BAC Information

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BAC

Clone NameB6Ng01-240N08
Chromosome12 (Build37)
Map Location 63,193,394 - 63,383,200
singlet/doubletdoublet
Overlap geneLOC665713, LOC622746
Upstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699, LOC665707, LOC100040403
Downstream geneLOC100040438, 1700047L15Rik, Tspyl-ps, EG665741, EG382606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240N08.bB6Ng01-240N08.g
ACCGA050900GA050901
length957982
definitionB6Ng01-240N08.b B6Ng01-240N08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,193,394 - 63,194,346)(63,382,676 - 63,383,200)
sequence
gaattctcaactgagtaatactgaatgactgagaaccacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcatatcaaaacaaccttgagat
tccacctcatatcagtcagaatggcttagatctttatacatttttatatt
agccctctattggatgtagggttagtgacgatcttcaatacttccttgtg
gtgaaacatttatccttctttaaaattttgagatatatacatatatattg
tatgtgcacatgttatattttattaaatgtaattttattataataaagtt
catgtttctccataatttttagttatgcatttttatgtatcacccttagt
gttctgtgtagtaaaccatgtgtgtttgtttctcctgtctataataaact
acaaaaccaacagctaacatctgtgttttcttcaataaactcctccactt
ataataaccactattctattcagtgtcctgcattaacttgtcttttatta
ataccaaacattgacttttacttcctggctgatttagtctagcacaatct
ccatcaaattgatctcttgtcccaaataacctaattcctcttgcttcaag
gctgactattatgcatgcatgctttcttaaaaattatctgtgataaatat
gtaagtatgatatgtatcttagctgttggatatttctagagactttaatt
ttctctagattggtcaattttgaagtagaagtatgtaaagtattttaatt
atttatagtgctctacaagttatagtattttgctcttccctttgattcca
tttgtattttttctcttccttttctcagtatcctctaggcttgttgattt
tttttttcatcctttcaagttagcaactcttaacttttatttatcttttt
tactctatttctattctgggtttcatcttttcttagtcttgtgaataata
tctttaa

gaattccttcctcccatgacatcatatctactaaagcttctatgtttcac
aatgaggtagtcaactgaaaattcagttttcaacacaggatccaactact
ctacaacggttgttaataatgagaagaaagttaagttagaaaattaaatt
aatattcctcagtcaacaagagacaaaagaattgatgtttcaggtaaaca
ttttaaaatcattgaagatgagccattccacccagtccttggtactgggg
cagacccctagttcatctgatcccataaagactccgtatcctgatccatc
ctagaggacctgctgcactcagagcagttggtataaaatgactcactgat
cccagtcccagagctgtgtctgggagcctagtggactcaggactcatcac
ccatcaaaccacctgccctcccaaataccacacctcttccatctcttcca
atccttccccccctggtccttgctgctagggcagactcctagttggtcag
ctcctgtgaacactccatatcccaatccatcctagaggacctaatgcact
cagtgtagttggacccacggtaatcacagcagttgagaagttgaggactc
tctgcactcagaacaattgaggatcagcttcactcaaagcaattggataa
cagcttgattgctccactgaagacccaacagtctgaaggcctccgaagat
atctactgcagccaggacaacagatcagcagcttctctgcccctgtgaag
atctcccagttggaaggccacaaaagtggtatgatccagccagggcagca
gtctacctggagacctaaagcaacctaggaccaaaataaacagactgcat
acagtcacccagaccaacaaacaccaggggttattcagatggcaaaaggc
aagcacaagaccataagcaacagaagcccaaaatacgtggacatcatcag
aacccagttctttcacccacagaaagtcctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_63193394_63194346
seq2: B6Ng01-240N08.b_50_1006

seq1  GAATTCTCAACTGAGTAATACTGAATGACTGAGAACCACCTGAAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACTGAGTAATACTGAATGACTGAGAACCACCTGAAAAAATG  50

seq1  TTCAACATCCTTAATCATCAGGGAAATGCATATCAAAACAACCTTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATCCTTAATCATCAGGGAAATGCATATCAAAACAACCTTGAGAT  100

seq1  TCCACCTCATATCAGTCAGAATGGCTTAGATCTTTATACATTTTTATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCATATCAGTCAGAATGGCTTAGATCTTTATACATTTTTATATT  150

seq1  AGCCCTCTATTGGATGTAGGGTTAGTGACGATCTTCAATACTTCCTTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCTATTGGATGTAGGGTTAGTGACGATCTTCAATACTTCCTTGTG  200

seq1  GTGAAACATTTATCCTTCTTTAAAATTTTGAGATATATACATATATATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACATTTATCCTTCTTTAAAATTTTGAGATATATACATATATATTG  250

seq1  TATGTGCACATGTTATATTTTATTAAATGTAATTTTATTATAATAAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCACATGTTATATTTTATTAAATGTAATTTTATTATAATAAAGTT  300

seq1  CATGTTTCTCCATAATTTTTAGTTATGCATTTTTATGTATCACCCTTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTCTCCATAATTTTTAGTTATGCATTTTTATGTATCACCCTTAGT  350

seq1  GTTCTGTGTAGTAAACCATGTGTGTTTGTTTCTCCTGTCTATAATAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTGTAGTAAACCATGTGTGTTTGTTTCTCCTGTCTATAATAAACT  400

seq1  ACAAAACCAACAGCTAACATCTGTGTTTTCTTCAATAAACTCCTCCACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACCAACAGCTAACATCTGTGTTTTCTTCAATAAACTCCTCCACTT  450

seq1  ATAATAACCACTATTCTATTCAGTGTCCTGCATTAACTTGTCTTTTATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAACCACTATTCTATTCAGTGTCCTGCATTAACTTGTCTTTTATTA  500

seq1  ATACCAAACATTGACTTTTACTTCCTGGCTGATTTAGTCTAGCACAATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAACATTGACTTTTACTTCCTGGCTGATTTAGTCTAGCACAATCT  550

seq1  CCATCAAATTGATCTCTTGTCCCAAATAACCTAATTCCTCTTGCTTCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAAATTGATCTCTTGTCCCAAATAACCTAATTCCTCTTGCTTCAAG  600

seq1  GCTGACTATTATGCATGCATGCTTTCTTAAAAATTATCTGTGATAAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTATTATGCATGCATGCTTTCTTAAAAATTATCTGTGATAAATAT  650

seq1  GTAAGTATGATATGTATCTTAGCTGTTGGATATTTCTAGAGACTTTAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTATGATATGTATCTTAGCTGTTGGATATTTCTAGAGACTTTAATT  700

seq1  TTCTCTAGATTGGTCAATTTTGAAGTAGAAGTATGTAAAGTATTTTAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAGATTGGTCAATTTTGAAGTAGAAGTATGTAAAGTATTTTAATT  750

seq1  ATTTATAGTGCTCTACAAGTTATAGTA-TTTGCTCTTCCCTTTGATTCCA  799
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATTTATAGTGCTCTACAAGTTATAGTATTTTGCTCTTCCCTTTGATTCCA  800

seq1  TTTGTATTTTTTCTCTTCCTTTTCTCAGTATCCTCTAGGCTTGTTGA-TT  848
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTGTATTTTTTCTCTTCCTTTTCTCAGTATCCTCTAGGCTTGTTGATTT  850

seq1  TTTTTTTCATCCTTTCAAGTTAGCAACTCTTAAC-TTTATTTATC-TTTT  896
      |||||||||||||||||||||||||||||||||| |||||||||| ||||
seq2  TTTTTTTCATCCTTTCAAGTTAGCAACTCTTAACTTTTATTTATCTTTTT  900

seq1  TACTCTATTTCTAATTCT-GGTTTCATCTTTTCTTAGTCTTGTTAATAAT  945
      |||||||||||| ||||| |||||||||||||||||||||||| ||||||
seq2  TACTCTATTTCT-ATTCTGGGTTTCATCTTTTCTTAGTCTTGTGAATAAT  949

seq1  TTCTTTTA  953
       ||||| |
seq2  ATCTTTAA  957


seq1: chr12_63382676_63383200
seq2: B6Ng01-240N08.g_67_591 (reverse)

seq1  TTGGGATATGGAGTGTTCACAGGAGCTGACCAACTAGGAGTCTGCCCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATATGGAGTGTTCACAGGAGCTGACCAACTAGGAGTCTGCCCTAG  50

seq1  CAGCAAGGACCAGGGGGGGAAGGATTGGAAGAGATGGAAGAGGTGTGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGGACCAGGGGGGGAAGGATTGGAAGAGATGGAAGAGGTGTGGTA  100

seq1  TTTGGGAGGGCAGGTGGTTTGATGGGTGATGAGTCCTGAGTCCACTAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGAGGGCAGGTGGTTTGATGGGTGATGAGTCCTGAGTCCACTAGGC  150

seq1  TCCCAGACACAGCTCTGGGACTGGGATCAGTGAGTCATTTTATACCAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGACACAGCTCTGGGACTGGGATCAGTGAGTCATTTTATACCAACT  200

seq1  GCTCTGAGTGCAGCAGGTCCTCTAGGATGGATCAGGATACGGAGTCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGAGTGCAGCAGGTCCTCTAGGATGGATCAGGATACGGAGTCTTTA  250

seq1  TGGGATCAGATGAACTAGGGGTCTGCCCCAGTACCAAGGACTGGGTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCAGATGAACTAGGGGTCTGCCCCAGTACCAAGGACTGGGTGGAA  300

seq1  TGGCTCATCTTCAATGATTTTAAAATGTTTACCTGAAACATCAATTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCATCTTCAATGATTTTAAAATGTTTACCTGAAACATCAATTCTTT  350

seq1  TGTCTCTTGTTGACTGAGGAATATTAATTTAATTTTCTAACTTAACTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTGTTGACTGAGGAATATTAATTTAATTTTCTAACTTAACTTTC  400

seq1  TTCTCATTATTAACAACCGTTGTAGAGTAGTTGGATCCTGTGTTGAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATTATTAACAACCGTTGTAGAGTAGTTGGATCCTGTGTTGAAAAC  450

seq1  TGAATTTTCAGTTGACTACCTCATTGTGAAACATAGAAGCTTTAGTAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTCAGTTGACTACCTCATTGTGAAACATAGAAGCTTTAGTAGAT  500

seq1  ATGATGTCATGGGAGGAAGGAATTC  525
      |||||||||||||||||||||||||
seq2  ATGATGTCATGGGAGGAAGGAATTC  525


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