BAC Information

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BAC

Clone NameB6Ng01-241P14
Chromosome12 (Build37)
Map Location 57,707,566 - 57,806,247
singlet/doubletdoublet
Overlap geneNkx2-9, Pax9
Upstream geneGarnl1, Brms1l, LOC100039915, LOC382600, LOC382601, Mbip, EG621837, E030019B13Rik, Titf1, LOC100039993
Downstream geneSlc25a21, AU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241P14.bB6Ng01-241P14.g
ACCGA051750GA051751
length1,092693
definitionB6Ng01-241P14.b B6Ng01-241P14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,707,566 - 57,708,658)(57,805,556 - 57,806,247)
sequence
gaattcttccaaatatcccatccaatccccagactagaaaaagaggaaca
gaagaaaagaagaggaagaaaaaaaaagaagaagaactacagggcaattt
ggtattaagagtagaaaagagagaatctaattcagagcttttagctgaag
aaaagcatttaaaaacctgttactcatacaagaccacccactcagaatac
aggaggaagttatgcatgaccagtccctcagatgtccccccggtcacacc
ctgctcactgaagttatgtggaacggcagtcagttttgaaatgacccaaa
cataaaagaaacctaaaggggttttgggtttttgtttttcttgtttgtcc
caaggcaggttattaatgtgaaaactatttctacttctaatttgtaatgt
ttttgtttttttcatttcagaataaacactaaggcttgtgtactagacat
gactggaaaatctgagaacacctaaccttgaacatttggaaaggagctag
aatagaaggagcaccggactgttcaaccaatgcctacgcaactcttcttg
gtttccctgtaaggtcaaatcatcactgcagggctcagcatcaaagcatt
gctcaccttccttagtgaacttacagactgagcaatatgagtgacaggca
caaggagggaaggagaatgccttttggttattgtgcatgtgcaccagggg
gccagagagaggtgaacaggtacagaattagaattctgaaaataattaag
gagtcatttagaagactctacctccaaatgtcttggaaatataagtggtc
ctgagggatgcagtttctcaggcagatctgaacactaaataatatagcca
catctgcagaaagtgctatgcctggaggtaaagaccccgcttcctctaaa
ggcaactttgactatctgttattcacattcactgacaacttactccattt
agctgaaacattcatggcagacgacagttaaccagtattcacccatgtcg
agtctacagccatgtgcttggtgtatcttattcacaggcaaaattgcttt
atgtgtgtgtctgtgcatgtgtagaggagagaagagagggac
gaattctttcctctgatagaagtctgtaatacccgccccacagccagcta
ccctccacttaactttggaaatgagatttattaatacaaagtgaaacaga
taaattgcgtgtcccagaggaaaataagttttctatgttgagttgtctca
ggaaaggacaggtcttatctcatgagcactggaagaaatcaaggaaaagg
ctgaaggtataatacatgtaatatagcttgtgctactgaaggtgtaatac
atgtaatatagcttgtgctactgaaggtgtaatacatgtaatatagcttg
tgctactgaaggtgtaatacagcttgtgttaagtgatcacacggctgtac
tagcagacagagacctgcctcaaacatcctgtaggctcacacaaggggac
acaggagagacattttataaatgacttaccaaagacttgtgaatggaaaa
gatatgattctcttgttttaagaacaaaataaagagtttatcaccaccac
cctatcacaagacaagtatttacttcaagcaagccaaatgaataaagctg
ttggcaaaagtaaataagagttccaaccagcccttcactgtttgatttat
acttgttccatgtattcctccaactctaagaagatggaaatgtatacgta
cccaaacacttgtgagtatgaaaaggagggggggggggaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_57707566_57708658
seq2: B6Ng01-241P14.b_45_1136

seq1  GAATTCTTCCAAATATCCCATCCAATCCCCAGACTAGAAAAAGAGGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCAAATATCCCATCCAATCCCCAGACTAGAAAAAGAGGAACA  50

seq1  GAAGAAAAGAAGAGGAAGAAAAAAAAAGAAGAAGAACTACAGGGCAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAGAAGAGGAAGAAAAAAAAAGAAGAAGAACTACAGGGCAATTT  100

seq1  GGTATTAAGAGTAGAAAAGAGAGAATCTAATTCAGAGCTTTTAGCTGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTAAGAGTAGAAAAGAGAGAATCTAATTCAGAGCTTTTAGCTGAAG  150

seq1  AAAAGCATTTAAAAACCTGTTACTCATACAAGACCACCCACTCAGAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCATTTAAAAACCTGTTACTCATACAAGACCACCCACTCAGAATAC  200

seq1  AGGAGGAAGTTATGCATGACCAGTCCCTCAGATGTCCCCCCGGTCACACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAAGTTATGCATGACCAGTCCCTCAGATGTCCCCCCGGTCACACC  250

seq1  CTGCTCACTGAAGTTATGTGGAACGGCAGTCAGTTTTGAAATGACCCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCACTGAAGTTATGTGGAACGGCAGTCAGTTTTGAAATGACCCAAA  300

seq1  CATAAAAGAAACCTAAAGGGGTTTTGGGTTTTTGTTTTTCTTGTTTGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAGAAACCTAAAGGGGTTTTGGGTTTTTGTTTTTCTTGTTTGTCC  350

seq1  CAAGGCAGGTTATTAATGTGAAAACTATTTCTACTTCTAATTTGTAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAGGTTATTAATGTGAAAACTATTTCTACTTCTAATTTGTAATGT  400

seq1  TTTTGTTTTTTTCATTTCAGAATAAACACTAAGGCTTGTGTACTAGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTTTCATTTCAGAATAAACACTAAGGCTTGTGTACTAGACAT  450

seq1  GACTGGAAAATCTGAGAACACCTAACCTTGAACATTTGGAAAGGAGCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAAAATCTGAGAACACCTAACCTTGAACATTTGGAAAGGAGCTAG  500

seq1  AATAGAAGGAGCACCGGACTGTTCAACCAATGCCTACGCAACTCTTCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAGGAGCACCGGACTGTTCAACCAATGCCTACGCAACTCTTCTTG  550

seq1  GTTTCCCTGTAAGGTCAAATCATCACTGCAGGGCTCAGCATCAAAGCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCTGTAAGGTCAAATCATCACTGCAGGGCTCAGCATCAAAGCATT  600

seq1  GTTCACCTTCCTTAGTGAACTTACAGACTGAGCAATATGAGTGACAGGCA  650
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACCTTCCTTAGTGAACTTACAGACTGAGCAATATGAGTGACAGGCA  650

seq1  CAAGGAGGGAAGGAGAATGCCTTTTGGTTATTGTGCATGTG-ACCAGGGG  699
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAAGGAGGGAAGGAGAATGCCTTTTGGTTATTGTGCATGTGCACCAGGGG  700

seq1  GCCAGAGAGAGGTGAACAGGTACAGAATTAGAATTCTGAAAATAATTAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGAGAGGTGAACAGGTACAGAATTAGAATTCTGAAAATAATTAAG  750

seq1  GAGTCATTTAGAAGACTCTACCTCCAAATGTCTTGGAAATATAAGTGGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATTTAGAAGACTCTACCTCCAAATGTCTTGGAAATATAAGTGGTC  800

seq1  CTGAGGGATGCAGTTTCTCAGGCAGATCTGAACACTAAATAATATAGCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGATGCAGTTTCTCAGGCAGATCTGAACACTAAATAATATAGCCA  850

seq1  CATCTGCAGAAAGTGCTATGCCTGGAGGTAAAGACCCCGCTTCCTCTAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCAGAAAGTGCTATGCCTGGAGGTAAAGACCCCGCTTCCTCTAAA  900

seq1  GGCAACTTTGACTATCTGTTATTCACATTCACTGACAACTTACTCCATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACTTTGACTATCTGTTATTCACATTCACTGACAACTTACTCCATTT  950

seq1  AGCTGAAACATTCATGGCAGACGAACAGTTAACCAAGTATTCAACCATGT  999
      ||||||||||||||||||||||| |||||||||| |||||||| ||||||
seq2  AGCTGAAACATTCATGGCAGACG-ACAGTTAACC-AGTATTCACCCATGT  998

seq1  CGAGTCTACAGCCATGTGCTT-GTGTATCTTATTCACAAGGCAAAATTGC  1048
      ||||||||||||||||||||| ||||||||||||||| ||||||||||||
seq2  CGAGTCTACAGCCATGTGCTTGGTGTATCTTATTCAC-AGGCAAAATTGC  1047

seq1  TTTAATGTGTGTGTCTGTGCATGTGTAGA-GAGAGAAGAGAGGGAC  1093
      ||| ||||||||||||||||||||||||| ||||||||||||||||
seq2  TTT-ATGTGTGTGTCTGTGCATGTGTAGAGGAGAGAAGAGAGGGAC  1092

seq1: chr12_57805556_57806247
seq2: B6Ng01-241P14.g_64_756 (reverse)

seq1  CTCCT-CCCCCCCCCCTCCTTTTCATACTCACAAGTGTTTGGGTACGTAT  49
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCCCCCCCCCTCCTTTTCATACTCACAAGTGTTTGGGTACGTAT  50

seq1  ACATTTCCATCTTCTTAGAGTTGGAGGAATACATGGAACAAGTATAAATC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCCATCTTCTTAGAGTTGGAGGAATACATGGAACAAGTATAAATC  100

seq1  AAACAGTGAAGGGCTGGTTGGAACTCTTATTTACTTTTGCCAACAGCTTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTGAAGGGCTGGTTGGAACTCTTATTTACTTTTGCCAACAGCTTT  150

seq1  ATTCATTTGGCTTGCTTGAAGTAAATACTTGTCTTGTGATAGGGTGGTGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTGGCTTGCTTGAAGTAAATACTTGTCTTGTGATAGGGTGGTGG  200

seq1  TGATAAACTCTTTATTTTGTTCTTAAAACAAGAGAATCATATCTTTTCCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAACTCTTTATTTTGTTCTTAAAACAAGAGAATCATATCTTTTCCA  250

seq1  TTCACAAGTCTTTGGTAAGTCATTTATAAAATGTCTCTCCTGTGTCCCCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAGTCTTTGGTAAGTCATTTATAAAATGTCTCTCCTGTGTCCCCT  300

seq1  TGTGTGAGCCTACAGGATGTTTGAGGCAGGTCTCTGTCTGCTAGTACAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGCCTACAGGATGTTTGAGGCAGGTCTCTGTCTGCTAGTACAGC  350

seq1  CGTGTGATCACTTAACACAAGCTGTATTACACCTTCAGTAGCACAAGCTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGATCACTTAACACAAGCTGTATTACACCTTCAGTAGCACAAGCTA  400

seq1  TATTACATGTATTACACCTTCAGTAGCACAAGCTATATTACATGTATTAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACATGTATTACACCTTCAGTAGCACAAGCTATATTACATGTATTAC  450

seq1  ACCTTCAGTAGCACAAGCTATATTACATGTATTATACCTTCAGCCTTTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCAGTAGCACAAGCTATATTACATGTATTATACCTTCAGCCTTTTC  500

seq1  CTTGATTTCTTCCAGTGCTCATGAGATAAGACCTGTCCTTTCCTGAGACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTTCTTCCAGTGCTCATGAGATAAGACCTGTCCTTTCCTGAGACA  550

seq1  ACTCAACATAGAAAACTTATTTTCCTCTGGGACACGCAATTTATCTGTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAACATAGAAAACTTATTTTCCTCTGGGACACGCAATTTATCTGTTT  600

seq1  CACTTTGTATTAATAAATCTCATTTCCAAAGTTAAGTGGAGGGTAGCTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGTATTAATAAATCTCATTTCCAAAGTTAAGTGGAGGGTAGCTGG  650

seq1  CTGTGGGGCGGGTATTACAGACTTCTTTCAGAGGAAAGAATTC  692
      |||||||||||||||||||||||||| ||||||||||||||||
seq2  CTGTGGGGCGGGTATTACAGACTTCTATCAGAGGAAAGAATTC  693