BAC Information

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BAC

Clone NameB6Ng01-240H04
Chromosome12 (Build37)
Map Location 85,780,158 - 85,845,359
singlet/doubletdoublet
Overlap geneAldh6a1, Lin52
Upstream geneDpf3, Wdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2
Downstream geneChx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240H04.bB6Ng01-240H04.g
ACCGA050616GA050617
length9941,111
definitionB6Ng01-240H04.b B6Ng01-240H04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,844,706 - 85,845,359)(85,780,158 - 85,781,280)
sequence
gaattccaagacagccagggctacacagagaaaccctatctcgaaaaaca
taaaaacaaaacaaaaaaacaaatccacaaaccaataatcctacgtccag
ctacatcatatagcaactttctttaatgcaagaatttcctttttttaaaa
aaaatatatttattttatgttcttgggtattttgtttacatgtctgtctg
tgcaccacatgcctgcctggtgctcagggaatccagaagaatgcatcaga
tcccttgagactgcagttacagacagttgtaagcttgcatgtaggtacta
ggaatcacaccctggtcctgtggaagagcagccaatgctcttaactgctg
atctttccaaccaacatttcctatttcttgttttgtttttagagtcaaaa
ttttgctatgtagcccaggttggtgtcttaattcatcatcttcctatctc
tgagttccaagtgctatctatgatttcagaaatctgccaccacacatcct
acccagccagcgcttctttcccttttctcttttgagtcagggtctcctgc
atctccatctggcttccgtcttgttagagagtgaagggtgactttgaact
tctctgatccttttctctggggaacagaaccaggcttttgtctatgctag
acaagcactatatataccatctgggctccatccccagccccaaactgggg
ttttattcaaatactgagtgcttaggggagcctggcgtccttccaacccc
aaaggggagcccttttactggtccatcaaagtcaaccatggccacctcac
ttctctgacagggaaagatccgggtataggaatctgaccaacactgttca
atagcttatgaggggaatttgccttaaagcttctgatgttttctcactga
tacaaagatttcagagggaggagaatctttctttttaagggtactactgt
cagcatatgatgtgaaacctgtatgggtcatcttaaaaatatga
gaattcagttcccagcacccacactgcacacctcacaaccaactgtagcc
tcagtttcaggagctccagtaccctttctggcctctgtgggtacccacac
acatatggcggacacacagagtcacatgcaccttaaataaacattaaaaa
tcccaaccaattttttctttgggagtcagattcagtagtcatataaaaga
gttaccatcatgttgtccatggataatgttcagtgttccgtcaggggccc
cagaatcctgaagcaacttagcaaggagcatagttgctccaggtactcgc
tctgatggtttcattaggaaagtatttccacaaaccatagccatgggaaa
catccaaagggggatcatggcaggaaaattaaatggtgcaatgcctgcac
acacccccagaggcagacggtaggaataaaggtccatgtctttggtgata
gatggcatggtctctcccagcatgagggatgtcacactacaggcatgctc
aaccacctctggaagagaaaagacatcagtgaggtcaccacctttccatg
ctaaatactacttagctttgtcacactccattcgatcctgacaatcaggg
gtgggtcatgccactgacagcgatttgtccttccatgttcctcagattct
ctgagggggtaaaaaagatagtaagatgtatatatattctgaaatatcat
ttgtgcttaaacaaatcagtaaattagtctcaaaagtacctgaccaatat
tgccttaaaattatgttaaaaggtattgctgggcatggtagtacacaact
taaaatcctagcacatgggaggctgaggtaggaggactgtaggtcagagc
cagccttggctacatagttccaaagcagccagtgagcctctaccttaaaa
gatgaaatatatatatatatcacatgagagcaaaatctacacaaagaatc
caccttcccagtgtgggggctgcctccatattctttttgatccctcccac
aagtccagtgaggggctcccagcttacgagctcggaatacatctctttca
gcatcagcagagtcttccctgtcagtgtgatagctgccatttcttttcta
cagaaacatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_85844706_85845359
seq2: B6Ng01-240H04.b_43_696 (reverse)

seq1  TTGTCTAGCATAGACAAAAGCCTGGTTCTGTTCCCCAGAGAAAAGGATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAGCATAGACAAAAGCCTGGTTCTGTTCCCCAGAGAAAAGGATCA  50

seq1  GAGAAGTTCAAAGTCACCCTTCACTCTCTAACAAGACGGAAGCCAGATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTTCAAAGTCACCCTTCACTCTCTAACAAGACGGAAGCCAGATGG  100

seq1  AGATGCAGGAGACCCTGACTCAAAAGAGAAAAGGGAAAGAAGCGCTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAGGAGACCCTGACTCAAAAGAGAAAAGGGAAAGAAGCGCTGGCT  150

seq1  GGGTAGGATGTGTGGTGGCAGATTTCTGAAATCATAGATAGCACTTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGGATGTGTGGTGGCAGATTTCTGAAATCATAGATAGCACTTGGAA  200

seq1  CTCAGAGATAGGAAGATGATGAATTAAGACACCAACCTGGGCTACATAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGATAGGAAGATGATGAATTAAGACACCAACCTGGGCTACATAGC  250

seq1  AAAATTTTGACTCTAAAAACAAAACAAGAAATAGGAAATGTTGGTTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTGACTCTAAAAACAAAACAAGAAATAGGAAATGTTGGTTGGAA  300

seq1  AGATCAGCAGTTAAGAGCATTGGCTGCTCTTCCACAGGACCAGGGTGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGCAGTTAAGAGCATTGGCTGCTCTTCCACAGGACCAGGGTGTGA  350

seq1  TTCCTAGTACCTACATGCAAGCTTACAACTGTCTGTAACTGCAGTCTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGTACCTACATGCAAGCTTACAACTGTCTGTAACTGCAGTCTCAA  400

seq1  GGGATCTGATGCATTCTTCTGGATTCCCTGAGCACCAGGCAGGCATGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTGATGCATTCTTCTGGATTCCCTGAGCACCAGGCAGGCATGTGG  450

seq1  TGCACAGACAGACATGTAAACAAAATACCCAAGAACATAAAATAAATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGACAGACATGTAAACAAAATACCCAAGAACATAAAATAAATATA  500

seq1  TTTTTTTTAAAAAAAGGAAATTCTTGCATTAAAGAAAGTTGCTATATGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAAAAAAAGGAAATTCTTGCATTAAAGAAAGTTGCTATATGAT  550

seq1  GTAGCTGGACGTAGGATTATTGGTTTGTGGATTTGTTTTTTTGTTTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGGACGTAGGATTATTGGTTTGTGGATTTGTTTTTTTGTTTTGTT  600

seq1  TTTATGTTTTTCGAGATAGGGTTTCTCTGTGTAGCCCTGGCTGTCTTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTTTTTCGAGATAGGGTTTCTCTGTGTAGCCCTGGCTGTCTTGGA  650

seq1  ATTC  654
      ||||
seq2  ATTC  654

seq1: chr12_85780158_85781280
seq2: B6Ng01-240H04.g_63_1173

seq1  GAATTCAGTTCCCAGCACCCACACTGCACACCTCACAACCAACTGTAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCCCAGCACCCACACTGCACACCTCACAACCAACTGTAGCC  50

seq1  TCAGTTTCAGGAGCTCCAGTACCCTTTCTGGCCTCTGTGGGTACCCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTCAGGAGCTCCAGTACCCTTTCTGGCCTCTGTGGGTACCCACAC  100

seq1  ACATATGGCGGACACACAGAGTCACATGCACCTTAAATAAACATTAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGGCGGACACACAGAGTCACATGCACCTTAAATAAACATTAAAAA  150

seq1  TCCCAACCAATTTTTTCTTTGGGAGTCAGATTCAGTAGTCATATAAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACCAATTTTTTCTTTGGGAGTCAGATTCAGTAGTCATATAAAAGA  200

seq1  GTTACCATCATGTTGTCCATGGATAATGTTCAGTGTTCCGTCAGGGGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCATCATGTTGTCCATGGATAATGTTCAGTGTTCCGTCAGGGGCCC  250

seq1  CAGAATCCTGAAGCAACTTAGCAAGGAGCATAGTTGCTCCAGGTACTCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCCTGAAGCAACTTAGCAAGGAGCATAGTTGCTCCAGGTACTCGC  300

seq1  TCTGATGGTTTCATTAGGAAAGTATTTCCACAAACCATAGCCATGGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGGTTTCATTAGGAAAGTATTTCCACAAACCATAGCCATGGGAAA  350

seq1  CATCCAAAGGGGGATCATGGCAGGAAAATTAAATGGTGCAATGCCTGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAAGGGGGATCATGGCAGGAAAATTAAATGGTGCAATGCCTGCAC  400

seq1  ACACCCCCAGAGGCAGACGGTAGGAATAAAGGTCCATGTCTTTGGTGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCCAGAGGCAGACGGTAGGAATAAAGGTCCATGTCTTTGGTGATA  450

seq1  GATGGCATGGTCTCTCCCAGCATGAGGGATGTCACACTACAGGCATGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCATGGTCTCTCCCAGCATGAGGGATGTCACACTACAGGCATGCTC  500

seq1  AACCACCTCTGGAAGAGAAAAGACATCAGTGAGGTCACCACCTTTCCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCTCTGGAAGAGAAAAGACATCAGTGAGGTCACCACCTTTCCATG  550

seq1  CTAAATACTACTTAGCTTTGTCACACTCCATTCGATCCTGACAATCAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATACTACTTAGCTTTGTCACACTCCATTCGATCCTGACAATCAGGG  600

seq1  GTGGGTCATGCCACTGACAGCGATTTGTCCTTCCATGTTCCTCAGATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTCATGCCACTGACAGCGATTTGTCCTTCCATGTTCCTCAGATTCT  650

seq1  CTGAGGGGGTAAAAAAGATAGTAAGATGTATATATATTCTGAAATATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGGGTAAAAAAGATAGTAAGATGTATATATATTCTGAAATATCAT  700

seq1  TTGTGCTTAAACAAATCAGTAAATTAGTCTCAAAAGTACCTGACCAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTTAAACAAATCAGTAAATTAGTCTCAAAAGTACCTGACCAATAT  750

seq1  TGCCTTAAAATTATGTTAAAAGGTATTGCTGGGCATGGTAGTACACAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTAAAATTATGTTAAAAGGTATTGCTGGGCATGGTAGTACACAACT  800

seq1  TAAAATCCTAGCACATGGGAGGCTGAGGTAGGAGGACTGTAGGTCAGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCCTAGCACATGGGAGGCTGAGGTAGGAGGACTGTAGGTCAGAGC  850

seq1  CAGCCTTGGCTACATAGTTCCAAAGCAGCCAGTGAGCCTCTACCTTAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTGGCTACATAGTTCCAAAGCAGCCAGTGAGCCTCTACCTTAAAA  900

seq1  GATGAAATATATATATATATCACATGAGAGCAAAATCTACACAAAGAATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAATATATATATATATCACATGAGAGCAAAATCTACACAAAGAATC  950

seq1  CACCTTCCCAGTGTGGGGGCTGCCTCCCATATTC-TTTTGATCCCTCCCA  999
      ||||||||||||||||||||||||| |||||||| |||||||||||||||
seq2  CACCTTCCCAGTGTGGGGGCTGCCT-CCATATTCTTTTTGATCCCTCCCA  999

seq1  CAAGTCCAGTGAGGGGCTCCCAGCTTACGAAGGCCTCGGAATACATCTCC  1049
      ||||||||||||||||||||||||||||||    ||||||||||||||| 
seq2  CAAGTCCAGTGAGGGGCTCCCAGCTTACGA---GCTCGGAATACATCTCT  1046

seq1  TTCAGCATCAGCAAGAGTCTTCCCTTGTTCCAGTGTGATTAACCTGGCAA  1099
      |||||||||||| ||||||||||| |||  |||||||||  | ||| || 
seq2  TTCAGCATCAGC-AGAGTCTTCCC-TGT--CAGTGTGAT--AGCTGCCAT  1090

seq1  TTTCTTTCTACAAAGAAAACATAT  1123
      ||  ||||||||    ||||||||
seq2  TTCTTTTCTACA---GAAACATAT  1111