BAC Information

Click to search

BAC

Clone NameB6Ng01-242L07
Chromosome12 (Build37)
Map Location 10,731,424 - 10,880,583
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC382567, Nt5c1b, Rdh14, LOC238074
Downstream geneLOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1, EG209550, LOC217390, LOC628327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242L07.bB6Ng01-242L07.g
ACCGA052279GA052280
length4721,169
definitionB6Ng01-242L07.b B6Ng01-242L07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,880,106 - 10,880,583)(10,731,424 - 10,732,592)
sequence
agacccaagcgcccctagtaaaaaacctggagcagactgctgaggtggct
cagcagataaaggtgtctgccacaaaggtgtcttatgacctaagtgccat
tcttgggacccacatggtagaaagaaagaaccaagttctgttgtcttttc
acagctacttgatgctgtggcattttaacaatcaattttctgccttgact
ctaacatattgcacgttgtacacaaaataaatgaacaaaaaatacattaa
aaatttttagagctgagtgcatgctggtaacctcagttggggagtggaga
cagatagatgcctagggctcactggcctactagtctagcaaactggtaag
cagcatgtgtaatgaaagaatccacttcaaagacaaaaagagagaaaaga
acagaaaagaaagaagggatacaggaaggcaggaaggcaagaaggaaagg
aaggaagggagggagggaggga

gaattctttattcaaacttcaaatccaatcagaaagatataaggcactca
tataaaaactatgatgactggtttgtttgtttgtttgtttgtttgttttc
ttctggcaactaatcacaaactagagttatctggaaagagaaaaacccca
actgagaaaatgtcctatcagactgacctataactctgtaaggcattttt
tctaattaataacttatacaggtcatcccagcacagtagcggtggtgtca
ctcctggactgatggtcctgtattctataacaaagcaggctgagcgagtc
actagggaacaatccaataatcagcactcctccatggtctgcttcagcct
ttgcctccaggttgctgtactaggttctaccttgccatctcttagtgatc
gactgtgattgagacttccaggctaaataaaccctttcttccacaagctg
actttggtcatggtgcttatcacagcaatagaaaacagagtaagatagaa
acagtaggtgcatcttgcctggtgggtcagagttttagtatacaaaatcc
acctctgggcaagacttttctcccccagtagtcttcataacacctcccac
acggagaaacctagctaacattaaggaagcatatagctcacttctagacc
gatttctctatgtcctacaaactaaagtatgtgttatctccagcaactgg
gtattgctatatagttctggtaaataagcaagagaattggcaatagtttg
tttgatttttttatgctcttctatcaacattcagttgagatcagaattag
aaacattcaatcccaaaaagctctgcatttggaaacttgcattattttta
atctctaatgggaagcctgattctaaagttggcccatttctagacatcat
ttttcaattacaggaacatcattaatgtcacaccagcatctactacagag
atcccaagtcagtcagtcaatcctgctttgttctgatatagagccactaa
cacactgcacctgtatggattaatttgaattcacccaactttcaatcaaa
tcagtttcaatatattcaccattcttcaaatgcttcagtagcagaatagt
caaataattttcatcatggaagaaaaatccgtggttacatggaattcaaa
gaagaaaggatttcctgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_10880106_10880583
seq2: B6Ng01-242L07.b_45_522 (reverse)

seq1  TCCCTCCCTCCCTCCCTTCCTTCCTTTCCTTCTTGCCTTCCTGCCTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCTCCCTCCCTTCCTTCCTTTCCTTCTTGCCTTCCTGCCTTCCT  50

seq1  GTATCCCTTCTTTCTTTTCTGTTCTTTTCTCTCTTTTTGTCTTTGAAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCCTTCTTTCTTTTCTGTTCTTTTCTCTCTTTTTGTCTTTGAAGTG  100

seq1  GATTCTTTCATTACACATGCTGCTTACCAGTTTGCTAGACTAGTAGGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTCATTACACATGCTGCTTACCAGTTTGCTAGACTAGTAGGCCA  150

seq1  GTGAGCCCTAGGCATCTATCTGTCTCCACTCCCCAACTGAGGTTACCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCCTAGGCATCTATCTGTCTCCACTCCCCAACTGAGGTTACCAGC  200

seq1  ATGCACTCAGCTCTAAAAATTTTTAATGTATTTTTTGTTCATTTATTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTCAGCTCTAAAAATTTTTAATGTATTTTTTGTTCATTTATTTTG  250

seq1  TGTACAACGTGCAATATGTTAGAGTCAAGGCAGAAAATTGATTGTTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAACGTGCAATATGTTAGAGTCAAGGCAGAAAATTGATTGTTAAAA  300

seq1  TGCCACAGCATCAAGTAGCTGTGAAAAGACAACAGAACTTGGTTCTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACAGCATCAAGTAGCTGTGAAAAGACAACAGAACTTGGTTCTTTCT  350

seq1  TTCTACCATGTGGGTCCCAAGAATGGCACTTAGGTCATAAGACACCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCATGTGGGTCCCAAGAATGGCACTTAGGTCATAAGACACCTTTG  400

seq1  TGGCAGACACCTTTATCTGCTGAGCCACCTCAGCAGTCTGCTCCAGGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGACACCTTTATCTGCTGAGCCACCTCAGCAGTCTGCTCCAGGTTT  450

seq1  TTTACTAGGGGCGCTTGGGTCTGAATTC  478
      ||||||||||||||||||||||||||||
seq2  TTTACTAGGGGCGCTTGGGTCTGAATTC  478


seq1: chr12_10731424_10732592
seq2: B6Ng01-242L07.g_68_1236

seq1  GAATTCTTTATTCAAACTTCAAATCCAATCAGAAAGATATAAGGCACTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTCAAACTTCAAATCCAATCAGAAAGATATAAGGCACTCA  50

seq1  TATAAAAACTATGATGACTGGTTTGTTTGTTTGTTTGTTTGTTTGTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAACTATGATGACTGGTTTGTTTGTTTGTTTGTTTGTTTGTTTTC  100

seq1  TTCTGGCAACTAATCACAAACTAGAGTTATCTGGAAAGAGAAAAACCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCAACTAATCACAAACTAGAGTTATCTGGAAAGAGAAAAACCCCA  150

seq1  ACTGAGAAAATGTCCTATCAGACTGACCTATAACTCTGTAAGGCATTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAAAATGTCCTATCAGACTGACCTATAACTCTGTAAGGCATTTTT  200

seq1  TCTAATTAATAACTTATACAGGTCATCCCAGCACAGTAGCGGTGGTGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTAATAACTTATACAGGTCATCCCAGCACAGTAGCGGTGGTGTCA  250

seq1  CTCCTGGACTGATGGTCCTGTATTCTATAACAAAGCAGGCTGAGCGAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGACTGATGGTCCTGTATTCTATAACAAAGCAGGCTGAGCGAGTC  300

seq1  ACTAGGGAACAATCCAATAATCAGCACTCCTCCATGGTCTGCTTCAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGGAACAATCCAATAATCAGCACTCCTCCATGGTCTGCTTCAGCCT  350

seq1  TTGCCTCCAGGTTGCTGTACTAGGTTCTACCTTGCCATCTCTTAGTGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCCAGGTTGCTGTACTAGGTTCTACCTTGCCATCTCTTAGTGATC  400

seq1  GACTGTGATTGAGACTTCCAGGCTAAATAAACCCTTTCTTCCACAAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGATTGAGACTTCCAGGCTAAATAAACCCTTTCTTCCACAAGCTG  450

seq1  ACTTTGGTCATGGTGCTTATCACAGCAATAGAAAACAGAGTAAGATAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGTCATGGTGCTTATCACAGCAATAGAAAACAGAGTAAGATAGAA  500

seq1  ACAGTAGGTGCATCTTGCCTGGTGGGTCAGAGTTTTAGTATACAAAATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGGTGCATCTTGCCTGGTGGGTCAGAGTTTTAGTATACAAAATCC  550

seq1  ACCTCTGGGCAAGACTTTTCTCCCCCAGTAGTCTTCATAACACCTCCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGGGCAAGACTTTTCTCCCCCAGTAGTCTTCATAACACCTCCCAC  600

seq1  ACGGAGAAACCTAGCTAACATTAAGGAAGCATATAGCTCACTTCTAGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGAAACCTAGCTAACATTAAGGAAGCATATAGCTCACTTCTAGACC  650

seq1  GATTTCTCTATGTCCTACAAACTAAAGTATGTGTTATCTCCAGCAACTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTCTATGTCCTACAAACTAAAGTATGTGTTATCTCCAGCAACTGG  700

seq1  GTATTGCTATATAGTTCTGGTAAATAAGCAAGAGAATTGGCAATAGTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGCTATATAGTTCTGGTAAATAAGCAAGAGAATTGGCAATAGTTTG  750

seq1  TTTGATTTTTTTATGCTCTTCTATCAACATTCAGTTGAGATCAGAATTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTTTTTATGCTCTTCTATCAACATTCAGTTGAGATCAGAATTAG  800

seq1  AAACATTCAATCCCAAAAAGCTCTGCATTTGGAAACTTGCATTATTTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTCAATCCCAAAAAGCTCTGCATTTGGAAACTTGCATTATTTTTA  850

seq1  ATCTCTAATGGGAAGCCTGATTCTAAAGTTGGCCCATTTCTAGACATCA-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATCTCTAATGGGAAGCCTGATTCTAAAGTTGGCCCATTTCTAGACATCAT  900

seq1  TTTTCAATTACAGGAACATCATTAATGTCACACCAGCATCTACTACAGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATTACAGGAACATCATTAATGTCACACCAGCATCTACTACAGAG  950

seq1  ATCCCAAGTCAGTCAGTCAATCCTGCTTTG-TCTGATATAGGAGCCACTA  998
      |||||||||||||||||||||||||||||| ||||||||| |||||||||
seq2  ATCCCAAGTCAGTCAGTCAATCCTGCTTTGTTCTGATATA-GAGCCACTA  999

seq1  CACAC-CTGCACCTGTATGGATTTAAATTTGAATTCACCCAAACTTTCAA  1047
       |||| |||||||||||||||||  ||||||||||||||| ||||||| |
seq2  -ACACACTGCACCTGTATGGATT--AATTTGAATTCACCC-AACTTTC-A  1044

seq1  ATCAAAATTCAG-TTCCATATATTCACCATTCTTCAAATGC-TCAGTAGC  1095
      ||||||  |||| ||| |||||||||||||||||||||||| ||||||||
seq2  ATCAAA--TCAGTTTCAATATATTCACCATTCTTCAAATGCTTCAGTAGC  1092

seq1  AG-ATA-TCAAAT-ATTTCCATCATGAAAGAAAATTTCGTTGGTACCATG  1142
      || ||| |||||| |||| ||||||| ||||||| | || ||||  ||||
seq2  AGAATAGTCAAATAATTTTCATCATGGAAGAAAAATCCG-TGGTTACATG  1141

seq1  --ATTCAAAGACAGAAAGGATTTCCTGTG  1169
        ||||||||| |||||||||||||||||
seq2  GAATTCAAAGA-AGAAAGGATTTCCTGTG  1169


| Home | SequenceCutter | Blast | Download |