BAC Information

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BAC

Clone NameB6Ng01-240A11
Chromosome12 (Build37)
Map Location 89,577,408 - 89,578,579
singlet/doubletsinglet
Overlap genenone
Upstream gene4933437F05Rik, AI413782, Ahsa1, Thsd3, Sptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475
Downstream geneLOC620915, LOC435314, Adck1, LOC100039261, EG666915, Nrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240A11.bB6Ng01-240A11.g
ACCGA050301GA050302
length1,1801,190
definitionB6Ng01-240A11.b B6Ng01-240A11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtctttatgttgttataatttcaagagcccagattttcaacct
gtagctaggagaggcagagtagcagggagtgaagcaggcagagcaggaac
agattcagaaggaagaaggccaggtctatctgcaccgcctgtaccccctg
caagaggaggtcctgcagctcaaccagcacctggatgcttccagtcagca
caaagacctgctgaatgtggatattctctgaaggaggagtgagaaaggta
agttgattctttctttctcagataaggtttttctgtgtagccctggatgc
tctggaactccttctatataccaggctggtctagatcagatacccacttg
cctgtgcttcccaattcaaaggcagaaaggagactgctgtggctcacatt
gggcagagcttggaaaaaaatatatatgtatatacacacacacacacaca
cacacacacacacacacacagagatatatatatatgtatatatatatata
tatatatatatatatatatatgtacacatacatacatatatttcctcaaa
accttgcctccacagggacataactcctccaacaaggtcacacctcctga
tattaccacaactgtaccaagcataattcaatcactaaactaaataaagc
acacaaaaggacaattcttttttcttattatggttttcttttgattagtt
attctatttgtttacatatcatatgacatctgcccctctaggactactcc
tccacaaaccccccatcccatccaccctgtcccctctctcctttgcctct
atgagggtactcccacacccatccacctctccactcctgccccaccattc
cagattcccctatgttggggcatcaagccttccaggaccaaagacctcct
cctcccacttgatgccaggcaaggtcatcctctgctacttatgtatctgg
gagtcatgggttcctcaagatgctggttttagatttttttttaattattt
ttgtaacttttggaatattaatataactcatcaattgaaagaattccccg
aggggagtccctcttcggggaaggcatgccacccagtaggaactgaccta
atccgtatgtattaaccacaaggcttttatggccacactacacccataca
tatcattcgcctcagccatcatgctggggt
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaagaatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttctgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgttccacttggttgatttcacccctgagtttgattatt
tcctgccgtctactcctcttgggtgaatttgcttcctttttttctagagc
ttttagatgtgttgtcaagtctgctagtatgtgctctctcccgttttttt
cttgaggcatctcatagctatgagtttccctctagaaatgctttcatttg
tgttccaaggttttggtacgtgtggccttcattttcattaactctaaaaa
gtcttgatttcttttctttattccttcttgaccaagcttatcattgagaa
agagtgttgtcaggtttcatgtggagaggtgccttctgttattattggta
tggagaactagcgtagtcgcatgtgcgatcttctagtact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_89577408_89578579
seq2: B6Ng01-240A11.b_47_1226 (reverse)

seq1  ACCCCAGCATGCTGGCTTGAGCGCTTTGTTGTTGTTTGTGTGT-GTGTGT  49
      ||||||||||| |||||   |||  |  |   ||| || |||| ||||| 
seq2  ACCCCAGCATGATGGCTGAGGCGAATGAT--ATGTATGGGTGTAGTGTG-  47

seq1  GCCATTAAAAGCCTCGT-GTTATTACA-AC-GATTAGGTCAGTGTCCTAC  96
      |||| ||||||||| || |||| |||| || |||||||||||| ||||||
seq2  GCCA-TAAAAGCCTTGTGGTTAATACATACGGATTAGGTCAGT-TCCTAC  95

seq1  TGGGT-GCATGCC-TCCCCGAAGAGGGACTCCCCTCGGGGA--TCTTTCA  142
      ||||| ||||||| |||||||||||||||||||||||||||  |||||||
seq2  TGGGTGGCATGCCTTCCCCGAAGAGGGACTCCCCTCGGGGAATTCTTTCA  145

seq1  AATGATGGAATTATA-TAATATTCCAAAAGTTACAAAAATAAT--AAAAA  189
      | |||| || ||||| |||||||||||||||||||||||||||  |||||
seq2  ATTGAT-GAGTTATATTAATATTCCAAAAGTTACAAAAATAATTAAAAAA  194

seq1  AAATCTAAAACCAGCATCTTGGAGGACCCATGACT-CCAGATACATAAGT  238
      |||||||||||||||||||||  | |||||||||| ||||||||||||||
seq2  AAATCTAAAACCAGCATCTTGAGGAACCCATGACTCCCAGATACATAAGT  244

seq1  AGCAGAGGATGGCCTTGCCTGGCATC-AGTGGGAGG-GGAGGTCTTTGGT  286
      ||||||||||| |||||||||||||| ||||||||| |||||||||||||
seq2  AGCAGAGGATGACCTTGCCTGGCATCAAGTGGGAGGAGGAGGTCTTTGGT  294

seq1  CCTGGGAAGGCTTGATGCCCCAACATAGGGGAATCTGGAATGGTGGGGCA  336
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCT-GGAAGGCTTGATGCCCCAACATAGGGGAATCTGGAATGGTGGGGCA  343

seq1  GGAGTGGAGAGGTGGATGGGTGTGGGAGTACCCTCATAGAGGCAAAGGAG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGAGAGGTGGATGGGTGTGGGAGTACCCTCATAGAGGCAAAGGAG  393

seq1  AGAGGGGACAGGGTGGATGGGATGGGGGGTTTGTGGAGGAGTAGTCCTAG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGACAGGGTGGATGGGATGGGGGGTTTGTGGAGGAGTAGTCCTAG  443

seq1  AGGGGCAGATGTCATATGATATGTAAACAAATAGAATAACTAATCAAAAG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCAGATGTCATATGATATGTAAACAAATAGAATAACTAATCAAAAG  493

seq1  AAAACCATAATAAGAAAAAAGAATTGTCCTTTTGTGTGCTTTA-TTAGTT  535
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAAACCATAATAAGAAAAAAGAATTGTCCTTTTGTGTGCTTTATTTAGTT  543

seq1  TAGTGATTGAATTATGCTTGGTACAGTTGTGGTAATATCAGGAGGTGTGA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATTGAATTATGCTTGGTACAGTTGTGGTAATATCAGGAGGTGTGA  593

seq1  CCTTGTTGGAGGAGTTATGTCCCTGTGGAGGCAAGGTTTTGAGGAAATAT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTGGAGGAGTTATGTCCCTGTGGAGGCAAGGTTTTGAGGAAATAT  643

seq1  ATGTATGTATGTGTACATATATATATATATATATATATATATATATATAT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTATGTGTACATATATATATATATATATATATATATATATATAT  693

seq1  ACATATATATATATCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATATATATCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  743

seq1  GTGTATATACATATATATTTTTTTCCAAGCTCTGCCCAATGTGAGCCACA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATATACATATATATTTTTTTCCAAGCTCTGCCCAATGTGAGCCACA  793

seq1  GCAGTCTCCTTTCTGCCTTTGAATTGGGAAGCACAGGCAAGTGGGTATCT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTCCTTTCTGCCTTTGAATTGGGAAGCACAGGCAAGTGGGTATCT  843

seq1  GATCTAGACCAGCCTGGTATATAGAAGGAGTTCCAGAGCATCCAGGGCTA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGACCAGCCTGGTATATAGAAGGAGTTCCAGAGCATCCAGGGCTA  893

seq1  CACAGAAAAACCTTATCTGAGAAAGAAAGAATCAACTTACCTTTCTCACT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAAAACCTTATCTGAGAAAGAAAGAATCAACTTACCTTTCTCACT  943

seq1  CCTCCTTCAGAGAATATCCACATTCAGCAGGTCTTTGTGCTGACTGGAAG  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTCAGAGAATATCCACATTCAGCAGGTCTTTGTGCTGACTGGAAG  993

seq1  CATCCAGGTGCTGGTTGAGCTGCAGGACCTCCTCTTGCAGGGGGTACAGG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGGTGCTGGTTGAGCTGCAGGACCTCCTCTTGCAGGGGGTACAGG  1043

seq1  CGGTGCAGATAGACCTGGCCTTCTTCCTTCTGAATCTGTTCCTGCTCTGC  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGCAGATAGACCTGGCCTTCTTCCTTCTGAATCTGTTCCTGCTCTGC  1093

seq1  CTGCTTCACTCCCTGCTACTCTGCCTCTCCTAGCTACAGGTTGAAAATCT  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCACTCCCTGCTACTCTGCCTCTCCTAGCTACAGGTTGAAAATCT  1143

seq1  GGGCTCTTGAAATTATAACAACATAAAGACAGAATTC  1172
      |||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTTGAAATTATAACAACATAAAGACAGAATTC  1180