BAC Information

Click to search

BAC

Clone NameB6Ng01-243K09
Chromosome12 (Build37)
Map Location 47,914,791 - 47,915,890
singlet/doubletsinglet
Overlap geneNova1
Upstream geneLOC664952
Downstream geneLOC100039190, EG664891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243K09.bB6Ng01-243K09.g
ACCGA052974GA052975
length1,1091,160
definitionB6Ng01-243K09.b B6Ng01-243K09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcaatagtttgtagtaagatgcaattttaattcaataattaact
cttcgaacagactcatctccactctacagatagactgatttccctctgtt
ttctcgtcacacttgactagaccctgtaaaattatctagggtcttagtat
cattcagtctaagagcctttgagctttttttctaccttcttgtacataac
agatacttgctgtgcacacatccagatgaactaaattagaaaccgtgatt
catattgttgagttacaaagaagatcctatagggtgctgcagtgatttag
cagcccatatttgtatgtctcagataaatacatccatatgcacacaaaca
tgtatttatgattgccgtgttctaccagaatgagcgttcctggggtttat
ttcagggaagcatttttttttctggttcttgtttggttatagtatatttg
ggggaaaatgcaacttagttttagaaactactagagttactcaaattact
tatcatttaaaatcaagtgtaagtgtgttgttaaacatttagtaaaaata
cttatgtattttcaaaactttctccaagatgtttattccagaatacagtg
accttttgaaacattttaatacacctcaactcaaataatgggcacatgta
aaaaactgtagctaatataatttctataatcgtgtttatctattaggtca
gattgtgtctttgttatattataagcaaacctacatttctgagtaaagat
ctataacgtgcagtcaaaatgaaggagacaaaacaaattgtatgaattta
ttaaggtttatacagctaaacgttgtatgtatttatttcagtgtctcatg
tatggagtgactaggggaattgtgtaatggggagttgaaaaggacatttc
tatcattggaatcaggagaaaatgacccactaatagattatacttcgtat
tctgtatatttcttctctatattgatacactaagactcagtcttccaagg
atacagaacttttcattggtgatttaggaatgtagcttttctccttaact
tgatttaaagaaaatctaattgaacttatttaatgtattcctttatatag
tagggttac

gaattctttgtttatctctttaccccatttttaacagggttatttgattt
ttctacagtccaacttcttgagttctttatatattggatattagccccag
ctaaaacaatcttaaacaatagaagaaccagtgatgttatcagtgtctct
gatttcaagcagtactatagaactatagttaaaaacatgcatggtaatga
cataaaaacacatataatgttcactagaattgaatctaatgtgcagacat
aaattcaaacacatatgggcatctgatttttgattaaataaaaaccagaa
atacacactggaaaaaaaacatggcatcttaacaaatagtgccggtctaa
ctggatttctgcatgtagaagaatgcaaatacatacatatttatcaccct
acacaaatctcaaatccaattggataaaaatccgcaacataaaaccagac
aaaatgaacctgatagacttaaaaatggcagatagccttgaacatgtttt
cacatgatacaacgtcctgaataagacactgatagcacagggactaagat
caacaactaattaatgaaacgacatgaaactgaaaagcttttgtaaggag
aagaaaaccatcatttaacaaaatggcagccgaaagagtgtgtaaaggtt
ttccccaactctacatctgataaagggctaacgtccaaaatgtacaaaga
actcaagaatctagatactaaaaaatcaaataatctaatttaaaaataaa
tatagacctaaaaagagaattctcaacagagtcatcctaaacgactgaac
aacactcaaggaaatgttcaacatgcttagccatcacggtaatgcaaatc
aataattccttgagagtccatcttacacttgacagaatgctttaggtcaa
taacacaagtggcagctcatcctgacagtgatgtggagcaaaggagacac
tccttccattgctggaagagtgcaatcttgtaagccaaattgttatagaa
atcatatggcgggtccttagaaattgggatccaggctagctgagatctag
ctaatatactctgcatataccgaaggatgctctaccctacataggacctg
gcttaaccatgtcatgtgccttatacacagaaacctgaaacacgtaagat
attccctcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_47914791_47915890
seq2: B6Ng01-243K09.b_46_1154 (reverse)

seq1  GTAA-CCTACT-TATAAAAGAATACA-TAAATAAGTCCAATTAGA-TTTC  46
      |||| |||||| |||||| ||||||| ||||||||| |||||||| ||||
seq2  GTAACCCTACTATATAAAGGAATACATTAAATAAGTTCAATTAGATTTTC  50

seq1  TTT-AATCAAGTT-AGGAG-AAAGCTACATTCCTAAATCACCAATGAAAA  93
      ||| ||||||||| ||||| ||||||||||||||||||||||||||||||
seq2  TTTAAATCAAGTTAAGGAGAAAAGCTACATTCCTAAATCACCAATGAAAA  100

seq1  G-TCTGTATCC-TGGAAGACTGAGTCTTAGTGTATCAATATAGAGAAGAA  141
      | ||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTATCCTTGGAAGACTGAGTCTTAGTGTATCAATATAGAGAAGAA  150

seq1  ATATACAGAATACGAAGTATAATCTATTAGTGGGTCATTTTCTCCTGATT  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAGAATACGAAGTATAATCTATTAGTGGGTCATTTTCTCCTGATT  200

seq1  CCAATGATAGAAATGTCCTTTTCAACTCCCCATTACACAATTCCCCTAGT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGATAGAAATGTCCTTTTCAACTCCCCATTACACAATTCCCCTAGT  250

seq1  CACTCCATACATGAGACACTGAAATAAATACATACAACGTTTAGCTGTAT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCATACATGAGACACTGAAATAAATACATACAACGTTTAGCTGTAT  300

seq1  AAACCTTAATAAATTCATACAATTTGTTTTGTCTCCTTCATTTTGACTGC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTAATAAATTCATACAATTTGTTTTGTCTCCTTCATTTTGACTGC  350

seq1  ACGTTATAGATCTTTACTCAGAAATGTAGGTTTGCTTATAATATAACAAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTATAGATCTTTACTCAGAAATGTAGGTTTGCTTATAATATAACAAA  400

seq1  GACACAATCTGACCTAATAGATAAACACGATTATAGAAATTATATTAGCT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAATCTGACCTAATAGATAAACACGATTATAGAAATTATATTAGCT  450

seq1  ACAGTTTTTTACATGTGCCCATTATTTGAGTTGAGGTGTATTAAAATGTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTTTACATGTGCCCATTATTTGAGTTGAGGTGTATTAAAATGTT  500

seq1  TCAAAAGGTCACTGTATTCTGGAATAAACATCTTGGAGAAAGTTTTGAAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGGTCACTGTATTCTGGAATAAACATCTTGGAGAAAGTTTTGAAA  550

seq1  ATACATAAGTATTTTTACTAAATGTTTAACAACACACTTACACTTGATTT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAAGTATTTTTACTAAATGTTTAACAACACACTTACACTTGATTT  600

seq1  TAAATGATAAGTAATTTGAGTAACTCTAGTAGTTTCTAAAACTAAGTTGC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGATAAGTAATTTGAGTAACTCTAGTAGTTTCTAAAACTAAGTTGC  650

seq1  ATTTTCCCCCAAATATACTATAACCAAACAAGAACCAGAAAAAAAAATGC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCCCCAAATATACTATAACCAAACAAGAACCAGAAAAAAAAATGC  700

seq1  TTCCCTGAAATAAACCCCAGGAACGCTCATTCTGGTAGAACACGGCAATC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGAAATAAACCCCAGGAACGCTCATTCTGGTAGAACACGGCAATC  750

seq1  ATAAATACATGTTTGTGTGCATATGGATGTATTTATCTGAGACATACAAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATACATGTTTGTGTGCATATGGATGTATTTATCTGAGACATACAAA  800

seq1  TATGGGCTGCTAAATCACTGCAGCACCCTATAGGATCTTCTTTGTAACTC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGCTGCTAAATCACTGCAGCACCCTATAGGATCTTCTTTGTAACTC  850

seq1  AACAATATGAATCACGGTTTCTAATTTAGTTCATCTGGATGTGTGCACAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATGAATCACGGTTTCTAATTTAGTTCATCTGGATGTGTGCACAG  900

seq1  CAAGTATCTGTTATGTACAAGAAGGTAGAAAAAAAGCTCAAAGGCTCTTA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATCTGTTATGTACAAGAAGGTAGAAAAAAAGCTCAAAGGCTCTTA  950

seq1  GACTGAATGATACTAAGACCCTAGATAATTTTACAGGGTCTAGTCAAGTG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAATGATACTAAGACCCTAGATAATTTTACAGGGTCTAGTCAAGTG  1000

seq1  TGACGAGAAAACAGAGGGAAATCAGTCTATCTGTAGAGTGGAGATGAGTC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGAGAAAACAGAGGGAAATCAGTCTATCTGTAGAGTGGAGATGAGTC  1050

seq1  TGTTCGAAGAGTTAATTATTGAATTAAAATTGCATCTTACTACAAACTAT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCGAAGAGTTAATTATTGAATTAAAATTGCATCTTACTACAAACTAT  1100

seq1  TGAGAATTC  1100
      |||||||||
seq2  TGAGAATTC  1109


| Home | SequenceCutter | Blast | Download |