BAC Information

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BAC

Clone NameB6Ng01-241I17
Chromosome12 (Build37)
Map Location 37,372,920 - 37,421,941
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik, LOC638858
Downstream geneMeox2, A530016O06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241I17.bB6Ng01-241I17.g
ACCGA051431GA051432
length1,1421,158
definitionB6Ng01-241I17.b B6Ng01-241I17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,372,920 - 37,374,057)(37,420,779 - 37,421,941)
sequence
gaattcctgattctcctcctggcacccaccaagtcctaaaattacacata
cacacacacacacacacacacacacacacacacacacacactatcttgtc
tagcaaacaataccaaaattataaaaaagcacttttcttgattattgaaa
gaagtgtataggaataaggcatgtttaagtatttctgcccaagatttaaa
ctatatcagtacactggagagtgagaaagggctgtgtaagagtgagttgt
atggcttctctgtggctgtggctctcacagtctgcttcacagaaaagcag
agctgatcatatgtaggtagtgggccagagtggccaggacactgcatttc
tatatcctggttcttcagccaaggtaactccactgaatgatttatttcct
tatgtctctatgtagtgatttgtgtggttaatgcatgtaagaactttctt
cttaaaaccattagcatagtagatttatgaataacttctatggtaattac
acttttatgctgtgcccttagcctttataatattgtcttgagtgcactta
atcaaagtaatagtttgacttgttttaacaaaacccaaaaggacagctgt
atagtgtgctcttaagtgtttccatcactcttagcatatttctgcagctc
atcacagacagtctgctcttgaaaagcattgcaactttcatttgttacca
aaacacaagataaaaatatgccaagtgactgagtcaggcatggtagtgca
ctcctttgatctaccagtcaggagacagaggcaggaagatatctttgagt
tctggccagcctgatttacatagggattcccaggcctgctaagactacat
cgtaagactctgtcttgaaaaacaaaaaatgaacaaacaaacaaaacccc
attttgttaacttttggctgcattggaattatatcctggttactagatgc
atttctctttccaacttcagtgctagtttatcttttttgtatgcaccacc
ttctatgcgctcagcacatacataatattccagtttcaggagaaaaatct
gtccatgtttatctgattatataagctcagtttctatgttttttctctcc
ctgcctcaatatgtatcaaagcatccaggtgtggggagaatt

gaattcttttaccatagagtcctgcatacctccattcagtaaagccaaca
actgaattcctgaagtgggcagttcaacaattttttttttaaactcaggt
gggattaaagaaaatgaatttctattcaaacaggaaaagaaaggggaacc
acaagcttcatgggggtcttaaaaacacacaccggatgggggttattcaa
actattgaaagttaataacacagattaataataaaaacctaaaagggaat
ttgttatccacttagactaaaaaacttaagtgcaaatgaaatatggagtt
ggatgtaaaaactggataaggagaaaaacctgattgtactaataagacaa
ccaatttcaagagcccatttttattatatgcagagaaaaaaaaagtgtaa
cagatccaaatggcagagctccagaaatctctctcattcaacctaccaga
cacatggacagcccctgtcccaataatcagatggtgatgactctttgcag
gagagtagagatagaagattggtcctgtgaagagttctgagtcacgtttc
tttcttgggtcaaaccatcactaagactgtcttttggatgcttctgcctc
taagctcaatgagtttcacaaaatgagaaatgagactgtatccagttaaa
tttaggattatggatgtaaatcagaatttttaaaccccaagtaaagaaca
aatcttcctatttgtgatgccatttgctaaatcctgtctttgtgtagttt
ctagcatccgggatgatcacaaattctccacctctgcatctgctttttca
caactgtcaaatcccaagattgaccacacggacttaacagaaaccctgca
aggattacgaaaggtttaaatgaagaaaaaactgcattagacagggccag
ggcctcatcaatgctgctaagtagagccagatgttttaacaactgttcag
attatttggtagcatcctcattaagtaggagaattaatttaacataattc
attgagctaagcagacatttataaaatcaaggaatcacgtttccatggga
agggaggacatctggtcaatctgttcctccatacaggcctcaccatcact
gccaacattccatgaacaacttggaggagcacacatgatcaagagttgct
tccacagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_37372920_37374057
seq2: B6Ng01-241I17.b_47_1188

seq1  GAATTCCTGATTCTCCTCCTGGCACCCACCAAGTCCTAAAATTACACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATTCTCCTCCTGGCACCCACCAAGTCCTAAAATTACACATA  50

seq1  CACACACACACACACACACACACACACACACACACACACACTATCTTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACTATCTTGTC  100

seq1  TAGCAAACAATACCAAAATTATAAAAAAGCACTTTTCTTGATTATTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAACAATACCAAAATTATAAAAAAGCACTTTTCTTGATTATTGAAA  150

seq1  GAAGTGTATAGGAATAAGGCATGTTTAAGTATTTCTGCCCAAGATTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTATAGGAATAAGGCATGTTTAAGTATTTCTGCCCAAGATTTAAA  200

seq1  CTATATCAGTACACTGGAGAGTGAGAAAGGGCTGTGTAAGAGTGAGTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCAGTACACTGGAGAGTGAGAAAGGGCTGTGTAAGAGTGAGTTGT  250

seq1  ATGGCTTCTCTGTGGCTGTGGCTCTCACAGTCTGCTTCACAGAAAAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTCTCTGTGGCTGTGGCTCTCACAGTCTGCTTCACAGAAAAGCAG  300

seq1  AGCTGATCATATGTAGGTAGTGGGCCAGAGTGGCCAGGACACTGCATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATCATATGTAGGTAGTGGGCCAGAGTGGCCAGGACACTGCATTTC  350

seq1  TATATCCTGGTTCTTCAGCCAAGGTAACTCCACTGAATGATTTATTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCTGGTTCTTCAGCCAAGGTAACTCCACTGAATGATTTATTTCCT  400

seq1  TATGTCTCTATGTAGTGATTTGTGTGGTTAATGCATGTAAGAACTTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTCTATGTAGTGATTTGTGTGGTTAATGCATGTAAGAACTTTCTT  450

seq1  CTTAAAACCATTAGCATAGTAGATTTATGAATAACTTCTATGGTAATTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAACCATTAGCATAGTAGATTTATGAATAACTTCTATGGTAATTAC  500

seq1  ACTTTTATGCTGTGCCCTTAGCCTTTATAATATTGTCTTGAGTGCACTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATGCTGTGCCCTTAGCCTTTATAATATTGTCTTGAGTGCACTTA  550

seq1  ATCAAAGTAATAGTTTGACTTGTTTTAACAAAACCCAAAAGGACAGCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGTAATAGTTTGACTTGTTTTAACAAAACCCAAAAGGACAGCTGT  600

seq1  ATAGTGTGCTCTTAAGTGTTTCCATCACTCTTAGCATATTTCTGCAGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTGCTCTTAAGTGTTTCCATCACTCTTAGCATATTTCTGCAGCTC  650

seq1  ATCACAGACAGTCTGCTCTTGAAAAGCATTGCAACTTTCATTTGTTACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGACAGTCTGCTCTTGAAAAGCATTGCAACTTTCATTTGTTACCA  700

seq1  AAACACAAGATAAAAATATGCCAAGTGACTGAGTCAGGCATGGTAGTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAAGATAAAAATATGCCAAGTGACTGAGTCAGGCATGGTAGTGCA  750

seq1  CTCCTTTGATCTACCAGTCAGGAGACAGAGGCAGGAAGATATCTTTGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTGATCTACCAGTCAGGAGACAGAGGCAGGAAGATATCTTTGAGT  800

seq1  TCTGGCCAGCCTGATTTACATAGGGATTCCCAGGCCTGCTAAGACTACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCAGCCTGATTTACATAGGGATTCCCAGGCCTGCTAAGACTACAT  850

seq1  CGTAAGACTCTGTCTTGAAAAAACAAAAAATGAAACAAAACAAACAAAAC  900
      ||||||||||||||||| ||||||||||||||||   |||||||||||||
seq2  CGTAAGACTCTGTCTTG-AAAAACAAAAAATGAA--CAAACAAACAAAAC  897

seq1  CCCATTTTGTTAACTTTTGGCTGCATTGGAATTATATCCTGGTTACTAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTTGTTAACTTTTGGCTGCATTGGAATTATATCCTGGTTACTAGA  947

seq1  TGCATTTCTCTTTCCAACTTCAGTGCTTAGTTTATCTTTTTTGTATGCA-  999
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  TGCATTTCTCTTTCCAACTTCAGTGC-TAGTTTATCTTTTTTGTATGCAC  996

seq1  CACCTTCTATGCGCTCAGCACATACAT-ATATTCCAGTTCAAGAGAAAAA  1048
      ||||||||||||||||||||||||||| |||||||||||  || || |||
seq2  CACCTTCTATGCGCTCAGCACATACATAATATTCCAGTTTCAG-GAGAAA  1045

seq1  AATCTGTCCAATGTTATCTGATTATAAAAGCTCAGTTTTCATGTTTTTTC  1098
      ||||||||||   ||||||||||||| |||||||||||  ||||||||||
seq2  AATCTGTCCATGTTTATCTGATTATATAAGCTCAGTTTCTATGTTTTTTC  1095

seq1  TC-CCCTG-CTCCATA-GTATCAAAGGCAT-CAG----TGGGAGAATT  1138
      || ||||| ||| ||| |||||||| |||| |||     |||||||||
seq2  TCTCCCTGCCTCAATATGTATCAAA-GCATCCAGGTGTGGGGAGAATT  1142


seq1: chr12_37420779_37421941
seq2: B6Ng01-241I17.g_62_1219 (reverse)

seq1  GCTGTG--AGCAACTCTGAATCATGTGTGCTCCTCCATGTTTGTTCTCAT  48
      ||||||  |||||||||  |||||||||||||||||| | ||||  ||||
seq2  GCTGTGGAAGCAACTCTTGATCATGTGTGCTCCTCCAAG-TTGT--TCAT  47

seq1  GGGAAATGTTTGCAGTGATGGTGAG--CTGTATGGA-GAACAGATTGGAA  95
      ||  |||||| ||||||||||||||  ||||||||| ||||||||||  |
seq2  GG--AATGTTGGCAGTGATGGTGAGGCCTGTATGGAGGAACAGATTG--A  93

seq1  CCAGATTGTTCTTCCCTTCCCATGGGAAACGTTGGATCCTTTGATTTTTA  145
      ||||||   || ||||||||||| ||||||||  ||| | |||| |||||
seq2  CCAGAT--GTCCTCCCTTCCCAT-GGAAACGT--GATTCCTTGA-TTTTA  137

seq1  TAAATGTCTGCTTAGCTCAAATGAATTATG-TAAATTAATTCT-CTACTT  193
      |||||||||||||||||| ||||||||||| |||||||||||| ||||||
seq2  TAAATGTCTGCTTAGCTC-AATGAATTATGTTAAATTAATTCTCCTACTT  186

seq1  AATGAGGATGCTACCAAATAATCTGAACAGTTGTTAAAACATCTGGCTCT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGATGCTACCAAATAATCTGAACAGTTGTTAAAACATCTGGCTCT  236

seq1  ACTTAGCAGCATTGATGAGGCCCTGG-CCTGTCTAATGCAGTTTTTTCTT  292
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACTTAGCAGCATTGATGAGGCCCTGGCCCTGTCTAATGCAGTTTTTTCTT  286

seq1  CATTTAAACC-TTCGTAATCCTTGCAGGGTTTCTGTTAAGTCCGTGTGGT  341
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAACCTTTCGTAATCCTTGCAGGGTTTCTGTTAAGTCCGTGTGGT  336

seq1  CAATCTTGGGATTTGACAGTTGTGAAAAAGCAGATGCAGAGGTGGAGAAT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTGGGATTTGACAGTTGTGAAAAAGCAGATGCAGAGGTGGAGAAT  386

seq1  TTGTGATCATCCCGGATGCTAGAAACTACACAAAGACAGGATTTAGCAAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATCATCCCGGATGCTAGAAACTACACAAAGACAGGATTTAGCAAA  436

seq1  TGGCATCACAAATAGGAAGATTTGTTCTTTACTTGGGGTTTAAAAATTCT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCACAAATAGGAAGATTTGTTCTTTACTTGGGGTTTAAAAATTCT  486

seq1  GATTTACATCCATAATCCTAAATTTAACTGGATACAGTCTCATTTCTCAT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACATCCATAATCCTAAATTTAACTGGATACAGTCTCATTTCTCAT  536

seq1  TTTGTGAAACTCATTGAGCTTAGAGGCAGAAGCATCCAAAAGACAGTCTT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAAACTCATTGAGCTTAGAGGCAGAAGCATCCAAAAGACAGTCTT  586

seq1  AGTGATGGTTTGACCCAAGAAAGAAACGTGACTCAGAACTCTTCACAGGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGGTTTGACCCAAGAAAGAAACGTGACTCAGAACTCTTCACAGGA  636

seq1  CCAATCTTCTATCTCTACTCTCCTGCAAAGAGTCATCACCATCTGATTAT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTTCTATCTCTACTCTCCTGCAAAGAGTCATCACCATCTGATTAT  686

seq1  TGGGACAGGGGCTGTCCATGTGTCTGGTAGGTTGAATGAGAGAGATTTCT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAGGGGCTGTCCATGTGTCTGGTAGGTTGAATGAGAGAGATTTCT  736

seq1  GGAGCTCTGCCATTTGGATCTGTTACACTTTTTTTTTCTCTGCATATAAT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCTGCCATTTGGATCTGTTACACTTTTTTTTTCTCTGCATATAAT  786

seq1  AAAAATGGGCTCTTGAAATTGGTTGTCTTATTAGTACAATCAGGTTTTTC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGGCTCTTGAAATTGGTTGTCTTATTAGTACAATCAGGTTTTTC  836

seq1  TCCTTATCCAGTTTTTACATCCAACTCCATATTTCATTTGCACTTAAGTT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATCCAGTTTTTACATCCAACTCCATATTTCATTTGCACTTAAGTT  886

seq1  TTTTAGTCTAAGTGGATAACAAATTCCCTTTTAGGTTTTTATTATTAATC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTCTAAGTGGATAACAAATTCCCTTTTAGGTTTTTATTATTAATC  936

seq1  TGTGTTATTAACTTTCAATAGTTTGAATAACCCCCATCCGGTGTGTGTTT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTATTAACTTTCAATAGTTTGAATAACCCCCATCCGGTGTGTGTTT  986

seq1  TTAAGACCCCCATGAAGCTTGTGGTTCCCCTTTCTTTTCCTGTTTGAATA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACCCCCATGAAGCTTGTGGTTCCCCTTTCTTTTCCTGTTTGAATA  1036

seq1  GAAATTCATTTTCTTTAATCCCACCTGAGTTTAAAAAAAAAATTGTTGAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCATTTTCTTTAATCCCACCTGAGTTTAAAAAAAAAATTGTTGAA  1086

seq1  CTGCCCACTTCAGGAATTCAGTTGTTGGCTTTACTGAATGGAGGTATGCA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCACTTCAGGAATTCAGTTGTTGGCTTTACTGAATGGAGGTATGCA  1136

seq1  GGACTCTATGGTAAAAGAATTC  1163
      ||||||||||||||||||||||
seq2  GGACTCTATGGTAAAAGAATTC  1158


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