BAC Information

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BAC

Clone NameB6Ng01-239N19
Chromosome12 (Build37)
Map Location 90,163,353 - 90,341,661
singlet/doubletdoublet
Overlap geneNrxn3
Upstream geneLOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239N19.bB6Ng01-239N19.g
ACCGA050177GA050178
length1,1391,150
definitionB6Ng01-239N19.b B6Ng01-239N19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,340,560 - 90,341,661)(90,163,353 - 90,164,474)
sequence
gaattcaggtcctcaggcagcacagctagcactttgctgagttttctctc
tggccccacaaacaccctttcattccctttgttctgagttttagaacaga
gataacatgctggcagataatagaagctgagcagtttaaattcaatacat
ttcattaaacctgcttctaccatatctctatccatataggttgctggtta
aaaatgaggctgcctttgagtaacaattactactgtactcaaaagacaac
ctcatgacttccttgtgacctattctatagtagaattgaatgatttttga
aactaggttataaaatgtctcctagtttctacttgcatttctataatgcc
ctttgtcatatttgctcctcttagcatctagccacaaagtgataagtcct
agggactacttgggcagccatgcgaaggttctttccagttgattctttca
tcatctgtcaatcatatatgagaacaaggtaccttagctcaactaaatct
attgatttatagaattaaaagatgattttttaaaagcctgttttattgaa
ccactaagtttcagatcatttcttgcaaaagttaaacaaaacagaaaatg
aattttacagatatatataacatacactcatatactatatatgtgttttt
aattaaataaaaatatttaaacagtagcccttctatataccaatattaaa
catgttgagaaggagatcatagatatgctctcattcacaatagcttcaaa
atatctaggaataaacctaaccaaggaattcgaaaaatctctacaatgaa
aaattttatatctatgaaaaaagaaaatgagaaagacactggaaggtgga
aagacctcctaggctcatggattgggtataattaatattgtaaaaatagt
tatcccaccaaggaaatttacagatttaaatataccaaaaaacatattca
tgaaatagtctttgcagattagaaaaatatcctaataacttatatggaat
catagaaattccctggatatccaagcaggagcaaaggaagaatactggga
aaggattattattactagattcaagctacattacagaaaggtatgttgat
aaaaacaacatggtactttaagcaaaaccacacatgtag
gaattccataaatattagatatagaggcctaggattctctgatcatggac
caggtaagaaaaataactttgaaagtaccaggagttgaggcacatgactg
tgtgtgactaagtggctttaatctgaaagaaagctttagtctaaattcga
tactacccttccatatggggaactgacatagaagcaaggcctgctgggaa
cagcagggagagggggaagaagagacaggagtgtgatggcagtgtgaggc
tgtttaccacgtagaagaggagagagtcagcggttcctgatgaatgtgtt
tgtgagagcatactacattttgtcagtgtatatagttctctaaatcttat
caagtcatgtatttctaaaagtaagctttaagacacagcccataagtgtt
ataaaagtctatcttactttaagacagaattgttggaaaagtgctttaac
cagtatactgttatgatatttaactactaagatttcttctatcaggttgt
tttgtttttgttttttgtcactccagtcaagtcaccattcatgtgaggcg
acatcctgttccaggtaaccttcaaagggtcttagggaaataatggtatt
aattgtaaagtgcttcttagcctggcttctaaagaaagctaactgaactt
aagtcatagctctaggataccattaaggataagtgagctatttatcactt
catattagcagggacttagacttttgctagatgaacttgtaaactccatc
tgattaaacctaaactgaggtagggcctcagcctatctatggtgcctctg
cattcatgagcaataaaacccaagctctgtctcataagatgtactctcag
tatggggtaagggtcacctgtttgtagctgacttgtagatggtcctaaag
ttcttaacccatccttcggtgccctggaacaatgaattgcattctaatct
gttggagtatgttttttagcctgttagaaaggcttattatatgaggaaca
aattcattccagcaaaatagaccttcttaaggtatccacataaaaaaaat
gtagagcacagtattttttaatatttacttcctccaataaacaaaccttt
taaaatacttgtaaaacatggctcaatctcacctttgccagatatctcca

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_90340560_90341661
seq2: B6Ng01-239N19.b_78_1184 (reverse)

seq1  CTACATGTGTGTTTTTGCTT-AAGTACCATGTTGTTTTTATCACCATAC-  48
      ||||||||||| |||||||| |||||||||||||||||||||| ||||| 
seq2  CTACATGTGTGGTTTTGCTTAAAGTACCATGTTGTTTTTATCAACATACC  50

seq1  -TTCTGTAATGTAGCTTGAAATCTGGT-ATAATAATC--TTTCCAGTATT  94
       ||||||||||||||||| ||||| || |||||||||  || ||||||||
seq2  TTTCTGTAATGTAGCTTG-AATCTAGTAATAATAATCCTTTCCCAGTATT  99

seq1  CTTCCTTTGCTCCTGCTTTGGATATCCA-GGAATTTCTATGATTCCATAT  143
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  CTTCCTTTGCTCCTGC-TTGGATATCCAGGGAATTTCTATGATTCCATAT  148

seq1  AAGTTATTAGGATATTTTTCTAATTCTGCAAAGACTATTTCATGAATATG  193
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAGTTATTAGGATATTTTTCTAA-TCTGCAAAGACTATTTCATGAATATG  197

seq1  TTTTTTGGTATATTT-AATCTGTAAATTTCCTTTGGTGGGATAACTATTT  242
      ||||||||||||||| ||||||||||||||| ||||||||||||||||||
seq2  TTTTTTGGTATATTTAAATCTGTAAATTTCC-TTGGTGGGATAACTATTT  246

seq1  TTACAATATTAATTATA-CCAATCCATGAGCCTAGGAGGTCTTTCCACCT  291
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTACAATATTAATTATACCCAATCCATGAGCCTAGGAGGTCTTTCCACCT  296

seq1  TCCAGTGTCTTTCTCATTTTCTTTTTTCATAGATATAAAATTTTTCATTG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGTCTTTCTCATTTTCTTTTTTCATAGATATAAAATTTTTCATTG  346

seq1  TAGAGATTTTTCGAATTCCTTGGTTAGGTTTATTCCTAGATATTTTGAAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATTTTTCGAATTCCTTGGTTAGGTTTATTCCTAGATATTTTGAAG  396

seq1  CTATTGTGAATGAGAGCATATCTATGATCTCCTTCTCAACATGTTTAATA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTGAATGAGAGCATATCTATGATCTCCTTCTCAACATGTTTAATA  446

seq1  TTGGTATATAGAAGGGCTACTGTTTAAATATTTTTATTTAATTAAAAACA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATATAGAAGGGCTACTGTTTAAATATTTTTATTTAATTAAAAACA  496

seq1  CATATATAGTATATGAGTGTATGTTATATATATCTGTAAAATTCATTTTC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATAGTATATGAGTGTATGTTATATATATCTGTAAAATTCATTTTC  546

seq1  TGTTTTGTTTAACTTTTGCAAGAAATGATCTGAAACTTAGTGGTTCAATA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTAACTTTTGCAAGAAATGATCTGAAACTTAGTGGTTCAATA  596

seq1  AAACAGGCTTTTAAAAAATCATCTTTTAATTCTATAAATCAATAGATTTA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGCTTTTAAAAAATCATCTTTTAATTCTATAAATCAATAGATTTA  646

seq1  GTTGAGCTAAGGTACCTTGTTCTCATATATGATTGACAGATGATGAAAGA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGCTAAGGTACCTTGTTCTCATATATGATTGACAGATGATGAAAGA  696

seq1  ATCAACTGGAAAGAACCTTCGCATGGCTGCCCAAGTAGTCCCTAGGACTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTGGAAAGAACCTTCGCATGGCTGCCCAAGTAGTCCCTAGGACTT  746

seq1  ATCACTTTGTGGCTAGATGCTAAGAGGAGCAAATATGACAAAGGGCATTA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTTGTGGCTAGATGCTAAGAGGAGCAAATATGACAAAGGGCATTA  796

seq1  TAGAAATGCAAGTAGAAACTAGGAGACATTTTATAACCTAGTTTCAAAAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATGCAAGTAGAAACTAGGAGACATTTTATAACCTAGTTTCAAAAA  846

seq1  TCATTCAATTCTACTATAGAATAGGTCACAAGGAAGTCATGAGGTTGTCT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAATTCTACTATAGAATAGGTCACAAGGAAGTCATGAGGTTGTCT  896

seq1  TTTGAGTACAGTAGTAATTGTTACTCAAAGGCAGCCTCATTTTTAACCAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTACAGTAGTAATTGTTACTCAAAGGCAGCCTCATTTTTAACCAG  946

seq1  CAACCTATATGGATAGAGATATGGTAGAAGCAGGTTTAATGAAATGTATT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTATATGGATAGAGATATGGTAGAAGCAGGTTTAATGAAATGTATT  996

seq1  GAATTTAAACTGCTCAGCTTCTATTATCTGCCAGCATGTTATCTCTGTTC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTAAACTGCTCAGCTTCTATTATCTGCCAGCATGTTATCTCTGTTC  1046

seq1  TAAAACTCAGAACAAAGGGAATGAAAGGGTGTTTGTGGGGCCAGAGAGAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTCAGAACAAAGGGAATGAAAGGGTGTTTGTGGGGCCAGAGAGAA  1096

seq1  AACTCAGCAAA  1102
      |||||||||||
seq2  AACTCAGCAAA  1107

seq1: chr12_90163353_90164474
seq2: B6Ng01-239N19.g_65_1214

seq1  GAATTCCATAAATATTAGATATAGAGGCCTAGGATTCTCTGATCATGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAATATTAGATATAGAGGCCTAGGATTCTCTGATCATGGAC  50

seq1  CAGGTAAGAAAAATAACTTTGAAAGTACCAGGAGTTGAGGCACATGACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAGAAAAATAACTTTGAAAGTACCAGGAGTTGAGGCACATGACTG  100

seq1  TGTGTGACTAAGTGGCTTTAATCTGAAAGAAAGCTTTAGTCTAAATTCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGACTAAGTGGCTTTAATCTGAAAGAAAGCTTTAGTCTAAATTCGA  150

seq1  TACTACCCTTCCATATGGGGAACTGACATAGAAGCAAGGCCTGCTGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACCCTTCCATATGGGGAACTGACATAGAAGCAAGGCCTGCTGGGAA  200

seq1  CAGCAGGGAGAGGGGGAAGAAGAGACAGGAGTGTGATGGCAGTGTGAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGGAGAGGGGGAAGAAGAGACAGGAGTGTGATGGCAGTGTGAGGC  250

seq1  TGTTTACCACGTAGAAGAGGAGAGAGTCAGCGGTTCCTGATGAATGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACCACGTAGAAGAGGAGAGAGTCAGCGGTTCCTGATGAATGTGTT  300

seq1  TGTGAGAGCATACTACATTTTGTCAGTGTATATAGTTCTCTAAATCTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAGCATACTACATTTTGTCAGTGTATATAGTTCTCTAAATCTTAT  350

seq1  CAAGTCATGTATTTCTAAAAGTAAGCTTTAAGACACAGCCCATAAGTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCATGTATTTCTAAAAGTAAGCTTTAAGACACAGCCCATAAGTGTT  400

seq1  ATAAAAGTCTATCTTACTTTAAGACAGAATTGTTGGAAAAGTGCTTTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGTCTATCTTACTTTAAGACAGAATTGTTGGAAAAGTGCTTTAAC  450

seq1  CAGTATACTGTTATGATATTTAACTACTAAGATTTCTTCTATCAGGTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATACTGTTATGATATTTAACTACTAAGATTTCTTCTATCAGGTTGT  500

seq1  TTTGTTTTTGTTTTTTGTCACTCCAGTCAAGTCACCATTCATGTGAGGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTGTTTTTTGTCACTCCAGTCAAGTCACCATTCATGTGAGGCG  550

seq1  ACATCCTGTTCCAGGTAACCTTCAAAGGGTCTTAGGGAAATAATGGTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTGTTCCAGGTAACCTTCAAAGGGTCTTAGGGAAATAATGGTATT  600

seq1  AATTGTAAAGTGCTTCTTAGCCTGGCTTCTAAAGAAAGCTAACTGAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTAAAGTGCTTCTTAGCCTGGCTTCTAAAGAAAGCTAACTGAACTT  650

seq1  AAGTCATAGCTCTAGGATACCATTAAGGATAAGTGAGCTATTTATCACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATAGCTCTAGGATACCATTAAGGATAAGTGAGCTATTTATCACTT  700

seq1  CATATTAGCAGGGACTTAGACTTTTGCTAGATGAACTTGTAAACTCCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTAGCAGGGACTTAGACTTTTGCTAGATGAACTTGTAAACTCCATC  750

seq1  TGATTAAACCTAAACTGAGGTAGGGCCTCAGCCTATCTATGGTGCCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAAACCTAAACTGAGGTAGGGCCTCAGCCTATCTATGGTGCCTCTG  800

seq1  CATTCATGAGCAATAAAACCCAAGCTCTGTCTCATAAGATGTACTCTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATGAGCAATAAAACCCAAGCTCTGTCTCATAAGATGTACTCTCAG  850

seq1  TATGGGGTAAGGGTCACCTG-TTGTAGCTGACTTGTAGATGGTCCT-AAG  898
      |||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  TATGGGGTAAGGGTCACCTGTTTGTAGCTGACTTGTAGATGGTCCTAAAG  900

seq1  GTCTTAA-CCATCC-TCGGTG-CCTGGA--CATGAATTGCA-TCT-ATCT  941
       |||||| |||||| |||||| ||||||   |||||||||| ||| ||||
seq2  TTCTTAACCCATCCTTCGGTGCCCTGGAACAATGAATTGCATTCTAATCT  950

seq1  GTTGGAGTATG-TTTTTAG-CTGTTAGAAAG--CTATTATAATGAGG-AC  986
      ||||||||||| ||||||| |||||||||||   |||||| |||||| ||
seq2  GTTGGAGTATGTTTTTTAGCCTGTTAGAAAGGCTTATTAT-ATGAGGAAC  999

seq1  AAATTCATTCCAGC-AAATAGAC--TCTAAGGGTAT-CACAT--AAAAAA  1030
      |||||||||||||| ||||||||  ||| | ||||| |||||  ||||||
seq2  AAATTCATTCCAGCAAAATAGACCTTCTTAAGGTATCCACATAAAAAAAA  1049

seq1  TGTAGAGCACAGT-TATTTTTATATTTAC-TCCTCCAATAAACAAACCTT  1078
      ||||||||||||| | |||| |||||||| ||||||||||||||||||||
seq2  TGTAGAGCACAGTATTTTTTAATATTTACTTCCTCCAATAAACAAACCTT  1099

seq1  T--AAATAC-TGGAAAACAGTGCTC-ATCTCACCTT--GCAG-TATCTCC  1121
      |  |||||| || ||||||  |||| ||||||||||   ||| |||||||
seq2  TTAAAATACTTGTAAAACATGGCTCAATCTCACCTTTGCCAGATATCTCC  1149

seq1  A  1122
      |
seq2  A  1150