BAC Information

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BAC

Clone NameB6Ng01-242D04
Chromosome12 (Build37)
Map Location 65,519,236 - 65,736,278
singlet/doubletdoublet
Overlap geneEG623046
Upstream geneLOC435302
Downstream geneLOC623123, LOC217645, LOC217647, Gm527, Klhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm, C79407, Wdr20b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242D04.bB6Ng01-242D04.g
ACCGA051906GA051907
length1,1061,118
definitionB6Ng01-242D04.b B6Ng01-242D04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,519,236 - 65,520,025)(65,735,164 - 65,736,278)
sequence
gaattcatgaaattcttaggcaaatgggtgcatctggatgatataatcct
gagtgaggtaacccaatcacaaaagaagtcacttgatatgcactcactga
taactggatattagcccagaaacttagaatacccaagatacaatttgcag
aatacaagaaaatcaataaggaagaccaacgtgtggatacttcattcctc
cttagaacagggaacaaaacaccaatggaaggagttacagagacaaagtt
tggagctgagatgaaagaatggacatccagagacttccccagacttcccc
agctgggtatccatcccataatcagccaccaaatgcagagactattgcat
atgccagcaagatttggctgaaaggaccctgatatagctgtcttgtgtga
ggctttgccattgcctggcaaatacagaagtggatgctcatagtcatctg
ttggatggaacatagggcccctaatggaggagctagagaaagtacctaag
agctgaaggggtctgcaaccctataggtcgaacaacaatatgaagtaacc
agtacacccagagcttgtgtcttctagctgcatatgtagtagtagaaggc
ctagctgaccatcattgggaagagaggccccttggtcttgcaaactttat
atgccccagtacagtgaaatgccagggccaagaagttgaagtgggtgagt
aggggagcagggcagggggcggggaagggtatagcagactttcaggatag
tatttgaaaagtaaatgaagaaaatatctaataaaaaaatttttaaaaag
aagtagtcacctaaataagaattgaatatcaattaccgcaggtttgacat
atcaatgcagacagggagaatcttctaggtccccactgctagacaaagga
gcttacaaacaattaatgggtgcttgctctgtggaaattagttttcctcc
taaggaggagtcctctggattaggttatttcaattccccattagcttatc
tatagacaccattcttaacatattattgcaaaaacttaaataacctccgg
gtagtacttatgttccagttttcttgagggaaccgcagatttgatttcca
gagtgg

gaattcaccacatctatggttatctgcataggacctgaacaagatttggc
cctcaatgtgagctgaaaggggtatttcagattcaaactactattggctc
taatctgagagcccttgttcttgggagaggaaagaagagagtggggacat
agctcagtcaataaaaggtttcctgccaaagcctgaacacccgtgcttga
tcccaaagctcaggtataaaacccgaggtggtagctagtatttgtatttc
caggctgggggaagctgagacaagtgtccaggtagcctagacgaatgcat
cctaagcctacttatgtaaggtaggcacatcagtttaattgtgaatatgc
tagttttactgtttgggataagaatataaagccctcttgggaattttata
gatcacatgtgctatagatatgttttctttatttctcatatataagtttt
ttttgagaaaaatacattaaattaaaataatatgtctccaaaataattaa
gtgaggagtggtgctatatgaaaatagaaaagaaatttgtggtgaaacga
cattccaagccattgtcttctcatgttagcagatttccagctgggggaag
acttcaggcataatcacagatcagtatgcatggagtgactatcttaacac
ccactaattcttctacaaactcggcataaatctaaaccaatcataattag
agccatattttctgcaaaatctagctatatattgaagagagattcgggac
taagttttgactttttgccaaattatttttgttcttgtttttaaaggaac
ttcattctctgagctacaggatttgcaagaatgaagagactaataccctg
taaagtggaaaagctggctgcatcagaggccgatagattactttttttag
cagatcagttattgtttgaagagagcatataacagttttaatgactatac
tataaaatatcaatataatttcttttggtgcttgacagaactgctcattt
ttagacaacaattttttaacaatttttgagtgagagatgctctctggaat
tgaacaaattgactctagattctgatgagcattcacttgcaagtctcagg
agtctatgaatatttaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_65519236_65520025
seq2: B6Ng01-242D04.b_336_1151

seq1  AGACTTCCCCAGCTGGGTATCCATCCCATAATCAGCCACCAAATGCAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCCCCAGCTGGGTATCCATCCCATAATCAGCCACCAAATGCAGAG  50

seq1  ACTATTGCATATGCCAGCAAGATTTGGCTGAAAGGACCCTGATATAGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGCATATGCCAGCAAGATTTGGCTGAAAGGACCCTGATATAGCTG  100

seq1  TCTTGTGTGAGGCTTTGCCATTGCCTGGCAAATACAGAAGTGGATGCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGTGAGGCTTTGCCATTGCCTGGCAAATACAGAAGTGGATGCTCA  150

seq1  TAGTCATCTGTTGGATGGAACATAGGGCCCCTAATGGAGGAGCTAGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATCTGTTGGATGGAACATAGGGCCCCTAATGGAGGAGCTAGAGAA  200

seq1  AGTACCTAAGAGCTGAAGGGGTCTGCAACCCTATAGGTCGAACAACAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCTAAGAGCTGAAGGGGTCTGCAACCCTATAGGTCGAACAACAATA  250

seq1  TGAAGTAACCAGTACACCCAGAGCTTGTGTCTTCTAGCTGCATATGTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAACCAGTACACCCAGAGCTTGTGTCTTCTAGCTGCATATGTAGT  300

seq1  AGTAGAAGGCCTAGCTGACCATCATTGGGAAGAGAGGCCCCTTGGTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAGGCCTAGCTGACCATCATTGGGAAGAGAGGCCCCTTGGTCTTG  350

seq1  CAAACTTTATATGCCCCAGTACAGTGAAATGCCAGGGCCAAGAAGTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTTATATGCCCCAGTACAGTGAAATGCCAGGGCCAAGAAGTTGAA  400

seq1  GTGGGTGAGTAGGGGAGCAGGGCAGGGGGCGGGGAAGGGTATAGCAGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGAGTAGGGGAGCAGGGCAGGGGGCGGGGAAGGGTATAGCAGACT  450

seq1  TTCAGGATAGTATTTGAAAAGTAAATGAAGAAAATATCTAATAAAAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGATAGTATTTGAAAAGTAAATGAAGAAAATATCTAATAAAAAAAT  500

seq1  TTTTAAAAAGAAGTAGTCACCTAAATAAGAATTGAATATCAA-TACCGCA  549
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTTAAAAAGAAGTAGTCACCTAAATAAGAATTGAATATCAATTACCGCA  550

seq1  GG-TTGACATATCAATGCAGACAGGGAGAATCTTCTAGGTCCCCACTGCT  598
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGACATATCAATGCAGACAGGGAGAATCTTCTAGGTCCCCACTGCT  600

seq1  AGACAAA-GAGC-TACAAACAATTAATGGGTGC-TGCTCTGTGGAAATTA  645
      ||||||| |||| |||||||||||||||||||| ||||||||||||||||
seq2  AGACAAAGGAGCTTACAAACAATTAATGGGTGCTTGCTCTGTGGAAATTA  650

seq1  G-TTTCCT-CTAAGGAGGAGTCCTCTG--ATAAGTTA-TTCAAT--CCCA  688
      | |||||| ||||||||||||||||||   || |||| ||||||  ||||
seq2  GTTTTCCTCCTAAGGAGGAGTCCTCTGGATTAGGTTATTTCAATTCCCCA  700

seq1  ATAGC-TATCTATAAACAC--ATCT--ACATAT--ATGCAAAA--CTAAA  729
       |||| |||||||| ||||   |||  ||||||   |||||||   ||||
seq2  TTAGCTTATCTATAGACACCATTCTTAACATATTATTGCAAAAACTTAAA  750

seq1  TAACCTCC-GGTAGTAC-TATG-TCCAATTTTC-TGA-GGAACCGCCAGA  774
      |||||||| |||||||| |||| |||| ||||| ||| ||||||| ||||
seq2  TAACCTCCGGGTAGTACTTATGTTCCAGTTTTCTTGAGGGAACCG-CAGA  799

seq1  -TTGATTTCCAGAGTGG  790
       ||||||||||||||||
seq2  TTTGATTTCCAGAGTGG  816


seq1: chr12_65735164_65736278
seq2: B6Ng01-242D04.g_66_1183 (reverse)

seq1  TCTAAATA-TCATAGACTCCTGAGAACCTGC-AGTGATGCCTCATTCAG-  47
      |||||||| ||||||||||||||| || ||| |||||   |||| |||| 
seq2  TCTAAATATTCATAGACTCCTGAG-ACTTGCAAGTGAATGCTCA-TCAGA  48

seq1  ATCTAGAGTC-ATTTGTTCAA-TCCAGAGAGCATCTTCTCACTC-AAAAT  94
      |||||||||| |||||||||| ||||||||||||| |||||||| |||||
seq2  ATCTAGAGTCAATTTGTTCAATTCCAGAGAGCATC-TCTCACTCAAAAAT  97

seq1  TGTT-AAAAATTGTTGTCTAAAAATGAAGCAGTTCTGTCAAGCACCAAAA  143
      |||| ||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGTTAAAAAATTGTTGTCTAAAAATG-AGCAGTTCTGTCAAGCACCAAAA  146

seq1  GAAATTATATTGATATTTTATAGTATAGTCATTAAAACTGTTTATATGCT  193
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAAATTATATTGATATTTTATAGTATAGTCATTAAAACTG-TTATATGCT  195

seq1  CTCTTCAAACAATAACTGATCTGCT-AAAAAAGTAATCTATCGGCCTCTG  242
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTCTTCAAACAATAACTGATCTGCTAAAAAAAGTAATCTATCGGCCTCTG  245

seq1  ATGCAGCCAGCTTTTCCACTTTACAGGGTATTAGTCTCTTCATTCTTGCA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCCAGCTTTTCCACTTTACAGGGTATTAGTCTCTTCATTCTTGCA  295

seq1  AATCCTGTAGCTCAGAGAATGAAGTTCCTTTAAAAACAAGAACAAAAATA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGTAGCTCAGAGAATGAAGTTCCTTTAAAAACAAGAACAAAAATA  345

seq1  ATTTGGCAAAAAGTCAAAACTTAGTCCCGAATCTCTCTTCAATATATAGC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCAAAAAGTCAAAACTTAGTCCCGAATCTCTCTTCAATATATAGC  395

seq1  TAGATTTTGCAGAAAATATGGCTCTAATTATGATTGGTTTAGATTTATGC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTTGCAGAAAATATGGCTCTAATTATGATTGGTTTAGATTTATGC  445

seq1  CGAGTTTGTAGAAGAATTAGTGGGTGTTAAGATAGTCACTCCATGCATAC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTTTGTAGAAGAATTAGTGGGTGTTAAGATAGTCACTCCATGCATAC  495

seq1  TGATCTGTGATTATGCCTGAAGTCTTCCCCCAGCTGGAAATCTGCTAACA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGTGATTATGCCTGAAGTCTTCCCCCAGCTGGAAATCTGCTAACA  545

seq1  TGAGAAGACAATGGCTTGGAATGTCGTTTCACCACAAATTTCTTTTCTAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGACAATGGCTTGGAATGTCGTTTCACCACAAATTTCTTTTCTAT  595

seq1  TTTCATATAGCACCACTCCTCACTTAATTATTTTGGAGACATATTATTTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATAGCACCACTCCTCACTTAATTATTTTGGAGACATATTATTTT  645

seq1  AATTTAATGTATTTTTCTCAAAAAAAACTTATATATGAGAAATAAAGAAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATGTATTTTTCTCAAAAAAAACTTATATATGAGAAATAAAGAAA  695

seq1  ACATATCTATAGCACATGTGATCTATAAAATTCCCAAGAGGGCTTTATAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCTATAGCACATGTGATCTATAAAATTCCCAAGAGGGCTTTATAT  745

seq1  TCTTATCCCAAACAGTAAAACTAGCATATTCACAATTAAACTGATGTGCC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCCCAAACAGTAAAACTAGCATATTCACAATTAAACTGATGTGCC  795

seq1  TACCTTACATAAGTAGGCTTAGGATGCATTCGTCTAGGCTACCTGGACAC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTACATAAGTAGGCTTAGGATGCATTCGTCTAGGCTACCTGGACAC  845

seq1  TTGTCTCAGCTTCCCCCAGCCTGGAAATACAAATACTAGCTACCACCTCG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCAGCTTCCCCCAGCCTGGAAATACAAATACTAGCTACCACCTCG  895

seq1  GGTTTTATACCTGAGCTTTGGGATCAAGCACGGGTGTTCAGGCTTTGGCA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATACCTGAGCTTTGGGATCAAGCACGGGTGTTCAGGCTTTGGCA  945

seq1  GGAAACCTTTTATTGACTGAGCTATGTCCCCACTCTCTTCTTTCCTCTCC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCTTTTATTGACTGAGCTATGTCCCCACTCTCTTCTTTCCTCTCC  995

seq1  CAAGAACAAGGGCTCTCAGATTAGAGCCAATAGTAGTTTGAATCTGAAAT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACAAGGGCTCTCAGATTAGAGCCAATAGTAGTTTGAATCTGAAAT  1045

seq1  ACCCCTTTCAGCTCACATTGAGGGCCAAATCTTGTTCAGGTCCTATGCAG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTTCAGCTCACATTGAGGGCCAAATCTTGTTCAGGTCCTATGCAG  1095

seq1  ATAACCATAGATGTGGTGAATTC  1115
      |||||||||||||||||||||||
seq2  ATAACCATAGATGTGGTGAATTC  1118


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