BAC Information

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BAC

Clone NameB6Ng01-243N08
Chromosome12 (Build37)
Map Location 9,240,256 - 9,335,276
singlet/doubletdoublet
Overlap genenone
Upstream gene1110057K04Rik, Gdf7, Hs1bp3, BC106175, Rhob, Slc7a15, LOC100043154, Pum2, F730043H23, Sdc1, Laptm4a, Matn3, Wdr35, Ttc32
Downstream geneLOC633030, LOC100042238, Osr1, LOC382567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243N08.bB6Ng01-243N08.g
ACCGA053115GA053116
length1,1341,072
definitionB6Ng01-243N08.b B6Ng01-243N08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,334,162 - 9,335,276)(9,240,256 - 9,241,320)
sequence
gaattctcaactgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacaaccttattcaccagggaaatgcaaatcaaaacaaccttgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgaggatgtggagaaagaggaacactcccccattgttggtg
ggattgcaagcttgtacaaccactctggaagtcagtctggaggttcctca
gaaaattggacataatactaccggaaaatccagcaatgcctctcctgggc
atatacccagaaaaagttgcaactggcaataagagcagaacatttttgaa
tgtgtcttaaaaaaacaaaaaacactgtatgtcatggcagacagtagtct
caaacctaagccatgaatgccttagattcattatacattggagtttgaat
ttgagctgtgaattcagaaaacttttactgtcaaggtttctgagctcccg
tgctcaatttcaaatccccctttgtgctagtagtgactctttcttgtcta
agccaaatactcattgtctcttttcagagaaaatcatgtcctagcctagg
cttattcatagacaactaccaaaagtcaggtaagccaggagataactagg
ctattgatacaggtgtacactagtctaaaagacaatcatatttgctttca
gaatgtaaactagaatttacccccgtctccaatcttgattccaatctaga
gtaaaactgggaagggcccaataactcatgttattgtcacccccccccat
catccatcacagatgccaaataaagtagactgagcatttcaatggctgtg
tctcatccaatcctcatttataaacaacaagaactatacttccctgatca
ataatgcacccagaaaccatccataaatgggaagacccagagctagaata
caagcttcttcctgcaactctccctactacattagagaatgccatgatat
acccacagcagggtctgccaacccttagagactagctgtctaaacagcac
cacttcaagacccacagccatttacagtttggttactgaatgaattttca
tttttaggagagagcagttagacaccgaatttaa
gaattccaaatgattcatgtaaatcctctgcccgatcctcaagtaacttc
atggtggagaaagtcaacagacatgactctagccaggtgatcaaggcccg
tggcagttgtgtttcttaagtggtgcatcagctctgcagtcttctttcca
aaattcaaaacaaataggagaatatttttaccaaatatgtgacccttact
catcaaagctgtcatgatcatcagaaacaaggaaactgtcacaggaaaag
ctgcctatgggaaaatcgtagttaaattcaacatatcctagagaggctcc
tggaccaaaaaaatgtcactagggaaaaagtaagtgaagcactatcagaa
atgagagtaatggaaatgactgggttcatttactataatgaatatactgt
aataatattggatactcataagaagaagctttgtaaagatatgggagctc
tatgctatctttatgatgtttggatgaatctaattaatgtctatttgaaa
atgaacatttcagcaagtagactgaagaagaaagcaaaaagatttatgga
ttctcactttttatttgtcactatgtgtgtgtgtgtgtgtgtgtgtgcac
atgtatgtggatgccagaggtagatgttaggagtctttctctacaactct
ccaccttatatttcttaaagatttgttttcatttgtgtacatgtgtctat
gtctgtctgagtgtgtggcacatgtgtgtagacatctgcagaggccagaa
gagggcagcggtttcccttggaactaaagaaaattctgaaaacggaactt
acatcctctgcgagaatgctaagtgttcctgaccattgggccatctctgc
agctctaaccaacatattttttcagatagtgtatcttatgaattggctag
attggtggctggccagcaagttctgagtgtcttccctcccctgaatcacc
tatactagaatacagtcgtgtagcaccatgccagggtgctacacgagtgc
tggggtgtgaaacttagttctcgctctgtaaggctagcagttcgctcagt
tgacttttctgcagccccactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_9334162_9335276
seq2: B6Ng01-243N08.b_71_1182 (reverse)

seq1  TTAAA-TCGGTGTGTCTACTGCTCTCT-CTAAAAATGAAAAATCATTTCA  48
      ||||| ||||||| |  |||||||||| ||||||||||||| ||| ||||
seq2  TTAAATTCGGTGTCT-AACTGCTCTCTCCTAAAAATGAAAATTCA-TTCA  48

seq1  GTACCCAAACTGTAAATGGGCTGTGGGTCTTGAAGTGGTGCTGTTTAGAC  98
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTAACCAAACTGTAAAT-GGCTGTGGGTCTTGAAGTGGTGCTGTTTAGAC  97

seq1  AGCTAGTCTTCCTAAGGGGTTGGCAGACCCTGCTGTGGGTATTATCATGG  148
      |||||||||  |||| ||||||||||||||||||||||||| ||||||||
seq2  AGCTAGTCT--CTAA-GGGTTGGCAGACCCTGCTGTGGGTA-TATCATGG  143

seq1  CATTCTCTAATGTAGTAGGGAGAGTTGCAGGAAGAAGCTTGTATTCTAGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCTAATGTAGTAGGGAGAGTTGCAGGAAGAAGCTTGTATTCTAGC  193

seq1  TCTGGGTCTT-CCATTTATGGATGGTTTCTGGGTGCATTATTGATCAGGG  247
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTCTTCCCATTTATGGATGGTTTCTGGGTGCATTATTGATCAGGG  243

seq1  AAGTATAGTTCTTGTTGTTTATAAATGAGGATTGGATGAGACACAGCCAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATAGTTCTTGTTGTTTATAAATGAGGATTGGATGAGACACAGCCAT  293

seq1  TGAAATGCTCAGTCTACTTTATTTGGCATCTGTGATGGATGAT-AAACAT  346
      |||||||||||||||||||||||||||||||||||||||||||       
seq2  TGAAATGCTCAGTCTACTTTATTTGGCATCTGTGATGGATGATGGGGGGG  343

seq1  GGTGACAATAACATGAGTTATTGGGCCCTTCCCAGTTTTACTCTAGATTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACAATAACATGAGTTATTGGGCCCTTCCCAGTTTTACTCTAGATTG  393

seq1  GAATCAAGATTGGAGACGGGGGTAAATTCTAGTTTACATTCTGAAAGCAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAAGATTGGAGACGGGGGTAAATTCTAGTTTACATTCTGAAAGCAA  443

seq1  ATATGATTGTCTTTTAGACTAGTGTACACCTGTATCAATAGCCTAGTTAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATTGTCTTTTAGACTAGTGTACACCTGTATCAATAGCCTAGTTAT  493

seq1  CTCCTGGCTTACCTGACTTTTGGTAGTTGTCTATGAATAAGCCTAGGCTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGCTTACCTGACTTTTGGTAGTTGTCTATGAATAAGCCTAGGCTA  543

seq1  GGACATGATTTTCTCTGAAAAGAGACAATGAGTATTTGGCTTAGACAAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGATTTTCTCTGAAAAGAGACAATGAGTATTTGGCTTAGACAAGA  593

seq1  AAGAGTCACTACTAGCACAAAGGGGGATTTGAAATTGAGCACGGGAGCTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCACTACTAGCACAAAGGGGGATTTGAAATTGAGCACGGGAGCTC  643

seq1  AGAAACCTTGACAGTAAAAGTTTTCTGAATTCACAGCTCAAATTCAAACT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCTTGACAGTAAAAGTTTTCTGAATTCACAGCTCAAATTCAAACT  693

seq1  CCAATGTATAATGAATCTAAGGCATTCATGGCTTAGGTTTGAGACTACTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTATAATGAATCTAAGGCATTCATGGCTTAGGTTTGAGACTACTG  743

seq1  TCTGCCATGACATACAGTGTTTTTTGTTTTTTTAAGACACATTCAAAAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCATGACATACAGTGTTTTTTGTTTTTTTAAGACACATTCAAAAAT  793

seq1  GTTCTGCTCTTATTGCCAGTTGCAACTTTTTCTGGGTATATGCCCAGGAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCTCTTATTGCCAGTTGCAACTTTTTCTGGGTATATGCCCAGGAG  843

seq1  AGGCATTGCTGGATTTTCCGGTAGTATTATGTCCAATTTTCTGAGGAACC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTGCTGGATTTTCCGGTAGTATTATGTCCAATTTTCTGAGGAACC  893

seq1  TCCAGACTGACTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAACAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACTGACTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAACAA  943

seq1  TGGGGGAGTGTTCCTCTTTCTCCACATCCTCACCAGCATCTGCTGTCACC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAGTGTTCCTCTTTCTCCACATCCTCACCAGCATCTGCTGTCACC  993

seq1  TGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAAGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAAGG  1043

seq1  TTGTTTTGATTTGCATTTCCCTGGTGAATAAGGTTGTTGAACATTTTTTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGATTTGCATTTCCCTGGTGAATAAGGTTGTTGAACATTTTTTC  1093

seq1  AGGTGCTTCTCTGCCATTC  1115
      |||||||||||||||||||
seq2  AGGTGCTTCTCTGCCATTC  1112

seq1: chr12_9240256_9241320
seq2: B6Ng01-243N08.g_76_1140

seq1  AAATGATTCATGTAAATCCTCTGCCCGATCCTCAAGTAACTTCATGGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATTCATGTAAATCCTCTGCCCGATCCTCAAGTAACTTCATGGTGG  50

seq1  AGAAAGTCAACAGACATGACTCTAGCCAGGTGATCAAGGCCCGTGGCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTCAACAGACATGACTCTAGCCAGGTGATCAAGGCCCGTGGCAGT  100

seq1  TGTGTTTCTTAAGTGGTGCATCAGCTCTGCAGTCTTCTTTCCAAAATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTCTTAAGTGGTGCATCAGCTCTGCAGTCTTCTTTCCAAAATTCA  150

seq1  AAACAAATAGGAGAATATTTTTACCAAATATGTGACCCTTACTCATCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATAGGAGAATATTTTTACCAAATATGTGACCCTTACTCATCAAA  200

seq1  GCTGTCATGATCATCAGAAACAAGGAAACTGTCACAGGAAAAGCTGCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCATGATCATCAGAAACAAGGAAACTGTCACAGGAAAAGCTGCCTA  250

seq1  TGGGAAAATCGTAGTTAAATTCAACATATCCTAGAGAGGCTCCTGGACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAATCGTAGTTAAATTCAACATATCCTAGAGAGGCTCCTGGACCA  300

seq1  AAAAAATGTCACTAGGGAAAAAGTAAGTGAAGCACTATCAGAAATGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGTCACTAGGGAAAAAGTAAGTGAAGCACTATCAGAAATGAGAG  350

seq1  TAATGGAAATGACTGGGTTCATTTACTATAATGAATATACTGTAATAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGAAATGACTGGGTTCATTTACTATAATGAATATACTGTAATAATA  400

seq1  TTGGATACTCATAAGAAGAAGCTTTGTAAAGATATGGGAGCTCTATGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATACTCATAAGAAGAAGCTTTGTAAAGATATGGGAGCTCTATGCTA  450

seq1  TCTTTATGATGTTTGGATGAATCTAATTAATGTCTATTTGAAAATGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATGATGTTTGGATGAATCTAATTAATGTCTATTTGAAAATGAACA  500

seq1  TTTCAGCAAGTAGACTGAAGAAGAAAGCAAAAAGATTTATGGATTCTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCAAGTAGACTGAAGAAGAAAGCAAAAAGATTTATGGATTCTCAC  550

seq1  TTTTTATTTGTCACTATGTGTGTGTGTGTGTGTGTGTGTGCACATGTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTGTCACTATGTGTGTGTGTGTGTGTGTGTGTGCACATGTATG  600

seq1  TGGATGCCAGAGGTAGATGTTAGGAGTCTTTCTCTACAACTCTCCACCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCCAGAGGTAGATGTTAGGAGTCTTTCTCTACAACTCTCCACCTT  650

seq1  ATATTTCTTAAAGATTTGTTTTCATTTGTGTACATGTGTCTATGTCTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTTAAAGATTTGTTTTCATTTGTGTACATGTGTCTATGTCTGTC  700

seq1  TGAGTGTGTGGCACATGTGTGTAGACATCTGCAGAGGCCAGAAGAGGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTGTGGCACATGTGTGTAGACATCTGCAGAGGCCAGAAGAGGGCA  750

seq1  GCGG-TTCCCTTGGAACTAAAGAAAATTCTGAAAACGGAACTTACATCCT  799
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTTTCCCTTGGAACTAAAGAAAATTCTGAAAACGGAACTTACATCCT  800

seq1  CTGCGAGAATGCTAAGTGTTCCTGACCATTGGGCCATCTCTGCAGCTCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGAGAATGCTAAGTGTTCCTGACCATTGGGCCATCTCTGCAGCTCTA  850

seq1  ACCAACATATTTTTTCAGATAGTGTATCTTATGAATTGGCTAGATTGGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACATATTTTTTCAGATAGTGTATCTTATGAATTGGCTAGATTGGTG  900

seq1  GCTGGCCAGCAAGTTCTGAGTGTCTTCCCTCCCCTGAATCACCTATACTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCAGCAAGTTCTGAGTGTCTTCCCTCCCCTGAATCACCTATACTA  950

seq1  GAATACAGTCGTGTAGCACCATGCCAGGGTGCTACACGAGTGCTGGGGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAGTCGTGTAGCACCATGCCAGGGTGCTACACGAGTGCTGGGGTG  1000

seq1  TG-AACTTAGGTTCTCGCTCCTGT-AGGCTAGGCAGTTCGCTCAGTGAAC  1047
      || |||||| ||||||||| |||| |||||| ||||||||||||||  ||
seq2  TGAAACTTA-GTTCTCGCT-CTGTAAGGCTA-GCAGTTCGCTCAGTTGAC  1047

seq1  TTTTCTGCAGCCCCACTT  1065
      ||||||||||||||||||
seq2  TTTTCTGCAGCCCCACTT  1065