BAC Information

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BAC

Clone NameB6Ng01-246K13
Chromosome12 (Build37)
Map Location 8,785,895 - 8,940,936
singlet/doubletdoublet
Overlap geneSdc1, Laptm4a
Upstream geneEG668388, Apob, 1110057K04Rik, Gdf7, Hs1bp3, BC106175, Rhob, Slc7a15, LOC100043154, Pum2, F730043H23
Downstream geneMatn3, Wdr35, Ttc32, LOC633030, LOC100042238, Osr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246K13.bB6Ng01-246K13.g
ACCGA055217GA055218
length1,1081,112
definitionB6Ng01-246K13.b B6Ng01-246K13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,939,813 - 8,940,936)(8,785,895 - 8,786,993)
sequence
gaattcacacaacttgggtttcgtgagatgagggcgtcactggaaagaga
agttgctgtttgcttcagacagatgagttactcataggaaaccacagatg
tacctcttgctttggtaagattacaacctgaaattcaaaggtctccatta
atcccaccccagggtctcacacctttaatccatggcctcctccagtttgc
cctctctcccctacacacatctattcctctcaacttctaagtgtgcgtta
acctatggtcaccattctctacagaacacacccaaataatccccaacagt
atctgaccatacttgactgggtgagcatcttcacaagctgatcctgtgat
cctgcgactctggacagacaggaataaactaaaggagacggggctgtgga
gagctggctcagcctgctgctctagcagatcagtccccagtccccatgcc
aggctgctcacaatcgcgcgctttaactcctgctgcagaaactggacacc
tctgacttccaggcacctgcactcacatgcacacactcctacacatacac
ataactgaagacttaaaaagaaacaaaagggcaccaaaaatgaagatatt
agatatttatacaaataatcatgtcactgagcattataaacgcaaccagt
atttaacatgaattactgtgtcatatcagagtacctccattgttaaggat
ttaaaggttcttcctactgaaagactaagatataaagtaagaccctgtct
caaaaactggaggaaggtgctaataagactctaaaatttggtttattatt
atttgagaaggagggggttcaaataaaaagaaactactagtgaaaaatat
gccaaaggctattactccttgtcacttctctcagagtccttgtcacgagg
atgtatttaaaaaggatcagaacatttccacttagaacaataacacgaca
cagtacacatgcgcatcatcctatgctgtatacagaatacacaggactct
tcttggctcctggaaatagttatctgtgagacaaaaaagtacttacaaag
aagatgaaagaagaaagaaaattaggagagagagggaggagagagaatgg
gggaagga
gaattcactggttggggacttgagtgtatcagaggggcacaaagtaacat
taactctggtatcctctgcagcaaatcggagatcccctctcctaggcgag
ttctcagtggatatggaggtcaggtttgggcttgtagggccccagcaaga
gtcgttgatgtcactccagcttctcccgaggaagatgagggtgctgtgtt
gggatcacatctctccctgaatggcatgttggggagggatggagcccttg
cttctgacccctaagcttggtctttaggtggccacagtctctgggttctg
tcctacctccctgcccttgtgtgcttcaaaggcatgctaaagggactctc
ggccattccgaatgggcacagtgttccttctgttctcccacccccagaag
gaggcaggcctggattgtagattcctagaagtaagtggccctgagcatgc
tgttgatgaacctggaaccaggcaggctgggcatcctaggacctgtcttt
ccatagaagtctgaatcagtctacctttgggactgagtaaggggctcctc
acatatcagctggctagtccatcttggctgatctaaaccacattaggctg
aagagaagcatggtgtacagtctggtccacccgaaccacatactggcttt
atcagttctcgtataattttgcaggtaactttttagctctaagcctgtct
cctcatctgtgaaatcgggtccctcatatcctgcctagaaagggcttttg
aaaagattatgaagtagtatgccgagtggttggggttctctccttgactg
gagcaagtctctaggagtactaaggatagcctgcttgtgtgcagcacccc
cagggactgtgcctgagtaggagggtacagagtcttcatgtgaatggccc
ttctggtctgcccgaagttagtgttgatgtcatagagtctacaaaacatg
cctttttgtctttcctcagagttcaaggcttttctggcagaccagaacat
ttcatcttccactggagcctcttattgtgagaactggcctccttggctgg
acttgtggtgggcttgacctggtcgaatggtaaacttagaacaccttggc
acctgggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_8939813_8940936
seq2: B6Ng01-246K13.b_47_1154 (reverse)

seq1  TCCTTCCCCCTTTCTCTTCTCCTCCCTCCTCCTCTTCCCTATTTTTCTTT  50
      |||||||||| ||||| ||||||||||    ||||  |||| ||||||||
seq2  TCCTTCCCCCATTCTC-TCTCCTCCCT----CTCTCTCCTAATTTTCTTT  45

seq1  CTTTCTTTCTATCTTTCTTTTGTTAAGTACTTTTTTTGTCTTCACAGATA  100
      | ||||||| ||| ||||||   ||||||| ||||||||| |||||||||
seq2  C-TTCTTTC-ATC-TTCTTT--GTAAGTAC-TTTTTTGTC-TCACAGATA  88

seq1  ACTATTTTCCAGGAGCCAAGAAGAGTCCTGTGTATTCTGTAATACAGCAT  150
      |||| ||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACTA-TTTCCAGGAGCCAAGAAGAGTCCTGTGTATTCTGT-ATACAGCAT  136

seq1  AGGATGATGCGCATGTGTACTGTGTCGTGTTATTGTTCTAAGTGGAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGATGCGCATGTGTACTGTGTCGTGTTATTGTTCTAAGTGGAAATG  186

seq1  TTTCTGATCCTTTTTAAATACATCCTCGTGACAAGGACTCTGAGAGAAGT  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTCTGATCCTTTTTAAATACATCCTCGTGACAAGGACTCTGAGAGAAGT  235

seq1  GACAAGGAGTAATAGCCTTTTGGCATATTTTTCACTAGTAGTTTCTTTTT  300
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GACAAGGAGTAATAGCC-TTTGGCATATTTTTCACTAGTAGTTTCTTTTT  284

seq1  ATTTGAACCCCCTCCTTCTCAAATAATAATAAACCAAATTTTAGAGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAACCCCCTCCTTCTCAAATAATAATAAACCAAATTTTAGAGTCTT  334

seq1  ATTAGCACCTTCCTCCAGTTTTTGAGACAGGGTCTTACTTTATATCTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCACCTTCCTCCAGTTTTTGAGACAGGGTCTTACTTTATATCTTAG  384

seq1  TCTTTCAGTAGGAAGAACCTTTAAATCCTTAACAATGGAGGTACTCTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAGTAGGAAGAACCTTTAAATCCTTAACAATGGAGGTACTCTGAT  434

seq1  ATGACACAGTAATTCATGTTAAATACTGGTTGCGTTTATAATGCTCAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACAGTAATTCATGTTAAATACTGGTTGCGTTTATAATGCTCAGTG  484

seq1  ACATGATTATTTGTATAAATATCTAATATCTTCATTTTTGGTGCCCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATTATTTGTATAAATATCTAATATCTTCATTTTTGGTGCCCTTTT  534

seq1  GTTTCTTTTTAAGTCTTCAGTTATGTGTATGTGTAGGAGTGTGTGCATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTTTAAGTCTTCAGTTATGTGTATGTGTAGGAGTGTGTGCATGT  584

seq1  GAGTGCAGGTGCCTGGAAGTCAGAGGTGTCCAGTTTCTGCAGCAGGAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCAGGTGCCTGGAAGTCAGAGGTGTCCAGTTTCTGCAGCAGGAGTT  634

seq1  AAAGCGCGCGATTGTGAGCAGCCTGGCATGGGGACTGGGGACTGATCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCGCGCGATTGTGAGCAGCCTGGCATGGGGACTGGGGACTGATCTGC  684

seq1  TAGAGCAGCAGGCTGAGCCAGCTCTCCACAGCCCCGTCTCCTTTAGTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCAGCAGGCTGAGCCAGCTCTCCACAGCCCCGTCTCCTTTAGTTTA  734

seq1  TTCCTGTCTGTCCAGAGTCGCAGGATCACAGGATCAGCTTGTGAAGATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTCTGTCCAGAGTCGCAGGATCACAGGATCAGCTTGTGAAGATGC  784

seq1  TCACCCAGTCAAGTATGGTCAGATACTGTTGGGGATTATTTGGGTGTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCAGTCAAGTATGGTCAGATACTGTTGGGGATTATTTGGGTGTGTT  834

seq1  CTGTAGAGAATGGTGACCATAGGTTAACGCACACTTAGAAGTTGAGAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAGAATGGTGACCATAGGTTAACGCACACTTAGAAGTTGAGAGGA  884

seq1  ATAGATGTGTGTAGGGGAGAGAGGGCAAACTGGAGGAGGCCATGGATTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGTGTGTAGGGGAGAGAGGGCAAACTGGAGGAGGCCATGGATTAA  934

seq1  AGGTGTGAGACCCTGGGGTGGGATTAATGGAGACCTTTGAATTTCAGGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGAGACCCTGGGGTGGGATTAATGGAGACCTTTGAATTTCAGGTT  984

seq1  GTAATCTTACCAAAGCAAGAGGTACATCTGTGGTTTCCTATGAGTAACTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCTTACCAAAGCAAGAGGTACATCTGTGGTTTCCTATGAGTAACTC  1034

seq1  ATCTGTCTGAAGCAAACAGCAACTTCTCTTTCCAGTGACGCCCTCATCTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTGAAGCAAACAGCAACTTCTCTTTCCAGTGACGCCCTCATCTC  1084

seq1  ACGAAACCCAAGTTGTGTGAATTC  1124
      ||||||||||||||||||||||||
seq2  ACGAAACCCAAGTTGTGTGAATTC  1108

seq1: chr12_8785895_8786993
seq2: B6Ng01-246K13.g_68_1179

seq1  GAATTCACTGGTTGGGGACTTGAGTGTATCAGAGGGGCACAAAGTAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGTTGGGGACTTGAGTGTATCAGAGGGGCACAAAGTAACAT  50

seq1  TAACTCTGGTATCCTCTGCAGCAAATCGGAGATCCCCTCTCCTAGGCGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTGGTATCCTCTGCAGCAAATCGGAGATCCCCTCTCCTAGGCGAG  100

seq1  TTCTCAGTGGATATGGAGGTCAGGTTTGGGCTTGTAGGGCCCCAGCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTGGATATGGAGGTCAGGTTTGGGCTTGTAGGGCCCCAGCAAGA  150

seq1  GTCGTTGATGTCACTCCAGCTTCTCCCGAGGAAGATGAGGGTGCTGTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTTGATGTCACTCCAGCTTCTCCCGAGGAAGATGAGGGTGCTGTGTT  200

seq1  GGGATCACATCTCTCCCTGAATGGCATGTTGGGGAGGGATGGAGCCCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCACATCTCTCCCTGAATGGCATGTTGGGGAGGGATGGAGCCCTTG  250

seq1  CTTCTGACCCCTAAGCTTGGTCTTTAGGTGGCCACAGTCTCTGGGTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGACCCCTAAGCTTGGTCTTTAGGTGGCCACAGTCTCTGGGTTCTG  300

seq1  TCCTACCTCCCTGCCCTTGTGTGCTTCAAAGGCATGCTAAAGGGACTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCTCCCTGCCCTTGTGTGCTTCAAAGGCATGCTAAAGGGACTCTC  350

seq1  GGCCATTCCGAATGGGCACAGTGTTCCTTCTGTTCTCCCACCCCCAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTCCGAATGGGCACAGTGTTCCTTCTGTTCTCCCACCCCCAGAAG  400

seq1  GAGGCAGGCCTGGATTGTAGATTCCTAGAAGTAAGTGGCCCTGAGCATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGCCTGGATTGTAGATTCCTAGAAGTAAGTGGCCCTGAGCATGC  450

seq1  TGTTGATGAACCTGGAACCAGGCAGGCTGGGCATCCTAGGACCTGTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATGAACCTGGAACCAGGCAGGCTGGGCATCCTAGGACCTGTCTTT  500

seq1  CCATAGAAGTCTGAATCAGTCTACCTTTGGGACTGAGTAAGGGGCTCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGAAGTCTGAATCAGTCTACCTTTGGGACTGAGTAAGGGGCTCCTC  550

seq1  ACATATCAGCTGGCTAGTCCATCTTGGCTGATCTAAACCACATTAGGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCAGCTGGCTAGTCCATCTTGGCTGATCTAAACCACATTAGGCTG  600

seq1  AAGAGAAGCATGGTGTACAGTCTGGTCCACCCGAACCACATACTGGCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGCATGGTGTACAGTCTGGTCCACCCGAACCACATACTGGCTTT  650

seq1  ATCAGTTCTCGTATAATTTTGCAGGTAACTTTTTAGCTCTAAGCCTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTCTCGTATAATTTTGCAGGTAACTTTTTAGCTCTAAGCCTGTCT  700

seq1  CCTCATCTGTGAAATCGGGTCCCTCATATCCTGCCTAG-AAGGGCTTTTG  749
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCTCATCTGTGAAATCGGGTCCCTCATATCCTGCCTAGAAAGGGCTTTTG  750

seq1  AAAAGATTAATGAAGTAGTATGCCGAGTGGTTGGGGTTCTCTCCTTGACT  799
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATT-ATGAAGTAGTATGCCGAGTGGTTGGGGTTCTCTCCTTGACT  799

seq1  GGAGCAAGTCTCTAGGAGTACTAAGGATAGCCTGC-TGTGTGCAGCACCC  848
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGAGCAAGTCTCTAGGAGTACTAAGGATAGCCTGCTTGTGTGCAGCACCC  849

seq1  CCAGGGACTGTGCCTGAGTAGGAGGGTACAGAGTCTTCATGTGAATGGCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGACTGTGCCTGAGTAGGAGGGTACAGAGTCTTCATGTGAATGGCC  899

seq1  CTTCTGGTCTTGCCCCGAAGTTAGTGTTGATGTCATAGAGTCTAC-AAAC  947
      ||||||||||   |||||||||||||||||||||||||||||||| ||||
seq2  CTTCTGGTCT--GCCCGAAGTTAGTGTTGATGTCATAGAGTCTACAAAAC  947

seq1  ATGCC-TTTTGTCCTTCCTCAGAAGTCCAAGCCTTTCCTGGCAGACCAG-  995
      ||||| ||||||| |||||||| ||| |||| |||| |||||||||||| 
seq2  ATGCCTTTTTGTCTTTCCTCAG-AGTTCAAGGCTTTTCTGGCAGACCAGA  996

seq1  ACA-TTCATC-TCCACT-GAGCCTCT--ATGTGAG-ACTGG-CTCC-TGG  1037
      ||| |||||| |||||| ||||||||   |||||| ||||| |||| |||
seq2  ACATTTCATCTTCCACTGGAGCCTCTTATTGTGAGAACTGGCCTCCTTGG  1046

seq1  CCTGAGCTGT-GTGGGC-TGAGCTGG-CGAATGGGAAAACTAG-ACACCT  1083
      |  ||  ||| |||||| ||| |||| ||||||| |||  ||| ||||||
seq2  CTGGACTTGTGGTGGGCTTGACCTGGTCGAATGGTAAACTTAGAACACCT  1096

seq1  GGGCACCTGGGTGGGG  1099
       |||||||||||||||
seq2  TGGCACCTGGGTGGGG  1112