgctgaaaggaccctgatatagctgtctcttgtgagg
ctatgcaaacacagaagtggaggctcacagtcagctattggatgggtcac
agggcccccaatggaggagctagagaaagtacccaaggagctaaagggat
ctgcaaccctataggtggaacaacaatatgaactaaccattacccaccag
agctcgtgtctctatctgcatatgtatcagaagatagcctagtcggcaat
cagtggaaagagaggtccattggtcttgcaaactttatatgcctcagtac
agggaaatgccagggccacgaagtgggagtgggtgggtagggaat

gaattctctgtttataaaccaaagatgaaatacctagatgaaattttctg
tacgtttttttgtggtcagaggcttggggagctaagcagtgttccttgtt
atttagaataacatgttctctagaacagaaggctgtaacagctactcttt
cagaattgtaagtgattcagtctttttgaagattcatttaagaatgataa
atttataaatgcgttaagatctggaaaaggtacattaactttaaactata
tatgaatagtgttttagcatagctttttcttgtgtttttaaactaaattg
aaagtttaatttgcttatatatatataataaagcaagggggaaagaagag
cagattactgcatgttaataatctttctttgattgctttgctaatgttta
tttttattctaacagttaaattctcttccaaggcttaaaatagtttgttt
gtttgtttgttttgtttttgtttttaaagtcaccttacaaagcagtgagt
ctcgtggcaccttgtacttgttttcctccccttctatcactgactctgtc
tctgtctctttgcaaacacccatcttcaggtccagcttctttcctaacat
tcattaaaccaaaccaaacaaaacaaaacttttctcatcattattgctta
attaaatgacatttcatacaaataattttagcatctagacttcagtgttt
ttatgtcaaatccctgaggaaacaatggactattaaatactttaaaaacc
agtgtatttgtatctcacgttgaagactgatactatttatatcatttctt
agtctctgcagtacctaatgggcttcacctctgagttcttgccatgtgtt
tgcattgcattaaacaatatcatgtggtacaggagaagaagtgtaaaaat
gattactaatttgttacctagtacgtgaatgtgactttgtttgtttgcac
atgtcaagtgcatgcatgtttttattcatatgcctaattggcttggagat
ttaagagtagatacttaataagtggaaaaagagtttctttgttgctctgg
ttgtattatgaccagtgttactgacgtttaactttacattaaaacacagc
tttaaacatatttggtgagatttggttttgcttcttatactaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_35794131_35795276
seq2: B6Ng01-239I04.g_64_1207

seq1  GAATTCTCTGTTTATAAACCAAAGATGAAATACCTAGATGAAATTTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTTATAAACCAAAGATGAAATACCTAGATGAAATTTTCTG  50

seq1  TACGTTTTTTTGTGGTCAGAGGCTTGGGGAGCTAAGCAGTGTTCCTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTTTTTTTGTGGTCAGAGGCTTGGGGAGCTAAGCAGTGTTCCTTGTT  100

seq1  ATTTAGAATAACATGTTCTCTAGAACAGAAGGCTGTAACAGCTACTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAATAACATGTTCTCTAGAACAGAAGGCTGTAACAGCTACTCTTT  150

seq1  CAGAATTGTAAGTGATTCAGTCTTTTTGAAGATTCATTTAAGAATGATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTGTAAGTGATTCAGTCTTTTTGAAGATTCATTTAAGAATGATAA  200

seq1  ATTTATAAATGCGTTAAGATCTGGAAAAGGTACATTAACTTTAAACTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAAATGCGTTAAGATCTGGAAAAGGTACATTAACTTTAAACTATA  250

seq1  TATGAATAGTGTTTTAGCATAGCTTTTTCTTGTGTTTTTAAACTAAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATAGTGTTTTAGCATAGCTTTTTCTTGTGTTTTTAAACTAAATTG  300

seq1  AAAGTTTAATTTGCTTATATATATATAATAAAGCAAGGGGGAAAGAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTAATTTGCTTATATATATATAATAAAGCAAGGGGGAAAGAAGAG  350

seq1  CAGATTACTGCATGTTAATAATCTTTCTTTGATTGCTTTGCTAATGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTACTGCATGTTAATAATCTTTCTTTGATTGCTTTGCTAATGTTTA  400

seq1  TTTTTATTCTAACAGTTAAATTCTCTTCCAAGGCTTAAAATAGTTTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTCTAACAGTTAAATTCTCTTCCAAGGCTTAAAATAGTTTGTTT  450

seq1  GTTTGTTTGTTTTGTTTTTGTTTTTAAAGTCACCTTACAAAGCAGTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTTTGTTTTTGTTTTTAAAGTCACCTTACAAAGCAGTGAGT  500

seq1  CTCGTGGCACCTTGTACTTGTTTTCCTCCCCTTCTATCACTGACTCTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTGGCACCTTGTACTTGTTTTCCTCCCCTTCTATCACTGACTCTGTC  550

seq1  TCTGTCTCTTTGCAAACACCCATCTTCAGGTCCAGCTTCTTTCCTAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTTTGCAAACACCCATCTTCAGGTCCAGCTTCTTTCCTAACAT  600

seq1  TCATTAAACCAAACCAAACAAAACAAAACTTTTCTCATCATTATTGCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAAACCAAACCAAACAAAACAAAACTTTTCTCATCATTATTGCTTA  650

seq1  ATTAAATGACATTTCATACAAATAATTTTAGCATCTAGACTTCAGTGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGACATTTCATACAAATAATTTTAGCATCTAGACTTCAGTGTTT  700

seq1  TTATGTCAAATCCCTGAGGAAACAATGGACTATTAAATACTTTAAAAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCAAATCCCTGAGGAAACAATGGACTATTAAATACTTTAAAAACC  750

seq1  AGTGTATTTGTATCTCACGTTGAAGACTGATACTATTTATATCATTTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATTTGTATCTCACGTTGAAGACTGATACTATTTATATCATTTCTT  800

seq1  AGTCTCTGCAGTACCTAATGGGCTTCACCTCTGAGTTCTTGCCATGTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTGCAGTACCTAATGGGCTTCACCTCTGAGTTCTTGCCATGTGTT  850

seq1  TGCATTGCATTAAACAATATCATGTGGTACAGGAGAAGAAGTGTAAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGCATTAAACAATATCATGTGGTACAGGAGAAGAAGTGTAAAAAT  900

seq1  GATTACTAA-TTGTTACCTAGTACGTGAATGTGACTTTGTTTGTTTGCAC  949
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTAATTTGTTACCTAGTACGTGAATGTGACTTTGTTTGTTTGCAC  950

seq1  ATGTCAGGTGCATGCATGTTTTTATTCATATGCCTAATTGGCTTGGAGAT  999
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAAGTGCATGCATGTTTTTATTCATATGCCTAATTGGCTTGGAGAT  1000

seq1  TTAAGAGGTTAGATACTT-ATAAGTGG-AAAAGAGTTTTCTTTTGTTGCT  1047
      |||||||  ||||||||| |||||||| ||||||||||   |||||||||
seq2  TTAAGAG--TAGATACTTAATAAGTGGAAAAAGAGTTT--CTTTGTTGCT  1046

seq1  CTGGTTGTA-TATGACCAGTGTTACTGACGTTTAAACTTTACATTAAACA  1096
      ||||||||| ||||||||||||||||||||||| ||||||||||||||  
seq2  CTGGTTGTATTATGACCAGTGTTACTGACGTTT-AACTTTACATTAAAAC  1095

seq1  ACAGCTTTATACATATTT-GTGAGATTTTGTTTTTGCTTCTATATATTAA  1145
      ||||||||| |||||||| |||||| |||| |||||||||| |||| |||
seq2  ACAGCTTTAAACATATTTGGTGAGA-TTTGGTTTTGCTTCT-TATACTAA  1143

seq1  G  1146
      |
seq2  G  1144


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