BAC Information

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BAC

Clone NameB6Ng01-239M11
Chromosome12 (Build37)
Map Location 98,698,871 - 98,800,657
singlet/doubletdoublet
Overlap genenone
Upstream geneEG628277
Downstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746, Galc, Gpr65, Kcnk10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239M11.bB6Ng01-239M11.g
ACCGA050115GA050116
length1,0151,095
definitionB6Ng01-239M11.b B6Ng01-239M11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,800,126 - 98,800,657)(98,698,871 - 98,699,970)
sequence
gaattccatctttcatgcttttgcaggacacaggcccatcctttgtgtca
agccttagttaaaccaagattaggaaagagcctaggtctcaaacgtttcc
ttcatgccagttcagttaggaaataggttagttcctgtttaacgctggca
gttctgccttctaaacaaacagcagaaagatgaattgctagggtcctgct
taagagagtttgtatgatcttcagctccagacagccggccaccttcctgg
tgagagcacgggggtctgcccggcctgagaggtttgtggcacaggcgccg
gcgggagccttcttggctacgggactccgcggagggcaggctgcacgggt
gaccgtgtggaatacagagtgccagccgtttctgagacgggcgagagtca
cagagcttctgggcggcgccatcttcagctccagacaaccagccaccttc
ccggcaagagccacagagcttctgaggcagcgccatcctcagctccagac
ggccggcctccttccggacaagagccacagagcttctcaggtggcgacat
cttcgactccagacaactggccaccttcctggccaaagcaacacagcttc
tgggaaagatcctgttttgggccttcaccttcagccaggaggaggtccaa
acaccagataactgtacaccttccctgaaagaggagagcttgcctacaga
gactgctctgaccactgaaactcagagaagagagcttgtctcccacgcct
gctgatagagggtaacaaaatcaacagaggaacaatctcttaacaaagac
aactataacaactaactccagagattgccagatggcaaaaggtaaacgta
agaatcctactaacagaagccaggaccactcaccatcatcagaacccaga
acgcccacttcgcccaatccaggacaccctaacacacctgaaaaggtaga
cctggatttaaagcatatctcatgatgatggtagaggacataaggaggaa
tttcaataactcact

gaattcaacaatttaagcaaaattagaaatatattttaattagcatataa
aaccatgaaaaattgcataatgcttctatcttgtgcagatcattcagcac
tacttactttagagtacaagtcttataatagataccatgagaattatact
ttataatttgaatttattttctaattaaaaccaatcaaaaattaatattc
actaactaaaagcactagagctaattattgaaattagatagcattgtttc
taataaatgtgaaaatgattaaacaacggtttgatttcaagtgattataa
gtgatggctgaaaaagctggctaattttaatgttatagaacatcctgaat
aatttaataacattatgccatctcagtacaattttctgccatatttcaca
aatatccctgggtgaaagtacaagcttactgtacacatatagtcttcaat
ggaaataatctgcttctctcatctgtggttaaatatggccatgtgttgtc
atctacacacctttctcatcttttggggcttttcaatgaaacaagagttt
atttgctcacttaaagttgaaggcattgtggattcatacaattgtttctt
aaattcgttggaaaatatatagaaatataggccagccaaacatggtagca
gatgacagaaaacacttcagcaataaagtcagatagatgtaggagttcaa
aaccatccttggctagatactaagttcaaggccaacctggcccaccagtc
cctgtctcaaaccctcatgcatgcaagaatgaaactaagtccatgtgcta
ctttaattttattttactaaggacaaaaacatggtgatgtgtcttcaagc
aaagctacttgcatggaacagtgaacaacctgcagtacatcatgcctacg
tcacacttaataattgaattattctactacttagtcactagtaaactgta
gaaaatttgaatgttagtgatgtgtagtcacctttagattaaatgctgat
aatatgactgtgagagaaatactggagttgtgtatttcttttcacctcag
atcattgtttgtagctttatttagaagatgaatattgacttttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_98800126_98800657
seq2: B6Ng01-239M11.b_44_575 (reverse)

seq1  CTCTGTGGCTCTTGTCCGGAAGGAGGCCGGCCGTCTGGAGCTGAGGATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGGCTCTTGTCCGGAAGGAGGCCGGCCGTCTGGAGCTGAGGATGG  50

seq1  CGCTGCCTCAGAAGCTCTGTGGCTCTTGCCGGGAAGGTGGCTGGTTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCCTCAGAAGCTCTGTGGCTCTTGCCGGGAAGGTGGCTGGTTGTCT  100

seq1  GGAGCTGAAGATGGCGCCGCCCAGAAGCTCTGTGACTCTCGCCCGTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGAAGATGGCGCCGCCCAGAAGCTCTGTGACTCTCGCCCGTCTCA  150

seq1  GAAACGGCTGGCACTCTGTATTCCACACGGTCACCCGTGCAGCCTGCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACGGCTGGCACTCTGTATTCCACACGGTCACCCGTGCAGCCTGCCCT  200

seq1  CCGCGGAGTCCCGTAGCCAAGAAGGCTCCCGCCGGCGCCTGTGCCACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGGAGTCCCGTAGCCAAGAAGGCTCCCGCCGGCGCCTGTGCCACAAA  250

seq1  CCTCTCAGGCCGGGCAGACCCCCGTGCTCTCACCAGGAAGGTGGCCGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAGGCCGGGCAGACCCCCGTGCTCTCACCAGGAAGGTGGCCGGCT  300

seq1  GTCTGGAGCTGAAGATCATACAAACTCTCTTAAGCAGGACCCTAGCAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAGCTGAAGATCATACAAACTCTCTTAAGCAGGACCCTAGCAATT  350

seq1  CATCTTTCTGCTGTTTGTTTAGAAGGCAGAACTGCCAGCGTTAAACAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTCTGCTGTTTGTTTAGAAGGCAGAACTGCCAGCGTTAAACAGGA  400

seq1  ACTAACCTATTTCCTAACTGAACTGGCATGAAGGAAACGTTTGAGACCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACCTATTTCCTAACTGAACTGGCATGAAGGAAACGTTTGAGACCTA  450

seq1  GGCTCTTTCCTAATCTTGGTTTAACTAAGGCTTGACACAAAGGATGGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTTCCTAATCTTGGTTTAACTAAGGCTTGACACAAAGGATGGGCC  500

seq1  TGTGTCCTGCAAAAGCATGAAAGATGGAATTC  532
      ||||||||||||||||||||||||||||||||
seq2  TGTGTCCTGCAAAAGCATGAAAGATGGAATTC  532


seq1: chr12_98698871_98699970
seq2: B6Ng01-239M11.g_64_1158

seq1  GAATTCAACAATTTAAGCAAAATTAGAAATATATTTTAATTAGCATATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAATTTAAGCAAAATTAGAAATATATTTTAATTAGCATATAA  50

seq1  AACCATGAAAAATTGCATAATGCTTCTATCTTGTGCAGATCATTCAGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGAAAAATTGCATAATGCTTCTATCTTGTGCAGATCATTCAGCAC  100

seq1  TACTTACTTTAGAGTACAAGTCTTATAATAGATACCATGAGAATTATACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACTTTAGAGTACAAGTCTTATAATAGATACCATGAGAATTATACT  150

seq1  TTATAATTTGAATTTATTTTCTAATTAAAACCAATCAAAAATTAATATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTTGAATTTATTTTCTAATTAAAACCAATCAAAAATTAATATTC  200

seq1  ACTAACTAAAAGCACTAGAGCTAATTATTGAAATTAGATAGCATTGTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACTAAAAGCACTAGAGCTAATTATTGAAATTAGATAGCATTGTTTC  250

seq1  TAATAAATGTGAAAATGATTAAACAACGGTTTGATTTCAAGTGATTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATGTGAAAATGATTAAACAACGGTTTGATTTCAAGTGATTATAA  300

seq1  GTGATGGCTGAAAAAGCTGGCTAATTTTAATGTTATAGAACATCCTGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGCTGAAAAAGCTGGCTAATTTTAATGTTATAGAACATCCTGAAT  350

seq1  AATTTAATAACATTATGCCATCTCAGTACAATTTTCTGCCATATTTCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATAACATTATGCCATCTCAGTACAATTTTCTGCCATATTTCACA  400

seq1  AATATCCCTGGGTGAAAGTACAAGCTTACTGTACACATATAGTCTTCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCCTGGGTGAAAGTACAAGCTTACTGTACACATATAGTCTTCAAT  450

seq1  GGAAATAATCTGCTTCTCTCATCTGTGGTTAAATATGGCCATGTGTTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAATCTGCTTCTCTCATCTGTGGTTAAATATGGCCATGTGTTGTC  500

seq1  ATCTACACACCTTTCTCATCTTTTGGGGCTTTTCAATGAAACAAGAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACACACCTTTCTCATCTTTTGGGGCTTTTCAATGAAACAAGAGTTT  550

seq1  ATTTGCTCACTTAAAGTTGAAGGCATTGTGGATTCATACAATTGTTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTCACTTAAAGTTGAAGGCATTGTGGATTCATACAATTGTTTCTT  600

seq1  AAATTCGTTGGAAAATATATAGAAATATAGGCCAGCCAAACATGGTAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCGTTGGAAAATATATAGAAATATAGGCCAGCCAAACATGGTAGCA  650

seq1  GATGACAGAAAACACTTCAGCAATAAAGTCAGATAGATGTAGGAGTTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACAGAAAACACTTCAGCAATAAAGTCAGATAGATGTAGGAGTTCAA  700

seq1  AACCATCCTTGGCTAGATACTAAGTTCAAGGCCAACCTGGCCCACCAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCCTTGGCTAGATACTAAGTTCAAGGCCAACCTGGCCCACCAGTC  750

seq1  CCTGTCTCAAACCCTCATGCATGCAAGAATGAAACTAAGTCCATGTGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCAAACCCTCATGCATGCAAGAATGAAACTAAGTCCATGTGCTA  800

seq1  CTTTAATTTTATTTTACTAAGGACAAAAACATGGTGATGTGTCTTCAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTTTATTTTACTAAGGACAAAAACATGGTGATGTGTCTTCAAGC  850

seq1  AAAGCTACTTGCATGGAACAGTGAACAACCTGCAGTACATCATGCCTACG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTACTTGCATGGAACAGTGAACAACCTGCAGTACATCATGCCTACG  900

seq1  TCACACTTAATAATTGAATTATTCTACTACTTAGTCACTAGTAAAACTGT  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCACACTTAATAATTGAATTATTCTACTACTTAGTCACTAGT-AAACTGT  949

seq1  AGAAAATTTGAATGTTAGTGATGTGTAGTCACC-TTAGATTAAAATGCTG  999
      ||||||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  AGAAAATTTGAATGTTAGTGATGTGTAGTCACCTTTAGATT-AAATGCTG  998

seq1  ATAAATAATGACTGTGAGAAGAAAATACTGGAG-TGTGTAATTTCTTTTC  1048
      ||||   ||||||||||||   ||||||||||| ||||| ||||||||||
seq2  ATAA--TATGACTGTGAGA--GAAATACTGGAGTTGTGT-ATTTCTTTTC  1043

seq1  A-CTCAGATCAATGTTTGTAGCTTTATTTAGAAGATGAATAATTGAATTT  1097
      | ||||||||| |||||||||||||||||||||||||||| ||||| |||
seq2  ACCTCAGATCATTGTTTGTAGCTTTATTTAGAAGATGAAT-ATTGACTTT  1092

seq1  TCA  1100
      |||
seq2  TCA  1095


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