BAC Information

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BAC

Clone NameB6Ng01-242H18
Chromosome12 (Build37)
Map Location 10,991,709 - 10,992,883
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382567, Nt5c1b, Rdh14, LOC238074, LOC100042308, EG668435
Downstream geneKcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1, EG209550, LOC217390, LOC628327, LOC627110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242H18.bB6Ng01-242H18.g
ACCGA052114GA052115
length1,1851,152
definitionB6Ng01-242H18.b B6Ng01-242H18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcctttttggatgagaatcacaagacagcaaattgcttcaaata
actttcaacttagactgtccagtgtttttagttaaaatcaagaagtaata
tacaaaagttcacagaattttgtggctggaaggattgccaacagacatat
tctattatgggactctgtggcatgtgagctcctcagtgactctggaccag
tttgtgggaactgtctttggaattctattctctcttctatccagagtgaa
tacaaagagaactggaactaccaagtttcattttcagtttttaagatgct
gtccagagttatgactgcagtagtaagtacccaaggaatttataggcaaa
actatatttctgtataataattctcaattaatggattttttatggattta
aaacattattttctaaaagaatccatccttttcaccagaataagaaagag
gtttacatataaacacacacacacatacagagagagaaagagagtgagac
agacagacagacagagagacagagagacagaaacagagacaaagagatac
agagagacagagagacagaaaaaggcagagacagagataaagacaaagag
agacaaagggagttgactcatagatagaataacattagcacatatgtagc
aaatacaaaaaattctaatcctgatgtaattttttaaaatatgtggaaga
caagaaatcctaaaaaatcaaagctgggaaggacattttcaatcatccag
ctcaagagctatttatttccttggagcccatcaatccacaggataatcca
ccatcctcccacatcttcctctacaacgtagaattttctcctcagcccac
ctgcaagtataagaagcccaagataaccacccccactcatctaacaacat
ttgctaggaagtggagcacatcccatcttagccctaatgggaagggattc
tgactgatgggtgggtgacttgtccaaaagatatgcttagagcaaccaat
ttaacacctttgctggtggcagtcatcagctttgggataagacatgaagg
agatgtgtcagtaaaggtctaagaaattgttgactagcatagtaacaaat
cccaaatttccctatagtgtaagagatgcctgaattatcctttctcatga
agtcaccccgattgaaccattttctagggtggagg

gaattctctttaatagggacggggtttggttttctcgctctcttgcttct
tgctctcttgcttcttgcactctggctcctgaagatgtaagcaataaagc
tttgccgcagaagattctggtctgtggtgttcttcctggccggtcgtgag
aacgcgtctaataacaattggtgccgaattccgggacgagaaaaaaaaac
tcgggactggcgcaaggaagatccctcattccagaaccagaactgcgggt
cgcggtaataaaggttcccgtaaagcagactgttaagaaggattcaactg
tatgaattcagaacttttcagctggggaacgagagtaccagtgagtacag
ctttacgaggtaagtctgatcttgaactttctaaggaaattcaagacagt
ctatcagaagtaaagtggaatatgtttggccttgaattttttctggtgtt
aggagcccttttgttccttttcacatgttatcaagtgattaagatagggc
tgaaaattctagaggaaattcaggacaagctatcagaagtaaagcgggga
gagagagtaggagcaaagagaaaatatggtacacaaaataagtatacagg
cctttccaagggtcttgaacccgaggaaaagtttaggtcaggtaagaata
cctggggagagattagaaggaaggaaaagaaaaaagaaaagaaaaaagat
cgattagcggaggtctctaggagatactcgtcactagatgagctcaggaa
gccagctcttagtagttctgaagcagatgaagaattctcctctgaggaaa
cagactgggaggaagaagcagcccattaccagccagctaattggtcaaga
aaaaagccaaaagcggctggcgaaggccagtttgctgattggcctcaggg
cagtcggcttcaaaggtccgccctatgcggagtccccgccctgcgtagtg
cgtcagcaatgcgcagagaggcagtgcgcagagaggcagtgcgcagactc
atcattccagagaggacaaaggaaaatacacagcatttcggtctttgaag
agcggaggtgggcgtgtcacgctcgtagatactaccaaattaggaaattg
cagtcgctccgtaaattgacaatgcctaatttacttgggtgcagattaga
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_10991709_10992883
seq2: B6Ng01-242H18.b_47_1231

seq1  GAATTCTCCTTTTTGGATGAGAATCACAAGACAGCAAATTGCTTCAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTTTTGGATGAGAATCACAAGACAGCAAATTGCTTCAAATA  50

seq1  ACTTTCAACTTAGACTGTCCAGTGTTTTTAGTTAAAATCAAGAAGTAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAACTTAGACTGTCCAGTGTTTTTAGTTAAAATCAAGAAGTAATA  100

seq1  TACAAAAGTTCACAGAATTTTGTGGCTGGAAGGATTGCCAACAGACATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAGTTCACAGAATTTTGTGGCTGGAAGGATTGCCAACAGACATAT  150

seq1  TCTATTATGGGACTCTGTGGCATGTGAGCTCCTCAGTGACTCTGGACCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTATGGGACTCTGTGGCATGTGAGCTCCTCAGTGACTCTGGACCAG  200

seq1  TTTGTGGGAACTGTCTTTGGAATTCTATTCTCTCTTCTATCCAGAGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGGAACTGTCTTTGGAATTCTATTCTCTCTTCTATCCAGAGTGAA  250

seq1  TACAAAGAGAACTGGAACTACCAAGTTTCATTTTCAGTTTTTAAGATGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGAGAACTGGAACTACCAAGTTTCATTTTCAGTTTTTAAGATGCT  300

seq1  GTCCAGAGTTATGACTGCAGTAGTAAGTACCCAAGGAATTTATAGGCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGAGTTATGACTGCAGTAGTAAGTACCCAAGGAATTTATAGGCAAA  350

seq1  ACTATATTTCTGTATAATAATTCTCAATTAATGGATTTTTTATGGATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATTTCTGTATAATAATTCTCAATTAATGGATTTTTTATGGATTTA  400

seq1  AAACATTATTTTCTAAAAGAATCCATCCTTTTCACCAGAATAAGAAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTATTTTCTAAAAGAATCCATCCTTTTCACCAGAATAAGAAAGAG  450

seq1  GTTTACATATAAACACACACACACATACAGAGAGAGAAAGAGAGTGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACATATAAACACACACACACATACAGAGAGAGAAAGAGAGTGAGAC  500

seq1  AGACAGACAGACAGAGAGACAGAGAGACAGAAACAGAGACAAAGAGATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGACAGACAGAGAGACAGAGAGACAGAAACAGAGACAAAGAGATAC  550

seq1  AGAGAGACAGAGAGACAGAAAAAGGCAGAGACAGAGATAAAGACAAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACAGAGAGACAGAAAAAGGCAGAGACAGAGATAAAGACAAAGAG  600

seq1  AGACAAAGGGAGTTGACTCATAGATAGAATAACATTAGCACATATGTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAGGGAGTTGACTCATAGATAGAATAACATTAGCACATATGTAGC  650

seq1  AAATACAAAAAATTCTAATCCTGATGTAATTTTTTAAAATATGTGGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAAAAAATTCTAATCCTGATGTAATTTTTTAAAATATGTGGAAGA  700

seq1  CAAGAAATCCTAAAAAATCAAAGCTGGGAAGGACATTTTCAATCATCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAATCCTAAAAAATCAAAGCTGGGAAGGACATTTTCAATCATCCAG  750

seq1  CTCAAGAGCTATTTATTTCCTTGGAGCCCATCAATCCACAGGATAATCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAGCTATTTATTTCCTTGGAGCCCATCAATCCACAGGATAATCCA  800

seq1  CCATCCTCCCACATCTTCCTCTACAACGTAGAATTTTCTCCTCAGCCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTCCCACATCTTCCTCTACAACGTAGAATTTTCTCCTCAGCCCAC  850

seq1  CTGCAAGTATAAGAAGCCCAAGATAACCACCCCCACTCATCTAACAACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGTATAAGAAGCCCAAGATAACCACCCCCACTCATCTAACAACAT  900

seq1  TTGCTAGGAAGTGGAGCACATCCCATCTTAGCCCTAATGGGAAGGGATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGGAAGTGGAGCACATCCCATCTTAGCCCTAATGGGAAGGGATTC  950

seq1  TGACTGAT-GGTGGGTGACTTGTCC-AAAGATATGCTTAGAGCAACC-AT  997
      |||||||| |||||||||||||||| ||||||||||||||||||||| ||
seq2  TGACTGATGGGTGGGTGACTTGTCCAAAAGATATGCTTAGAGCAACCAAT  1000

seq1  TTAACA-CTTTGCT-GTGGCAGTCATCAGCTTT-GGATAAGACATGAAGG  1044
      |||||| ||||||| |||||||||||||||||| ||||||||||||||||
seq2  TTAACACCTTTGCTGGTGGCAGTCATCAGCTTTGGGATAAGACATGAAGG  1050

seq1  AGATGTTGTCAGTAAA-GTCT-AGAAAT--GTGACTTAGCATAGT-ACAA  1089
      ||||| |||||||||| |||| ||||||   |||| ||||||||| ||||
seq2  AGATG-TGTCAGTAAAGGTCTAAGAAATTGTTGAC-TAGCATAGTAACAA  1098

seq1  ATCCCAAATTT-CCTATAGTGTAAGAGATG-CTGAA-TAACCCTTCTCAT  1136
      ||||||||||| |||||||||||||||||| ||||| || || |||||||
seq2  ATCCCAAATTTCCCTATAGTGTAAGAGATGCCTGAATTATCCTTTCTCAT  1148

seq1  GGAAAAATCACCCCAAATGACCCATTTTCTA-GGTGGAGG  1175
      |   || ||||||| | ||| |||||||||| ||||||||
seq2  G---AAGTCACCCCGATTGAACCATTTTCTAGGGTGGAGG  1185


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