BAC Information

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BAC

Clone NameB6Ng01-240M16
Chromosome12 (Build37)
Map Location 68,526,000 - 68,527,155
singlet/doubletsinglet
Overlap genenone
Upstream geneMdga2
Downstream geneLOC100040745, LOC100040681
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240M16.bB6Ng01-240M16.g
ACCGA050868GA050869
length1,1931,151
definitionB6Ng01-240M16.b B6Ng01-240M16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccactcttagctgaagggttactggcagttgatcactgttaacg
aattgtcagtttttccttacggggtgtgggttcagaaagcttaccaatga
gaccgtaggtggatctattcctaggcacatacatgtaccactaagtggat
gctatattcaaaaagcacacaaagttaagaaggaaaagcggcaaatacga
tagaagaggaattggaagggggaaaaggtgataaacatgataaaaatgta
ttatatataagtatgaaattttcaaacacaaaattatttattagagggac
tatatttaaaaaaataatagttttgtaaggaaactctttagaaaatggca
agctcgttgataagagaaccagaggaacaagttaatgctgatttttttct
tctagaaatgtcagaagatacactcaaaagtctcatcagcattttcccat
gaccatagcctgaacaagacagcaacaatctatgtggccaagtggatgga
gtgtgtggtcggtgagggaacgccactaggactaaacaataaaaaataaa
aattgggctctttcagttgcttgttggatcttttcgagggcagtcatgac
agattcctttttatgagcactcagtaatagtggcaggccttcggacctcc
tcttgagctggattccactttgggcctgtcactggaccttcttttcctta
ggttcctctccatttccatccctgtaattctttcagacaggaacaattat
tggtcagaggtgtgactgtgggatggcaacccattccctcacttaatgtc
ctatctcctgctggagatgggctctataagttccctctccctattgttgg
gcatttcatctaaggtcccttccctttgagtcctgggagtctctcacctc
ccagatctctggtacattttgggaaggtcctcccaacctcctattcctaa
ggttgcctgtttccattctttcttgctggacctcagggcttcagtacttt
tccctcacccaataccccatcagttccctatcccattccacttgcccctg
ccctttccacttcttccttccaggttcccttcccttccctaccttggtta
tggttcctttctcctcccgagtggactgagccaatctaacttgtacctca
gcttgtgatcattgattctgatgaacgttatccttgtatgata

gaattcactatgcctctgcaatagtttgaagtagtaccttggctttataa
ataaatgatgctatcatgaatggaatataaggtacctttagaattttgaa
cttaatacatacaaaactgcgcatcaatagacaatttaggcaaagcttta
aatttttattttgtgtatgattatttcagactttactaaaatataggagt
cctctaaggttcttacattcctgatgtagaagaaaaacaaaaaaggaaac
tgcaatgactgtaggtcaacacatcctaacctaatgacaaacgtgtctta
cataacacagttagcacggattagattgcagagagtcttttttaaaaaat
atgtccaaagtagatcatatgaaatcttcagtaaataaataaaatgttgc
tttaaaaaagaggaaaccagaagaaaatcattgtggaaagtttggttaag
atgctatttcatttgtacagtttagaaatgggaagtactgacaagaggtt
gagttaatatgtacgtgtactgggggaaaaaaaaaaagcctagacagatt
tggaagcaaaattgattggaccgggtattattacttaagttgatcatgat
ataggagaaaaaaaataggatgttttaatggaaagctactttaagcagtt
gagtcactgaggagatggactgatgagagcaaaactgtgtgtggttagaa
attcagtcacaagtttacatttgaaatactgtgcagcatcccgttaggat
gaaggtatagctggttatatggattttaacttataatgtgttgtcttgac
ttataaaattcaaagtcctctattcacaggtaaagattagaagcagaaag
gcagtatgatcatttagaaaataatataaatgtaaaaattagagaaaatg
gcttaattagtaatacttgaattggaatcactgagttgtttttctgtacg
taaatattcagctttcaggctttggaatcatacagttctctgtcacatcc
gaaacttttaagaattggtaagcaaactgggctcagacactacataataa
tgaagcatgggtgtgctccaataaaacttacaaacctggaaaacaacacc
tctcttggactgggcctcaatgatatatggataggtcctgaacctcaatg
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_68526000_68527155
seq2: B6Ng01-240M16.g_71_1221

seq1  GAATTCACTATGCCTCTGCAATAGTTTGAAGTAGTACCTTGGCTTTATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGCCTCTGCAATAGTTTGAAGTAGTACCTTGGCTTTATAA  50

seq1  ATAAATGATGCTATCATGAATGGAATATAAGGTACCTTTAGAATTTTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGATGCTATCATGAATGGAATATAAGGTACCTTTAGAATTTTGAA  100

seq1  CTTAATACATACAAAACTGCGCATCAATAGACAATTTAGGCAAAGCTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATACATACAAAACTGCGCATCAATAGACAATTTAGGCAAAGCTTTA  150

seq1  AATTTTTATTTTGTGTATGATTATTTCAGACTTTACTAAAATATAGGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATTTTGTGTATGATTATTTCAGACTTTACTAAAATATAGGAGT  200

seq1  CCTCTAAGGTTCTTACATTCCTGATGTAGAAGAAAAACAAAAAAGGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAAGGTTCTTACATTCCTGATGTAGAAGAAAAACAAAAAAGGAAAC  250

seq1  TGCAATGACTGTAGGTCAACACATCCTAACCTAATGACAAACGTGTCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGACTGTAGGTCAACACATCCTAACCTAATGACAAACGTGTCTTA  300

seq1  CATAACACAGTTAGCACGGATTAGATTGCAGAGAGTCTTTTTTAAAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACACAGTTAGCACGGATTAGATTGCAGAGAGTCTTTTTTAAAAAAT  350

seq1  ATGTCCAAAGTAGATCATATGAAATCTTCAGTAAATAAATAAAATGTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCAAAGTAGATCATATGAAATCTTCAGTAAATAAATAAAATGTTGC  400

seq1  TTTAAAAAAGAGGAAACCAGAAGAAAATCATTGTGGAAAGTTTGGTTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAAGAGGAAACCAGAAGAAAATCATTGTGGAAAGTTTGGTTAAG  450

seq1  ATGCTATTTCATTTGTACAGTTTAGAAATGGGAAGTACTGACAAGAGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATTTCATTTGTACAGTTTAGAAATGGGAAGTACTGACAAGAGGTT  500

seq1  GAGTTAATATGTACGTGTACTGGGGGAAAAAAAAAAAGCCTAGACAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAATATGTACGTGTACTGGGGGAAAAAAAAAAAGCCTAGACAGATT  550

seq1  TGGAAGCAAAATTGATTGGACCGGGTATTATTACTTAAGTTGATCATGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCAAAATTGATTGGACCGGGTATTATTACTTAAGTTGATCATGAT  600

seq1  ATAGGAGAAAAAAAATAGGATGTTTTAATGGAAAGCTACTTTAAGCAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGAAAAAAAATAGGATGTTTTAATGGAAAGCTACTTTAAGCAGTT  650

seq1  GAGTCACTGAGGAGATGGACTGATGAGAGCAAAACTGTGTGTGGTTAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACTGAGGAGATGGACTGATGAGAGCAAAACTGTGTGTGGTTAGAA  700

seq1  ATTCAGTCACAAGTTTACATTTGAAATACTGTGCAGCATCCCGTTAGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTCACAAGTTTACATTTGAAATACTGTGCAGCATCCCGTTAGGAT  750

seq1  GAAGGTATAGCTGGTTATATGGATTTTAACTTATAATGTGTTGTCTTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTATAGCTGGTTATATGGATTTTAACTTATAATGTGTTGTCTTGAC  800

seq1  TTATAAAATTCAAAGTCCTCTATTCACAGGTAAAGATTAGAAGCAGAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAATTCAAAGTCCTCTATTCACAGGTAAAGATTAGAAGCAGAAAG  850

seq1  GCAGTATGATCATTTAGAAAATAATATAAATGTAAAAATTAGAGAAAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATGATCATTTAGAAAATAATATAAATGTAAAAATTAGAGAAAATG  900

seq1  GCTTAATTAGTAATACTTGAATTGGAATCACTGAGTTGTTTTTCTGTACG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAATTAGTAATACTTGAATTGGAATCACTGAGTTGTTTTTCTGTACG  950

seq1  TAAATATTTCAGCCTTCAGGCTTTGGAATCATTACAG-TCTCTGTCACAT  999
      |||||| |||||| ||||||||||||||||| ||||| ||||||||||||
seq2  TAAATA-TTCAGCTTTCAGGCTTTGGAATCA-TACAGTTCTCTGTCACAT  998

seq1  CCGAAACTTTT-AGATTTGTAAGGCAAACTTGGCTCCAGACACTACATTA  1048
      ||||||||||| ||| |||  | ||||||| |||| ||||||||||| ||
seq2  CCGAAACTTTTAAGAATTGGTAAGCAAACTGGGCT-CAGACACTACA-TA  1046

seq1  ATAAATGAGCATGGGTGTGCTCCAATAAAACTTACAAACCTGAGAACAC-  1097
      ||||   ||||||||||||||||||||||||||||||||||| ||| || 
seq2  ATAATGAAGCATGGGTGTGCTCCAATAAAACTTACAAACCTG-GAAAACA  1095

seq1  ACA-CTCTCTTTGACTTGTCCTCAATGATTATTTATTGATAAGTCACTGA  1146
      ||| ||||||| |||| | ||||||||   || ||| |||| ||| ||||
seq2  ACACCTCTCTTGGACTGGGCCTCAATG---ATATATGGATAGGTC-CTGA  1141

seq1  ACCTCAATGA  1156
      ||||||||||
seq2  ACCTCAATGA  1151


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