BAC Information

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BAC

Clone NameB6Ng01-241G15
Chromosome12 (Build37)
Map Location 57,939,816 - 58,121,808
singlet/doubletdoublet
Overlap geneSlc25a21
Upstream geneBrms1l, LOC100039915, LOC382600, LOC382601, Mbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9
Downstream geneAU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241G15.bB6Ng01-241G15.g
ACCGA051333GA051334
length1,0361,150
definitionB6Ng01-241G15.b B6Ng01-241G15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,939,816 - 57,940,630)(58,120,678 - 58,121,808)
sequence
gaattcattgtttttaattgctgagtagtactccattgtgcaaatgtacc
acattttctgtatctattcctctgttgagggacatctgggttctttccag
ctcctgactattataaataaggctgctatgaacatagtggagcatgtgtc
cttattacaagttggaacatcttctgggtatatgcccaggagaggaattg
ctggatctcccagtagtactatgtccaattttctgaggagccaccacact
gatttccagagtggttgtacaagcttgcaatcccaccaataatggagaag
tgtccctcttactccacatcctcgccaacatctgctgtcacctgaatttt
tgatctgactggtgtgagatggaatctcagggttgttttgatttgcattt
ccctgatgattaaggatgttgaacattttttcaggtgcttctcagccctt
tggtattccttagttgagaattctttgtttaacactgtaccccattttta
atagggttatttgattttctggagtccatcttcttgagttctttatatat
atttgatattagtcccctatctgatttaggattggtaaagatcctttccc
aatctgttagaagcctttttgtctaattgacaatgtcttttgccttatag
aagctttgcaattttatgaggtcccattcgtcaattctagatcttacaga
acaagccactgctgttctgttcaggaattttttttaatatttgttttgat
ttgattctattttctatatgaggacagcttgactgtatatgtatggttat
gaaatttagcaatatttccactttgaatggtgacagcatcaaagtggagt
aacagaaatgtggcattaattttctcttgtttttttttctcatttttttt
gtttgtttgtttttgagaaagattctctgtgtagatgtagctgtcctgac
tcactctgtagactagctggtctcaaatctgagatcccctggctatgcct
cccaagttctgggattaaagtgcatgcatctgtctg
gaattctttggtttgtgtgcataagcccagtagaaaccaggctcctgtgt
tgtgatggttgaatactattgagtactaatgtggtagttttgtgcatgga
tgctcattccctaaggagggttctgagtgggagtgaagctgcgagtgtca
tgcattggtcacttctatgtcttctgtgattcataaccttcagttgtgct
acattttgaaacaacttcctcttggcataaagtcgtaaagtttaaaggtt
ctaagaattggttctgaagttcattttggtgctgaaatgttattgttacc
cacaaataataatctcatatcataacagacactgtgcttttacattattt
gatttttgggagtactgtcatcaggagatcattggaacaagcaccaaaaa
caatgtttatacacaaccccaaaaaagacagatcagtgaattttaaaaga
ataaattcaggcattacatccataagtctgtgcactagagtggcccaaat
attcacttcactagtcagtctgtacagaccctgcctgcatcttattgaat
aaccataaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaac
aaaacaaaacaaaaccctatacttcttgaatggtctcattccataagcca
cagagcatgtcccaagactcagggtttgcctagatctgagggtacattca
gaggatgccctgtctccgcccttcagggttttatagtctttctacaggaa
atatttttgtttgactgagaactagcttctggcagcaaactggggagtgt
gttttaacttcagtttgagtctctgtgatctcagagttgctgcgacagct
ctgctctgcaggatcttttctcctgaacagagttattcctcgtttcatct
ctgcagaaaaatgagtcagaggatggaggagcgctgtatttcatttacac
ataaagggttaaaaggtagggtctggaggatatgaattattggtgtggat
ctgtcatttctttagctacctaaaaggttgtttaggacatgtatgaagtt
aaaaatattatctcagcttggtattagattactttattaagcttttctat
atcattgaacctgtaattttttggctgactatttctattttactaatata

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_57939816_57940630
seq2: B6Ng01-241G15.b_277_1079

seq1  TGAGGAGCCACCACACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGCCACCACACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCC  50

seq1  CACCAATAATGGAGAAGTGTCCCTCTTACTCCACATCCTCGCCAACATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATAATGGAGAAGTGTCCCTCTTACTCCACATCCTCGCCAACATCT  100

seq1  GCTGTCACCTGAATTTTTGATCTGACTGGTGTGAGATGGAATCTCAGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCACCTGAATTTTTGATCTGACTGGTGTGAGATGGAATCTCAGGGT  150

seq1  TGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCA  200

seq1  GGTGCTTCTCAGCCCTTTGGTATTCCTTAGTTGAGAATTCTTTGTTTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTCTCAGCCCTTTGGTATTCCTTAGTTGAGAATTCTTTGTTTAAC  250

seq1  ACTGTACCCCATTTTTAATAGGGTTATTTGATTTTCTGGAGTCCATCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACCCCATTTTTAATAGGGTTATTTGATTTTCTGGAGTCCATCTTC  300

seq1  TTGAGTTCTTTATATATATTTGATATTAGTCCCCTATCTGATTTAGGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTCTTTATATATATTTGATATTAGTCCCCTATCTGATTTAGGATT  350

seq1  GGTAAAGATCCTTTCCCAATCTGTTAGAAGCCTTTTTGTCTAATTGACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGATCCTTTCCCAATCTGTTAGAAGCCTTTTTGTCTAATTGACAA  400

seq1  TGTCTTTTGCCTTATAGAAGCTTTGCAATTTTATGAGGTCCCATTCGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTGCCTTATAGAAGCTTTGCAATTTTATGAGGTCCCATTCGTCA  450

seq1  ATTCTAGATCTTACAGAACAAGCCACTGCTGTTCTGTTCAGGAATTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGATCTTACAGAACAAGCCACTGCTGTTCTGTTCAGGAATTTTTT  500

seq1  TTAATATTTGTTTTGATTTGATTCTATTTTCTATATGAGGACAGCTTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTTGTTTTGATTTGATTCTATTTTCTATATGAGGACAGCTTGAC  550

seq1  TGTATATGTATGGTTATGAAATTTAGCAATATTTCCACTTTGAATGGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGTATGGTTATGAAATTTAGCAATATTTCCACTTTGAATGGTGA  600

seq1  CAGCATCAAAGTGGAGTAACAGAAATGTGGCATTAATTTTCTCTTGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCAAAGTGGAGTAACAGAAATGTGGCATTAATTTTCTCTTGTTTT  650

seq1  TTTTTCTCATTTTTTTTGTTTTGTTTTGTTTTTTGAGAAAAGATTTCTCT  700
      |||||||||||||||||| |||||||   |||||||| ||||| ||||||
seq2  TTTTTCTCATTTTTTTTG-TTTGTTT--GTTTTTGAG-AAAGA-TTCTCT  695

seq1  GTGTAGATGTAGCTGTCCTGGAACTCACTCTGTAGACTAGGCTGGTCTCA  750
      ||||||||||||||||||||  ||||||||||||||||| ||||||||| 
seq2  GTGTAGATGTAGCTGTCCTG--ACTCACTCTGTAGACTA-GCTGGTCTC-  741

seq1  AAATCTGAGATCCCCTGGCCTATGCCTCCCAAGTTCTGGGATTAAAAGTG  800
      |||||||||||||||||| |||||||||||||||||||||||| ||||||
seq2  AAATCTGAGATCCCCTGG-CTATGCCTCCCAAGTTCTGGGATT-AAAGTG  789

seq1  CATGCCATCTGTCTG  815
      |||| ||||||||||
seq2  CATG-CATCTGTCTG  803

seq1: chr12_58120678_58121808
seq2: B6Ng01-241G15.g_65_1214 (reverse)

seq1  TATATTAG-AAAATA-----AGTCAGCC-AAAAATAACA-GTTCATTAAT  42
      |||||||| ||||||     |||||||| |||||| ||| ||||| | ||
seq2  TATATTAGTAAAATAGAAATAGTCAGCCAAAAAATTACAGGTTCAATGAT  50

seq1  ATAGAAAA-CT--ATAAAGTAATCTAAATAACCAGCTGAGATAATATTTT  89
      |||||||| ||  |||||||||||| |||| | |||||||||||||||||
seq2  ATAGAAAAGCTTAATAAAGTAATCT-AATACCAAGCTGAGATAATATTTT  99

seq1  TAAACTTTTCATACATTGTCTAAACAA-CTTTTAGTTAGCTAAAGAAATG  138
      |||    |||||||||   |||||||| ||||||| ||||||||||||||
seq2  TAA---CTTCATACATGTCCTAAACAACCTTTTAGGTAGCTAAAGAAATG  146

seq1  ACAGAT-CACA-CAATAATTCATATCCTCCAGACCCTA-CTTTTAA-CCT  184
      |||||| |||| |||||||||||||||||||||||||| ||||||| |||
seq2  ACAGATCCACACCAATAATTCATATCCTCCAGACCCTACCTTTTAACCCT  196

seq1  TTATGTGTAAATGAAATACAGCGCTC--TCAT-CTCTGACTCA-TTTTCT  230
      ||||||||||||||||||||||||||   ||| |||||||||| ||||||
seq2  TTATGTGTAAATGAAATACAGCGCTCCTCCATCCTCTGACTCATTTTTCT  246

seq1  GCAGAGATG-AACGAGGAAT-ACTCTGTTCAGGAGAAAAGAT-CTGCAGA  277
      ||||||||| |||||||||| ||||||||||||||||||||| |||||||
seq2  GCAGAGATGAAACGAGGAATAACTCTGTTCAGGAGAAAAGATCCTGCAGA  296

seq1  GCAGAGCTGTCGCAGCAACTCTGAGATCACAGAGACTCAAACTGAAGTTA  327
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCTGTCGCAGCAACTCTGAGATCACAGAGACTCAAACTGAAGTTA  346

seq1  AAACACACTCCCCAGTTTGCTGCCAGAAGCTAGTTCTCAGTCAAACAAAA  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACACTCCCCAGTTTGCTGCCAGAAGCTAGTTCTCAGTCAAACAAAA  396

seq1  ATATTTCCTGTAGAAAGACTATAAAACCCTGAAGGGCGGAGACAGGGCAT  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCCTGTAGAAAGACTATAAAACCCTGAAGGGCGGAGACAGGGCAT  446

seq1  CCTCTGAATGTACCCTCAGATCTAGGCAAACCCTGAGTCTTGGGACATGC  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAATGTACCCTCAGATCTAGGCAAACCCTGAGTCTTGGGACATGC  496

seq1  TCTGTGGCTTATGGAATGAGACCATTCAAGAAGTATAGGGTTTTGTTTTG  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGCTTATGGAATGAGACCATTCAAGAAGTATAGGGTTTTGTTTTG  546

seq1  TTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTAT  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTAT  596

seq1  GGTTATTCAATAAGATGCAGGCAGGGTCTGTACAGACTGACTAGTGAAGT  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTCAATAAGATGCAGGCAGGGTCTGTACAGACTGACTAGTGAAGT  646

seq1  GAATATTTGGGCCACTCTAGTGCACAGACTTATGGATGTAATGCCTGAAT  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTTGGGCCACTCTAGTGCACAGACTTATGGATGTAATGCCTGAAT  696

seq1  TTATTCTTTTAAAATTCACTGATCTGTCTTTTTTGGGGTTGTGTATAAAC  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTTTAAAATTCACTGATCTGTCTTTTTTGGGGTTGTGTATAAAC  746

seq1  ATTGTTTTTGGTGCTTGTTCCAATGATCTCCTGATGACAGTACTCCCAAA  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTTGGTGCTTGTTCCAATGATCTCCTGATGACAGTACTCCCAAA  796

seq1  AATCAAATAATGTAAAAGCACAGTGTCTGTTATGATATGAGATTATTATT  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAATAATGTAAAAGCACAGTGTCTGTTATGATATGAGATTATTATT  846

seq1  TGTGGGTAACAATAACATTTCAGCACCAAAATGAACTTCAGAACCAATTC  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTAACAATAACATTTCAGCACCAAAATGAACTTCAGAACCAATTC  896

seq1  TTAGAACCTTTAAACTTTACGACTTTATGCCAAGAGGAAGTTGTTTCAAA  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACCTTTAAACTTTACGACTTTATGCCAAGAGGAAGTTGTTTCAAA  946

seq1  ATGTAGCACAACTGAAGGTTATGAATCACAGAAGACATAGAAGTGACCAA  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCACAACTGAAGGTTATGAATCACAGAAGACATAGAAGTGACCAA  996

seq1  TGCATGACACTCGCAGCTTCACTCCCACTCAGAACCCTCCTTAGGGAATG  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGACACTCGCAGCTTCACTCCCACTCAGAACCCTCCTTAGGGAATG  1046

seq1  AGCATCCATGCACAAAACTACCACATTAGTACTCAATAGTATTCAACCAT  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCATGCACAAAACTACCACATTAGTACTCAATAGTATTCAACCAT  1096

seq1  CACAACACAGGAGCCTGGTTTCTACTGGGCTTATGCACACAAACCAAAGA  1127
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACACAGGAGCCTGGTTTCTACTGGGCTTATGCACACAAACCAAAGA  1146

seq1  ATTC  1131
      ||||
seq2  ATTC  1150