BAC Information

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BAC

Clone NameB6Ng01-242F19
Chromosome12 (Build37)5 (Build37)
Map Location 43,963,467 - 43,963,9816,062,453 - 6,063,372
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneImmp2l, EG638533
Downstream geneLOC100039059, ENSMUSG00000066507
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242F19.bB6Ng01-242F19.g
ACCGA052028GA052029
length1,178924
definitionB6Ng01-242F19.b B6Ng01-242F19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(43,963,467 - 43,963,981)(6,062,453 - 6,063,372)
sequence
gaattcactcctatggtggtttaatccctgggatcactgggtagtctagc
cagttgatgttcttcctatgaggttgcaatctccctctgctcctccagtt
cttctgccagctcccccatgggagtaactgagtttagtctgatggttggc
tccaaacatccatatccgcatttgtcagttgctcgaacagccacaccaag
tcctgtcggccaagcctcttggcaacagcaacaatgtctgggcttagtgt
cttcagataggatagatccccaggtggggcagtccccagatggcccttcc
ttcagtctctgctccatttttgtccatatctttcctttggacaggaacat
tgctgggttaaaactttgagatgggtgggtggccccattccttgaccagg
ggccatgcctatctattggaggtggtctttacaggttctatctccccttt
gctatgcatttcagctaaagtcatccataatgggtcctgggagtcctgag
atcctcttacttccctgtcatctaggaccctctagtggctatcctcagtt
cctcatccctcactgctacatatttctattcaattttctgaccctctgta
cctctctcctgtcccctacattttctcctcctcctctttctcttcctctt
cctccttctcttcctcctcctccttcttcctctctctctctctctctctc
tctctctctctctctccctctctcatcccaccctacttccatctcctgtg
aacatcctgtttccccttcaatgcttgaatgaggcatccacaccctggtc
ttccttcctcctaagatcacatatgtggggttgtattgtaagcattgtga
gcttttggggctaaatctctacttatccatgagtacatacaatgtctttt
tctttgtgtctaagttacctccacttaggttgatattttctagtttcatc
caattgcctatggataggtattgcataaaattatatcctcaaatgctgta
gggattgattttaatgcttctatagaatggctcttcccaaaaagtaacat
gtattatataccaatttccaacatgcctgccacaaaaaatgacaagtaca
tatctattttattagcctatattctcattcacaaaatatttgactgaacc
tcaattaattaaccagtagtatagaaat
gaattccaattaattaatccaattaagatttttgaaaagattctatttaa
cacacaatgaccattatgaaggcccaactgcatcactatatgctaatggt
aactatggaaaatattacctctaaattcactaacaaatccaataacccaa
aatttattaaactttgctgagaaaaattaaaggaagcgtaagtaaatgga
gagacatcatgctcttagactgagaaattaaaattttataagctatcaac
tttcttccatttttctagattaaatttcattccaataaacatttccaaca
gttggcgtctagagtgatgcctaactggttaaaagcacagtttactcttc
cagaggacccaggttctattcctagcccccacacaacagatcacaaccat
ttggaactcaagtcccaggtgatccgaggccctcttctgacctctaaggg
caccagacatgtatgtggtgcacatacatacatgaatgcaggcgaaacac
tgaaacacatgaaaataaattaatctttaaaaacatttcaagaatcgtcc
tttttaatctgtagaaatcagcagattgatttttcattttatattgaaat
aagagaaatctagtataccaacagcaagttttttgtttgtttgtttgttt
tttgtttgtttgtgctttgttttgttttgttttgttttgttttgttttga
gacagggtttctctgtgtagccctggctgtcctggaactcactctgtaga
ccaggctggtcttgaactcagaaatctgcctgccctctgcctcctgagag
ctagggattaagggcctgcgcccaccaacacctggctcaaggctttttgt
ttttgttttttttaattcttttttttaaaagatattttcttcatgtacat
ttcaaatgctattcctaaagtccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_43963467_43963981
seq2: B6Ng01-242F19.b_724_1221

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTC------CCAA  44
      ||||||||||||||||||||||||||||||||||||||||      || |
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCATCCCA  50

seq1  CCC--CCTCTGTGTCTTGTGTGTGTCTCTGTGT----GTAGATGGTCTGA  88
      |||  | ||  | || ||||    || |||| |     |  ||| | |||
seq2  CCCTACTTCCATCTCCTGTGAACATC-CTGTTTCCCCTTCAATGCT-TGA  98

seq1  --GATG-GTAAACA-ACTGTTGTATGTTCAGC---ACAGCTAATACGTGA  131
        || |  |  |||  ||| | |   |||  |   | | |  ||| ||| 
seq2  ATGAGGCATCCACACCCTGGTCTTCCTTCCTCCTAAGATCACATATGTGG  148

seq1  GTTCTCACTTGGATTCTCACTAAACTTCTTACACAGTAGTTTAGCTTCTT  181
      |       ||| |||     ||| | |  |     |   ||| |   || 
seq2  G------GTTGTATT----GTAAGCATTGT-----GAGCTTTTGGGGCTA  183

seq1  AAACTCTAATGTTTTATACCAGAGCAATGGTGAATCATATGGCCAGCATA  231
      || |||||     |||| |  ||      ||  ||   ||| |     | 
seq2  AATCTCTA----CTTATCCATGA------GTACATACAATGTC-----TT  218

seq1  GATATTAATGTCCATGTAGTGAAATGGCCCACTGAAAGTCACCTT---TA  278
        | ||  |||| |   ||| |  |   ||||| |   | |  ||   ||
seq2  TTTCTTTGTGTCTA---AGTTACCT---CCACTTAGGTTGATATTTTCTA  262

seq1  GATACA------TGCTTA--GCAAAGTATTGTGTGAAAAACAAGGATCAC  320
      | | ||      ||| ||  |  | ||||||  |  ||||  |  ||| |
seq2  GTTTCATCCAATTGCCTATGGATAGGTATTGCAT--AAAATTA-TATC-C  308

seq1  TCACCTTATTCTACACTGAGTTAGGATACTAGGTCAGGAGTCTTGCAGAG  370
      |||    || ||  |  || | |   || |   ||   ||  | ||    
seq2  TCA---AATGCTGTAGGGATTGATTTTAATGCTTCTATAGAATGGC----  351

seq1  CCCTGCTTCCCTATACCAGTAGTATAATGCAGGATGT-CTAATGGGACAT  419
           |||||| | |     ||||  ||| |  || | | |||       
seq2  ----TCTTCCCAAAA-----AGTAACATGTATTATATACCAAT-------  385

seq1  ATTCCAACATTC--------AGATATCGCAAGTA-GTATGTAAGAGTTGC  460
       ||||||||| |        | | ||  ||||||  ||| ||    ||  
seq2  -TTCCAACATGCCTGCCACAAAAAATGACAAGTACATATCTA----TTTT  430

seq1  AGTGAGACAACCATTGCTTATT-----AAT---------AACCTAACATA  496
      | | || | |  ||| || |||     |||         ||||| |  ||
seq2  A-TTAGCCTA-TATT-CTCATTCACAAAATATTTGACTGAACCTCAATTA  477

seq1  GT--GCCAGTAGTATAGAAAT  515
       |   ||||||||||||||||
seq2  ATTAACCAGTAGTATAGAAAT  498

seq1: chr5_6062453_6063372
seq2: B6Ng01-242F19.g_64_987

seq1  GAATTCCAATTAATTAATCCAATTAAGATTTTTGAAAAGATTCTATTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATTAATTAATCCAATTAAGATTTTTGAAAAGATTCTATTTAA  50

seq1  CACACAATGACCATTATGAAGGCCCAACTGCATCACTATATGCTAATGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAATGACCATTATGAAGGCCCAACTGCATCACTATATGCTAATGGT  100

seq1  AACTATGGAAAATATTACCTCTAAATTCACTAACAAATCCAATAACCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGGAAAATATTACCTCTAAATTCACTAACAAATCCAATAACCCAA  150

seq1  AATTTATTAAACTTTGCTGAGAAAAATTAAAGGAAGCGTAAGTAAATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTAAACTTTGCTGAGAAAAATTAAAGGAAGCGTAAGTAAATGGA  200

seq1  GAGACATCATGCTCTTAGACTGAGAAATTAAAATTTTATAAGCTATCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATCATGCTCTTAGACTGAGAAATTAAAATTTTATAAGCTATCAAC  250

seq1  TTTCTTCCATTTTTCTAGATTAAATTTCATTCCAATAAACATTTCCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCATTTTTCTAGATTAAATTTCATTCCAATAAACATTTCCAACA  300

seq1  GTTGGCGTCTAGAGTGATGCCTAACTGGTTAAAAGCACAGTTTACTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCGTCTAGAGTGATGCCTAACTGGTTAAAAGCACAGTTTACTCTTC  350

seq1  CAGAGGACCCAGGTTCTATTCCTAGCCCCCACACAACAGATCACAACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGACCCAGGTTCTATTCCTAGCCCCCACACAACAGATCACAACCAT  400

seq1  TTGGAACTCAAGTCCCAGGTGATCCGAGGCCCTCTTCTGACCTCTAAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACTCAAGTCCCAGGTGATCCGAGGCCCTCTTCTGACCTCTAAGGG  450

seq1  CACCAGACATGTATGTGGTGCACATACATACATGAATGCAGGCGAAACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGACATGTATGTGGTGCACATACATACATGAATGCAGGCGAAACAC  500

seq1  TGAAACACATGAAAATAAATTAATCTTTAAAAACATTTCAAGAATCGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACACATGAAAATAAATTAATCTTTAAAAACATTTCAAGAATCGTCC  550

seq1  TTTTTAATCTGTAGAAATCAGCAGATTGATTTTTCATTTTATATTGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATCTGTAGAAATCAGCAGATTGATTTTTCATTTTATATTGAAAT  600

seq1  AAGAGAAATCTAGTATACCAACAGCAAGTTTTTTGTTTGTTTGTTTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAATCTAGTATACCAACAGCAAGTTTTTTGTTTGTTTGTTTGTTT  650

seq1  TTTGTTTGTTTGTGCTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTGCTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGA  700

seq1  GACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGA  750

seq1  CCAGGCTGGTCTTGAACTCAGAAATCTGCCTG-CCTCTGCCTCCTGAGAG  799
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCAGGCTGGTCTTGAACTCAGAAATCTGCCTGCCCTCTGCCTCCTGAGAG  800

seq1  CTA-GGATTAAAGGCCTGCG-CCACCAACACCTGGCTCAA-GCTTTTTGT  846
      ||| ||||||| |||||||| ||||||||||||||||||| |||||||||
seq2  CTAGGGATTAAGGGCCTGCGCCCACCAACACCTGGCTCAAGGCTTTTTGT  850

seq1  TTTTGTTTTTTTTAAGTCTTTTTTTTAAAAGATATTTTCTTCATTTACAT  896
      ||||||||||||||| |||||||||||||||||||||||||||| |||||
seq2  TTTTGTTTTTTTTAATTCTTTTTTTTAAAAGATATTTTCTTCATGTACAT  900

seq1  TTCAAATGCTATCCCAAAAGTCCC  920
      |||||||||||| || ||||||||
seq2  TTCAAATGCTATTCCTAAAGTCCC  924