BAC Information

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BAC

Clone NameB6Ng01-240K03
Chromosome12 (Build37)
Map Location 101,273,312 - 101,333,027
singlet/doubletdoublet
Overlap geneKcnk13
Upstream geneEG667779, Ches1, LOC100039892, 2610021K21Rik, Tdp1, LOC100040041
Downstream genePsmc1, BC002230, Calm1, Ttc7b, Rps6ka5, LOC100040123, 9030617O03Rik, EG667148, Gpr68, 0610010D24Rik, LOC100040184, Smek1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240K03.bB6Ng01-240K03.g
ACCGA050753GA050754
length9071,178
definitionB6Ng01-240K03.b B6Ng01-240K03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,273,312 - 101,273,836)(101,331,858 - 101,333,027)
sequence
gaattccaggtttcttaacatttgtttgcttttatttttgttaccacata
gcaattatatatgattgttgcagtataacatttcagtgtgtgtgtatgtg
tgtgtgtgtgtgtgtgagagagagagagagtgagatgtgaccagttagag
taattagcatatgtgaaatctcagacatttatatttcttcatgttaataa
tattcaaagtcatctgagatcctcatttcaaaatctataattgatagagt
catcagccttagttactctgctgtgctttagagcactagagaccattgtc
tcacctacttgcacccttaaccagccttcccccatctcccctttctccat
tctctctcccagctctggaaacaataattccatatttatttctatgagat
cagctcttcagtttgtaccaataagtaaaattatgccacttttgtctttg
tgtacctgtctttaactcaacggggtattcttcagttccacagggcagct
gacaattacagaattcattctttttaagccaatggttctcaacctattgg
tcttgacccctttggggttcaacaatcctttcataggggttgcctattat
atattctgcatatcatatatttatatcacaattcagaactgtagcaaaat
cacagttgtggagtagcaatgaaaataattttctggtggcggggggcacc
acaacatgcagaacagttgtcgcattagaaagatacaaaaccactagctt
aaatgctgctctgttaactgcttcacattattctgcttgttcatttattg
atggacatctacgtcagttcatgcaaaggtctttgtacatacaattcctt
ttcccttgactatacactcagtagtggcacttccaaatgagatcccaccc
tgtttct
gaattccaggccggctgtcatgcccacctggaacccacctgtgggttctc
aggaacatggagtccagttcttaggtttgcacaggaagtgctttaacaca
gagccatctccccagcccaaggttaaacacttcttgaattgctaagtctg
gtaagtgtctgttgacatcaactttatcctccttcgggggcttcttgatt
ggaagggcttaatacagaacaaacaagccattaacagtgctatgctctaa
gctattaataagacattcatgtagatttatttctacaatatcgagtatga
atgcgcctctataattcagaatatgaatcgcccccatctttcctgtctgt
cctctaacaatagtagcaaacgcctctatggagctgagcactgttgagca
aacctctggtgcctctcgtgtgcctctgttgttcttacaaggctttgaaa
gtgtccccattgtaggaagccgccctcacatttgccattataagatggcg
ctgacagctgtgttctaagtggtaaacataatctgcacacgtgcaggggc
agttttcccgccatgtgttctacctttctcgtgatgacaactgggccgat
gggctgcagccaatcagggagtaatacgtcctaggcggaggataattctc
cttaaaagggacggggttttgccattctttctcttgctttcttgttctct
ctctcttgctttcctgttcttgttctttttcttgctttcttgttctctct
ctcttgctttcttgttcttgttctttttcttgctcttgctttcttgttct
tgttctttttcttgctcttgctctcttgctcttgctctctttctcttgct
ttcttgctctcttgctctctggctcctgaagatgtaagcaataaagcttt
gccgcagaagattcccggtttgctgcgtctttcctggccctgtcgtgaac
gcgtgtaagaccccatgcctgttcttatggatcctgaaacacacgtgaca
tagcagtacgtgcagaactaggactcaaacctcagttctctgaccacttt
gagattgggtggccagatgagccaggtcgtgtccaccacgtcctttggtc
ttccaccaattctttccttgagctcaggcctggttcgctcatcagtgcca
atctggcttggggtgacaagtttcctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_101273312_101273836
seq2: B6Ng01-240K03.b_42_566

seq1  GAATTCCAGGTTTCTTAACATTTGTTTGCTTTTATTTTTGTTACCACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTTTCTTAACATTTGTTTGCTTTTATTTTTGTTACCACATA  50

seq1  GCAATTATATATGATTGTTGCAGTATAACATTTCAGTGTGTGTGTATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTATATATGATTGTTGCAGTATAACATTTCAGTGTGTGTGTATGTG  100

seq1  TGTGTGTGTGTGTGTGAGAGAGAGAGAGAGTGAGATGTGACCAGTTAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGAGAGAGAGAGAGAGTGAGATGTGACCAGTTAGAG  150

seq1  TAATTAGCATATGTGAAATCTCAGACATTTATATTTCTTCATGTTAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGCATATGTGAAATCTCAGACATTTATATTTCTTCATGTTAATAA  200

seq1  TATTCAAAGTCATCTGAGATCCTCATTTCAAAATCTATAATTGATAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAAGTCATCTGAGATCCTCATTTCAAAATCTATAATTGATAGAGT  250

seq1  CATCAGCCTTAGTTACTCTGCTGTGCTTTAGAGCACTAGAGACCATTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCCTTAGTTACTCTGCTGTGCTTTAGAGCACTAGAGACCATTGTC  300

seq1  TCACCTACTTGCACCCTTAACCAGCCTTCCCCCATCTCCCCTTTCTCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTACTTGCACCCTTAACCAGCCTTCCCCCATCTCCCCTTTCTCCAT  350

seq1  TCTCTCTCCCAGCTCTGGAAACAATAATTCCATATTTATTTCTATGAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCCCAGCTCTGGAAACAATAATTCCATATTTATTTCTATGAGAT  400

seq1  CAGCTCTTCAGTTTGTACCAATAAGTAAAATTATGCCACTTTTGTCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTTCAGTTTGTACCAATAAGTAAAATTATGCCACTTTTGTCTTTG  450

seq1  TGTACCTGTCTTTAACTCAACGGGGTATTCTTCAGTTCCACAGGGCAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTGTCTTTAACTCAACGGGGTATTCTTCAGTTCCACAGGGCAGCT  500

seq1  GACAATTACAGAATTCATTCTTTTT  525
      |||||||||||||||||||||||||
seq2  GACAATTACAGAATTCATTCTTTTT  525

seq1: chr12_101331858_101333027
seq2: B6Ng01-240K03.g_64_1241 (reverse)

seq1  TAAGG-AACTTGGCACCCC-AGCCAGATT-GCACTGATGAGCG-ACCA-G  45
      ||||| |||||| |||||| ||||||||| ||||||||||||| |||| |
seq2  TAAGGAAACTTGTCACCCCAAGCCAGATTGGCACTGATGAGCGAACCAGG  50

seq1  CCTGAGCCTCCAGGAAGGAATGGTGGGAAGACC-AAGGACGT-GTGGACA  93
      |||||| ||| ||||| |||| |  |||||||| |||||||| |||||||
seq2  CCTGAG-CTCAAGGAAAGAATTGGTGGAAGACCAAAGGACGTGGTGGACA  99

seq1  CGACCCTGGCCTTCATCT-GCCACCC-ATCTCCAAGT-GTCAGGAGACCT  140
      ||| ||||||  |||||| ||||||| ||||| |||| |||| |||| ||
seq2  CGA-CCTGGC--TCATCTGGCCACCCAATCTCAAAGTGGTCA-GAGAACT  145

seq1  GA-GTTTGAGTCCTAGTTCTGCCACGTACTGCTATGTCACGTGTGTTTCA  189
      || |||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAGGTTTGAGTCCTAGTTCTG-CACGTACTGCTATGTCACGTGTGTTTCA  194

seq1  GGATCCATAAG-ACAGGCATGGGGTCTTACACGCGTTCACGACA-GGCCA  237
      ||||||||||| |||||||||||||||||||||||||||||||| |||||
seq2  GGATCCATAAGAACAGGCATGGGGTCTTACACGCGTTCACGACAGGGCCA  244

seq1  GGAAAGACGCAGCAAACC-GGAATCTTCTGCGGCAAAGCTTTATTGCTTA  286
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGAAAGACGCAGCAAACCGGGAATCTTCTGCGGCAAAGCTTTATTGCTTA  294

seq1  CATCTTCAGGAGCCAGAGAGCAAGAGAGCAAGAAAGCAAGAGAAAGAGAG  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCAGGAGCCAGAGAGCAAGAGAGCAAGAAAGCAAGAGAAAGAGAG  344

seq1  CAAGAGCAAGAGAGCAAGAGCAAGAAAAAGAACAAGAACAAGAAAGCAAG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCAAGAGAGCAAGAGCAAGAAAAAGAACAAGAACAAGAAAGCAAG  394

seq1  AGCAAGAAAAAGAACAAGAACAAGAAAGCAAGAGAGAGAGAACAAGAAAG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAAAAAGAACAAGAACAAGAAAGCAAGAGAGAGAGAACAAGAAAG  444

seq1  CAAGAAAAAGAACAAGAACAGGAAAGCAAGAGAGAGAGAACAAGAAAGCA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAAAGAACAAGAACAGGAAAGCAAGAGAGAGAGAACAAGAAAGCA  494

seq1  AGAGAAAGAATGGCAAAACCCCGTCCCTTTTAAGGAGAATTATCCTCCGC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGAATGGCAAAACCCCGTCCCTTTTAAGGAGAATTATCCTCCGC  544

seq1  CTAGGACGTATTACTCCCTGATTGGCTGCAGCCCATCGGCCCAGTTGTCA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACGTATTACTCCCTGATTGGCTGCAGCCCATCGGCCCAGTTGTCA  594

seq1  TCACGAGAAAGGTAGAACACATGGCGGGAAAACTGCCCCTGCACGTGTGC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGAGAAAGGTAGAACACATGGCGGGAAAACTGCCCCTGCACGTGTGC  644

seq1  AGATTATGTTTACCACTTAGAACACAGCTGTCAGCGCCATCTTATAATGG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATGTTTACCACTTAGAACACAGCTGTCAGCGCCATCTTATAATGG  694

seq1  CAAATGTGAGGGCGGCTTCCTACAATGGGGACACTTTCAAAGCCTTGTAA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTGAGGGCGGCTTCCTACAATGGGGACACTTTCAAAGCCTTGTAA  744

seq1  GAACAACAGAGGCACACGAGAGGCACCAGAGGTTTGCTCAACAGTGCTCA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACAGAGGCACACGAGAGGCACCAGAGGTTTGCTCAACAGTGCTCA  794

seq1  GCTCCATAGAGGCGTTTGCTACTATTGTTAGAGGACAGACAGGAAAGATG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCATAGAGGCGTTTGCTACTATTGTTAGAGGACAGACAGGAAAGATG  844

seq1  GGGGCGATTCATATTCTGAATTATAGAGGCGCATTCATACTCGATATTGT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGATTCATATTCTGAATTATAGAGGCGCATTCATACTCGATATTGT  894

seq1  AGAAATAAATCTACATGAATGTCTTATTAATAGCTTAGAGCATAGCACTG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAATCTACATGAATGTCTTATTAATAGCTTAGAGCATAGCACTG  944

seq1  TTAATGGCTTGTTTGTTCTGTATTAAGCCCTTCCAATCAAGAAGCCCCCG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGCTTGTTTGTTCTGTATTAAGCCCTTCCAATCAAGAAGCCCCCG  994

seq1  AAGGAGGATAAAGTTGATGTCAACAGACACTTACCAGACTTAGCAATTCA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGATAAAGTTGATGTCAACAGACACTTACCAGACTTAGCAATTCA  1044

seq1  AGAAGTGTTTAACCTTGGGCTGGGGAGATGGCTCTGTGTTAAAGCACTTC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGTTTAACCTTGGGCTGGGGAGATGGCTCTGTGTTAAAGCACTTC  1094

seq1  CTGTGCAAACCTAAGAACTGGACTCCATGTTCCTGAGAACCCACAGGTGG  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAAACCTAAGAACTGGACTCCATGTTCCTGAGAACCCACAGGTGG  1144

seq1  GTTCCAGGTGGGCATGACAGCCGGCCTGGAATTC  1170
      ||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGTGGGCATGACAGCCGGCCTGGAATTC  1178