BAC Information

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BAC

Clone NameB6Ng01-243M11
Chromosome12 (Build37)
Map Location 41,455,342 - 41,522,855
singlet/doubletdoublet
Overlap geneDock4
Upstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277
Downstream geneLOC638487, LOC100043157, LOC100043162, Lrrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243M11.bB6Ng01-243M11.g
ACCGA053074GA053075
length1,1501,116
definitionB6Ng01-243M11.b B6Ng01-243M11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,521,714 - 41,522,855)(41,455,342 - 41,456,467)
sequence
gaattcaatgtgcaggggacagtgagtgaaacttaagcatattaaagcag
aaaattttcacaggttagaaaataagagttcagtaattgttatgaaaaca
tacaaagattgtgagggagaggaagaagatgggcagacaggaatagtcaa
cagagaaatgaagggacttcaatgccgatattgtgcttttccaagaaaag
catctagactgagtaagaaactcaagaggggaagacagcagcacgcagtc
cctctgtgaggtctgctcactgctaccagcccagcccagcccagcccagc
ccagcccagcccagcccagcccagcccagcccagcccagcccagcccagc
ccagcccagcaggagtattctgcaatgttctgagctgaagattttctggg
cttcattcaacctaagggtcactatcttccctttaaaaaaaacacttttc
catttttgtaagaaacatcctgaaaaagggcacatggaagattaaaaaca
aacaaaacttagtgcttcagtgaagagcagcagaggttagaaggaagggg
gagacggagtcagacactaaccaaaaggctaactgtgcagccaatcttct
tgccatccacctctcctatcttcatgcagtccctgtaaacagaaagcaag
agtcacaccgggaactttctcttgtggggaaaacacagttgttctttgct
gtctgatgtgtgggtaggtgaggtatcctcaaagatcagagacgattgtg
tgggttcagggaaaggggactgggcagaagatctctgatgggactggaag
tagagactgactcccagctgcagtaggcaagcaatatgcctctcaatgga
cagggactcagggagcaggggagagagggtgcctacccctccttcatcaa
aggtgtaaaactgccagggacaatgaacggagaagagttcttaaaataaa
agaaacccaccatgcatagaattgggacagcctgcttctaaaggcaaagt
aaatgaaaaataaaaattaaattgtattccttttaaggtgcaggcacacc
tggtacaatccccttagatcttcattctaaggtgttggaatcacggcaat
ttttgagtggagtggagtctaaatattcgaggatttttctttttctttcc


gaattcactgaagtatgaacgggcccatctgagattctttgacctgcttc
cagaaaatgttggaatgcctgtatacgcttccccacagtgacctcagaaa
tgctctttcctttccacacgcttgacattgctcagtgctctgatgtcctt
cgtttgcctctactttaaagctggcaggttcctctgccccatgccttccc
tatcttggcagttcttactggccttattgatctctatatcccttggtcct
ttggagactaaggaagctttggccatgagatcctctccttgaggctatct
aaattctcccccaagacaggtagaggccaagtttgtttcttctagttctt
gaaaggcctgttggactctgaatccacctgtcagtttcagaaaggaactg
gaagagtcagggctatgtgcttgttcataagctgtagtagaaaatggact
gggagggcactcttaaatccaaaggctcactagatgagcctttggtacat
tggccttgttgtcacagtacactgacaatgtgtgttcctaagaattgagt
taccttaaacaatcaagaaggccttcattgctggagtccattgctcgact
gagtgtctgtgttcagctgtctaagcatgagtcaagcaggttcctacctg
tctggaaatcccactcttatagaaggtagcagaaaaggttacagcagata
tctgttggctgcttacaccattcttagtactggaaatgcagttgggtcat
gttcatctctaccctctttggattttacagtcaaccttggacgtagaaac
ctttaggtaaaaaacaagtgcttctgtgaggtaggaacatgtgggaggca
tggtaatccctcctggacaacaccatctagttggagaactaaacaatgag
caggagctctggggagtagaggagatactgaaaatacttttaagtaaatg
ccatcctaactagagaggctagtctcggtgaggggactgggtagcagtgc
atgtaggagtcagctttaccagtagagcactgttcttgagaggggctgga
ctctatgaaagcatactttcttttcttgtttgaaaaggtgattgcctgat
ctttgattggagaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_41521714_41522855
seq2: B6Ng01-243M11.b_44_1193 (reverse)

seq1  GGAAAG-AAAAGAAAAATCTTTGGATATTTAGACT-CACT-CACTCAAAA  47
      |||||| |||||||||||| | | ||||||||||| |||| |||||||||
seq2  GGAAAGAAAAAGAAAAATCCTCGAATATTTAGACTCCACTCCACTCAAAA  50

seq1  ATTGCCGGTGATCCAAACACTTTAGAATGAAGATCT-AGGGGATTGTACC  96
      |||||| ||||| | ||||| ||||||||||||||| |||||||||||||
seq2  ATTGCC-GTGATTCCAACACCTTAGAATGAAGATCTAAGGGGATTGTACC  99

seq1  A-GTGTG-CTGCACCCTTAAAGGAATACAATTT-ATTTTTA-TTTTCATT  142
      | ||||| ||||||| | ||||||||||||||| ||||||| ||||||||
seq2  AGGTGTGCCTGCACCTTAAAAGGAATACAATTTAATTTTTATTTTTCATT  149

seq1  TACTTTGCCTTTAG-AGCAGGCTGTCCCAATTCTATGCATGGTGGGTTTC  191
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TACTTTGCCTTTAGAAGCAGGCTGTCCCAATTCTATGCATGGTGGGTTTC  199

seq1  TTTTATTTTAAGAACTCTTCTCCGTTCATTGTCCCTGGCAGTTTTACACC  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTAAGAACTCTTCTCCGTTCATTGTCCCTGGCAGTTTTACACC  249

seq1  TTTGATGAAGGAGGGGTAGGCACCCTCTCTCCCCTGCTCCCTGAGTCCCT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGAAGGAGGGGTAGGCACCCTCTCTCCCCTGCTCCCTGAGTCCCT  299

seq1  GTCCATTGAGAGGCATATTGCTTGCCTACTGCAGCTGGGAGTCAGTCTCT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTGAGAGGCATATTGCTTGCCTACTGCAGCTGGGAGTCAGTCTCT  349

seq1  ACTTCCAGTCCCATCAGAGATCTTCTGCCCAGTCCCCTTTCCCTGAACCC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAGTCCCATCAGAGATCTTCTGCCCAGTCCCCTTTCCCTGAACCC  399

seq1  ACACAATCGTCTCTGATCTTTGAGGATACCTCACCTACCCACACATCAGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATCGTCTCTGATCTTTGAGGATACCTCACCTACCCACACATCAGA  449

seq1  CAGCAAAGAACAACTGTGTTTTCCCCACAAGAGAAAGTTCCCGGTGTGAC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAGAACAACTGTGTTTTCCCCACAAGAGAAAGTTCCCGGTGTGAC  499

seq1  TCTTGCTTTCTGTTTACAGGGACTGCATGAAGATAGGAGAGGTGGATGGC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTTCTGTTTACAGGGACTGCATGAAGATAGGAGAGGTGGATGGC  549

seq1  AAGAAGATTGGCTGCACAGTTAGCCTTTTGGTTAGTGTCTGACTCCGTCT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGATTGGCTGCACAGTTAGCCTTTTGGTTAGTGTCTGACTCCGTCT  599

seq1  CCCCCTTCCTTCTAACCTCTGCTGCTCTTCACTGAAGCACTAAGTTTTGT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTCCTTCTAACCTCTGCTGCTCTTCACTGAAGCACTAAGTTTTGT  649

seq1  TTGTTTTTAATCTTCCATGTGCCCTTTTTCAGGATGTTTCTTACAAAAAT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTAATCTTCCATGTGCCCTTTTTCAGGATGTTTCTTACAAAAAT  699

seq1  GGAAAAGTGTTTTTTTTAAAGGGAAGATAGTGACCCTTAGGTTGAATGAA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGTGTTTTTTTTAAAGGGAAGATAGTGACCCTTAGGTTGAATGAA  749

seq1  GCCCAGAAAATCTTCAGCTCAGAACATTGCAGAATACTCCTGCTGGGCTG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAAAATCTTCAGCTCAGAACATTGCAGAATACTCCTGCTGGGCTG  799

seq1  GGCTGGGCTGGGCTGGGCTGGGCTGGGCTGGGCTGGGCTGGGCTGGGCTG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGCTGGGCTGGGCTGGGCTGGGCTGGGCTGGGCTGGGCTGGGCTG  849

seq1  GGCTGGGCTGGGCTGGGCTGGGCTGGTAGCAGTGAGCAGACCTCACAGAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGCTGGGCTGGGCTGGGCTGGTAGCAGTGAGCAGACCTCACAGAG  899

seq1  GGACTGCGTGCTGCTGTCTTCCCCTCTTGAGTTTCTTACTCAGTCTAGAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGCGTGCTGCTGTCTTCCCCTCTTGAGTTTCTTACTCAGTCTAGAT  949

seq1  GCTTTTCTTGGAAAAGCACAATATCGGCATTGAAGTCCCTTCATTTCTCT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCTTGGAAAAGCACAATATCGGCATTGAAGTCCCTTCATTTCTCT  999

seq1  GTTGACTATTCCTGTCTGCCCATCTTCTTCCTCTCCCTCACAATCTTTGT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACTATTCCTGTCTGCCCATCTTCTTCCTCTCCCTCACAATCTTTGT  1049

seq1  ATGTTTTCATAACAATTACTGAACTCTTATTTTCTAACCTGTGAAAATTT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCATAACAATTACTGAACTCTTATTTTCTAACCTGTGAAAATTT  1099

seq1  TCTGCTTTAATATGCTTAAGTTTCACTCACTGTCCCCTGCACATTGAATT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTAATATGCTTAAGTTTCACTCACTGTCCCCTGCACATTGAATT  1149

seq1  C  1142
      |
seq2  C  1150


seq1: chr12_41455342_41456467
seq2: B6Ng01-243M11.g_67_1182

seq1  GAATTCACTGAAGTATGAACGGGCCCATCTGAGATTCTTTGACCTGCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAAGTATGAACGGGCCCATCTGAGATTCTTTGACCTGCTTC  50

seq1  CAGAAAATGTTGGAATGCCTGTATACGCTTCCCCACAGTGACCTCAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATGTTGGAATGCCTGTATACGCTTCCCCACAGTGACCTCAGAAA  100

seq1  TGCTCTTTCCTTTCCACACGCTTGACATTGCTCAGTGCTCTGATGTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTTCCTTTCCACACGCTTGACATTGCTCAGTGCTCTGATGTCCTT  150

seq1  CGTTTGCCTCTACTTTAAAGCTGGCAGGTTCCTCTGCCCCATGCCTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGCCTCTACTTTAAAGCTGGCAGGTTCCTCTGCCCCATGCCTTCCC  200

seq1  TATCTTGGCAGTTCTTACTGGCCTTATTGATCTCTATATCCCTTGGTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGGCAGTTCTTACTGGCCTTATTGATCTCTATATCCCTTGGTCCT  250

seq1  TTGGAGACTAAGGAAGCTTTGGCCATGAGATCCTCTCCTTGAGGCTATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGACTAAGGAAGCTTTGGCCATGAGATCCTCTCCTTGAGGCTATCT  300

seq1  AAATTCTCCCCCAAGACAGGTAGAGGCCAAGTTTGTTTCTTCTAGTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTCCCCCAAGACAGGTAGAGGCCAAGTTTGTTTCTTCTAGTTCTT  350

seq1  GAAAGGCCTGTTGGACTCTGAATCCACCTGTCAGTTTCAGAAAGGAACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCCTGTTGGACTCTGAATCCACCTGTCAGTTTCAGAAAGGAACTG  400

seq1  GAAGAGTCAGGGCTATGTGCTTGTTCATAAGCTGTAGTAGAAAATGGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTCAGGGCTATGTGCTTGTTCATAAGCTGTAGTAGAAAATGGACT  450

seq1  GGGAGGGCACTCTTAAATCCAAAGGCTCACTAGATGAGCCTTTGGTACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGCACTCTTAAATCCAAAGGCTCACTAGATGAGCCTTTGGTACAT  500

seq1  TGGCCTTGTTGTCACAGTACACTGACAATGTGTGTTCCTAAGAATTGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTGTTGTCACAGTACACTGACAATGTGTGTTCCTAAGAATTGAGT  550

seq1  TACCTTAAACAATCAAGAAGGCCTTCATTGCTGGAGTCCATTGCTCGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTAAACAATCAAGAAGGCCTTCATTGCTGGAGTCCATTGCTCGACT  600

seq1  GAGTGTCTGTGTTCAGCTGTCTAAGCATGAGTCAAGCAGGTTCCTACCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCTGTGTTCAGCTGTCTAAGCATGAGTCAAGCAGGTTCCTACCTG  650

seq1  TCTGGAAATCCCACTCTTATAGAAGGTAGCAGAAAAGGTTACAGCAGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAATCCCACTCTTATAGAAGGTAGCAGAAAAGGTTACAGCAGATA  700

seq1  TCTGTTGGCTGCTTACACCATTCTTAGTACTGGAAATGCAGTTGGGTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGGCTGCTTACACCATTCTTAGTACTGGAAATGCAGTTGGGTCAT  750

seq1  GTTCATCTCTACCCTCTTTGGATTTTACAGTCAACCTTGGACGTAGAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCTCTACCCTCTTTGGATTTTACAGTCAACCTTGGACGTAGAAAC  800

seq1  CTTTAGGTAAAAAACAAGTGCTTCTGTGAGGTAGGAACATGTGGGAGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGTAAAAAACAAGTGCTTCTGTGAGGTAGGAACATGTGGGAGGCA  850

seq1  TGGTAATCCCTCCTGGACAACACCATCTAGTTGGAGAACTAAACAATGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATCCCTCCTGGACAACACCATCTAGTTGGAGAACTAAACAATGAG  900

seq1  CAGGAGCTCTGGGGAGTAGAGGAGATACTGAAAATACTTTTAAGTAAATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCTCTGGGGAGTAGAGGAGATACTGAAAATACTTTTAAGTAAATG  950

seq1  CCATCCTAAACTAGAGAGGCTAGTCTCGGTGAGGGGACTGGGTAGCAGTG  1000
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCT-AACTAGAGAGGCTAGTCTCGGTGAGGGGACTGGGTAGCAGTG  999

seq1  CATGTAGGAAGTCAGCTTTTACCAGTAGAGCACTGTTCCTGAGAGGGGCT  1050
      |||||||| ||||||| ||||||||||||||||||||| |||||||||||
seq2  CATGTAGG-AGTCAGC-TTTACCAGTAGAGCACTGTTCTTGAGAGGGGCT  1047

seq1  GGACTCTATGAAAAGCAATTAACCTTCCTTTTC-TGTTTGAAAAGGTGAT  1099
      |||||||||| ||||||  ||  ||| |||||| ||||||||||||||||
seq2  GGACTCTATG-AAAGCA--TA--CTTTCTTTTCTTGTTTGAAAAGGTGAT  1092

seq1  ATGCTTGATCTTTTGAAATGGAGAACC  1126
       ||| ||||||||   | |||||||||
seq2  -TGCCTGATCTTT--GATTGGAGAACC  1116


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