BAC Information

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BAC

Clone NameB6Ng01-246M17
Chromosome12 (Build37)
Map Location 57,521,406 - 57,698,453
singlet/doubletdoublet
Overlap geneE030019B13Rik, Titf1, LOC100039993
Upstream geneLOC100039871, Nfkbia, Aldoa-ps1, Insm2, Garnl1, Brms1l, LOC100039915, LOC382600, LOC382601, Mbip, EG621837
Downstream geneNkx2-9, Pax9, Slc25a21, AU021838, LOC100040044, Foxa1, 4921506M07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246M17.bB6Ng01-246M17.g
ACCGA055309GA055310
length1,1141,168
definitionB6Ng01-246M17.b B6Ng01-246M17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,521,406 - 57,522,511)(57,697,301 - 57,698,453)
sequence
gaattcaatggatccacggcctccacagatatgtttgggaagttctcgga
gctacaattgtctgtgtctgattacctcctgcctctgaaattgctaggtc
agtaagcaaaaggaggctgatttaaagtcccatctattctaagaccctca
gaggcagggcctctcggggttgattcaaaaggagcattcttgttacagcc
cccccccccacgcttttccatttctgtctattccatgagcaggtggccac
tacctgtagctgataattacaggctttatgtatgccgactatgaaagggt
cttgtctgtggtcagggctgacagggaagtatgagacatatgtttgaccc
cataaaaggagggaaattctccttttgttatgggccatagggttttcaag
gctactacccatggaaaatgcttgccatgttcaagggctaaaggccacac
acacaatcttttaaagagcctgtcagcacagagtccattcactgaatgcc
tcggctgtcccctgcaattggcaggtagagtcctattatgtggccccctc
tttgtaagaggcaaaatttctatagcgaccatcacggaaaatgtttaata
cctttaaatttcaataatattataacgataaagaaaatgctcctatgtgt
ggactgggtggataaaaacagattttgatctttggggaggcatgttcttt
tgagcgatagagtaagacatctgttccgacaatgcttaagtgaatggcac
gaaagttctgggcaggaaggttgcaagaaaatactctgaagctgcaagaa
gaatggaaacagagaaatggcctagacgggggtaattgtgtcttctttct
cctcctttcccattttcacatccgctggtaactacctaaccagtgtttgc
cctaattattagaggtatttgaataatgttaataattatatgagtattat
ttaaaaatgtatttaatggtaggacgctaattatcatggggtgtgtctcc
actgtgacggcaatttgctttttctgggttcttaaaatgattgtttttaa
ggacgtgctgaaaatgcgtgtttctttgtacacttacaggatgttgggaa
gaactacaaacgaa
gaattccactgccaatataataaaactttaaatcttccagggactagaga
cacattgtgttgatataaacataaagaatgatattttcttaaaatttata
catatatgaaaagaattagcagataataggaagacaatgcctcaactaga
cctcttatgctaataagtaaaactcccagtaacaggagtaggttatacct
tattgtgttgttggccaaagggtcccatgtccaggagtggttggtcaaca
caaaatgaagtcaatgtttttgtctgtttgtttgattgtttgtggacttc
ttgtttcttttggcatttattttggctctgttttgacttttgttttttgt
gggagtctatttgtttatttgtttgtttttgtcctttttccttttggttg
gtggtggttgtttaaattcagatctgataaagctaacaaaccaggggatc
attgatgtagaaaaaaaaatggcttgttgcagttttcaagaagaagaaga
agactcaaaataagacagagaaccctgtgggaagcacagggacttcctag
aaacagagactgtatcagaagagaatgggaagaacccacactggactttc
atgaaagggatggagtgcacaggacaagatcctggatgcttgaataccag
gcaagtcagagggagctggcttgtagaggacccttttctcctgcatataa
agacgtcctcttgaggtaagtaagttgtttgctgtccttgggtactggca
aaaggcaggcctcgaagcctcataaaacatagaaaacaaagtatgtaaga
caggcacaactatggcaacctgactgtctcaaaaaggcttaatagcactg
ggggatgaatgagacatgggagtctggagcatttggtccagatgtgagtc
cagaggctgagcttcagagaacagcagtgaatgggtcacctttccctctc
agctgggttgtgactacctcctctctactttgaattttccttcttccaca
atacatagacatcagtgttatataacatgatccacattatattgcctttt
tttttacacactggaaaacctaagtcaagtggcctactagaacatggttg
gaatctaggttctccacttcctatagttcaaaattacagctattaggtct
cacattttcctttaccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_57521406_57522511
seq2: B6Ng01-246M17.b_47_1160

seq1  GAATTCAATGGATCCACGGCCTCCACAGATATGTTTGGGAAGTTCTCGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGATCCACGGCCTCCACAGATATGTTTGGGAAGTTCTCGGA  50

seq1  GCTACAATTGTCTGTGTCTGATTACCTCCTGCCTCTGAAATTGCTAGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAATTGTCTGTGTCTGATTACCTCCTGCCTCTGAAATTGCTAGGTC  100

seq1  AGTAAGCAAAAGGAGGCTGATTTAAAGTCCCATCTATTCTAAGACCCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGCAAAAGGAGGCTGATTTAAAGTCCCATCTATTCTAAGACCCTCA  150

seq1  GAGGCAGGGCCTCTCGGGGTTGATTCAAAAGGAGCATTCTTGTTACAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGGCCTCTCGGGGTTGATTCAAAAGGAGCATTCTTGTTACAGCC  200

seq1  CCCCCCCCCACGCTTTTCCATTTCTGTCTATTCCATGAGCAGGTGGCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCACGCTTTTCCATTTCTGTCTATTCCATGAGCAGGTGGCCAC  250

seq1  TACCTGTAGCTGATAATTACAGGCTTTATGTATGCCGACTATGAAAGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTAGCTGATAATTACAGGCTTTATGTATGCCGACTATGAAAGGGT  300

seq1  CTTGTCTGTGGTCAGGGCTGACAGGGAAGTATGAGACATATGTTTGACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTGTGGTCAGGGCTGACAGGGAAGTATGAGACATATGTTTGACCC  350

seq1  CATAAAAGGAGGGAAATTCTCCTTTTGTTATGGGCCATAGGGTTTTCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAGGAGGGAAATTCTCCTTTTGTTATGGGCCATAGGGTTTTCAAG  400

seq1  GCTACTACCCATGGAAAATGCTTGCCATGTTCAAGGGCTAAAGGCCACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTACCCATGGAAAATGCTTGCCATGTTCAAGGGCTAAAGGCCACAC  450

seq1  ACACAATCTTTTAAAGAGCCTGTCAGCACAGAGTCCATTCACTGAATGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATCTTTTAAAGAGCCTGTCAGCACAGAGTCCATTCACTGAATGCC  500

seq1  TCGGCTGTCCCCTGCAATTGGCAGGTAGAGTCCTATTATGTGGCCCCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTGTCCCCTGCAATTGGCAGGTAGAGTCCTATTATGTGGCCCCCTC  550

seq1  TTTGTAAGAGGCAAAATTTCTATAGCGACCATCACGGAAAATGTTTAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGAGGCAAAATTTCTATAGCGACCATCACGGAAAATGTTTAATA  600

seq1  CCTTTAAATTTCAATAATATTATAACGATAAAGAAAATGCTCCTATGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAAATTTCAATAATATTATAACGATAAAGAAAATGCTCCTATGTGT  650

seq1  GGACTGGGTGGATAAAAACAGATTTTGATCTTTGGGGAGGCATGTTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGGTGGATAAAAACAGATTTTGATCTTTGGGGAGGCATGTTCTTT  700

seq1  TGAGCGATAGAGTAAGACATCTGTTCCGACAATGCTTAAGTGAATGGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCGATAGAGTAAGACATCTGTTCCGACAATGCTTAAGTGAATGGCAC  750

seq1  GAAAGTTCTGGGCAGGAAGGTTGCAAGAAAATACTCTGAAGCTGCAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTCTGGGCAGGAAGGTTGCAAGAAAATACTCTGAAGCTGCAAGAA  800

seq1  GAATGGAAACAGAGAAATGGCCTAGACGGGGGTAATTGTGTCTTCTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAAACAGAGAAATGGCCTAGACGGGGGTAATTGTGTCTTCTTTCT  850

seq1  CCTCC-TTCCCA-TTTCACATCCGCTGGTAACTACCTAACCAGTGTTTG-  897
      ||||| |||||| |||||||||||||||||||||||||||||||||||| 
seq2  CCTCCTTTCCCATTTTCACATCCGCTGGTAACTACCTAACCAGTGTTTGC  900

seq1  CCTAATTATTAGAGGTA-TTGAATAATGTTAATAATTATATGAGTATTA-  945
      ||||||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  CCTAATTATTAGAGGTATTTGAATAATGTTAATAATTATATGAGTATTAT  950

seq1  TTAAAAATGTATTTAATGGTAGGACGCTAAATTATCATGGGGTGTGTCTC  995
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTAAAAATGTATTTAATGGTAGGACGCT-AATTATCATGGGGTGTGTCTC  999

seq1  CACTGTGACGGCAATTTGCTTTTTCTGGTTTC-TAAAATGATTGTTTT--  1042
      |||||||||||||||||||||||||||| ||| |||||||||||||||  
seq2  CACTGTGACGGCAATTTGCTTTTTCTGGGTTCTTAAAATGATTGTTTTTA  1049

seq1  AGGACGTGCTGAAAATTGCGTG-TTCTTTGTACAACTACAGGAGTGTTGG  1091
      ||||||||||||||| |||||| |||||||||||  ||||||| ||||||
seq2  AGGACGTGCTGAAAA-TGCGTGTTTCTTTGTACACTTACAGGA-TGTTGG  1097

seq1  GA--GACTACAAACGAA  1106
      ||   ||||||||||||
seq2  GAAGAACTACAAACGAA  1114

seq1: chr12_57697301_57698453
seq2: B6Ng01-246M17.g_70_1237 (reverse)

seq1  GTGGTAAAGGAA----TGGGA-CTAATAGCTGTA--TTTTAACTATTAGG  43
      ||||||||||||    || || ||||||||||||  ||| ||||| ||||
seq2  GTGGTAAAGGAAAATGTGAGACCTAATAGCTGTAATTTTGAACTA-TAGG  49

seq1  AAGTTGGGA--CTTGATTC--AACATGTTCTAAGTA-GCCACTTG--CTA  86
      |||| | ||  || |||||  | |||||||| |||| ||||||||   ||
seq2  AAGTGGAGAACCTAGATTCCAACCATGTTCT-AGTAGGCCACTTGACTTA  98

seq1  GGTTTT-CAGTGTGTAAAAAAAAAAGCAATATAATGTGGATCATG-TAAA  134
      |||||| ||||||||||||||||| |||||||||||||||||||| || |
seq2  GGTTTTCCAGTGTGTAAAAAAAAAGGCAATATAATGTGGATCATGTTATA  148

seq1  TAACACTGATGTCTATGTA-TGTGGAAAAGAAGAAAAATTCAAAGTAGAG  183
      ||||||||||||||||||| |||||  |||||| ||||||||||||||||
seq2  TAACACTGATGTCTATGTATTGTGG--AAGAAGGAAAATTCAAAGTAGAG  196

seq1  AGGAGGTAGTCACAACCCAGCTGAGAGGGAAAGGTGACCCATTCACTGCT  233
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTAGTCACAACCCAGCTGAGAGGGAAAGGTGACCCATTCACTGCT  246

seq1  GTTCTCTGAAGCTCAGCCTCTGGACTCACATCTGGACCAAATGCTCCAGA  283
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTGAAGCTCAGCCTCTGGACTCACATCTGGACCAAATGCTCCAGA  296

seq1  CT-CCATGTCTCATTCATCCCCCAGTGCTATTAAGCCTTTTTGAGACAGT  332
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATGTCTCATTCATCCCCCAGTGCTATTAAGCCTTTTTGAGACAGT  346

seq1  CAGGTTGCCATAGTTGTGCCTGTCTTACATACTTTGTTTTCTATGTTTTA  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGCCATAGTTGTGCCTGTCTTACATACTTTGTTTTCTATGTTTTA  396

seq1  TGAGGCTTCGAGGCCTGCCTTTTGCCAGTACCCAAGGACAGCAAACAACT  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTTCGAGGCCTGCCTTTTGCCAGTACCCAAGGACAGCAAACAACT  446

seq1  TACTTACCTCAAGAGGACGTC-TTATATGCAGGAGAAAAGGGTCCTCTAC  481
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TACTTACCTCAAGAGGACGTCTTTATATGCAGGAGAAAAGGGTCCTCTAC  496

seq1  AAGCCAGCTCCCTCTGACTTGCCTGGTATTCAAGCATCCAGGATCTTGTC  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGCTCCCTCTGACTTGCCTGGTATTCAAGCATCCAGGATCTTGTC  546

seq1  CTGTGCACTCCATCCCTTTCATGAAAGTCCAGTGTGGGTTCTTCCCATTC  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCACTCCATCCCTTTCATGAAAGTCCAGTGTGGGTTCTTCCCATTC  596

seq1  TCTTCTGATACAGTCTCTGTTTCTAGGAAGTCCCTGTGCTTCCCACAGGG  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGATACAGTCTCTGTTTCTAGGAAGTCCCTGTGCTTCCCACAGGG  646

seq1  TTCTCTGTCTTATTTTGAGTCTTCTTCTTCTTCTTGAAAACTGCAACAAG  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTCTTATTTTGAGTCTTCTTCTTCTTCTTGAAAACTGCAACAAG  696

seq1  CCATTTTTTTTTCTACATCAATGATCCCCTGGTTTGTTAGCTTTATCAGA  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTTTTTTCTACATCAATGATCCCCTGGTTTGTTAGCTTTATCAGA  746

seq1  TCTGAATTTAAACAACCACCACCAACCAAAAGGAAAAAGGACAAAAACAA  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATTTAAACAACCACCACCAACCAAAAGGAAAAAGGACAAAAACAA  796

seq1  ACAAATAAACAAATAGACTCCCACAAAAAACAAAAGTCAAAACAGAGCCA  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAAACAAATAGACTCCCACAAAAAACAAAAGTCAAAACAGAGCCA  846

seq1  AAATAAATGCCAAAAGAAACAAGAAGTCCACAAACAATCAAACAAACAGA  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATGCCAAAAGAAACAAGAAGTCCACAAACAATCAAACAAACAGA  896

seq1  CAAAAACATTGACTTCATTTTGTGTTGACCAACCACTCCTGGACATGGGA  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACATTGACTTCATTTTGTGTTGACCAACCACTCCTGGACATGGGA  946

seq1  CCCTTTGGCCAACAACACAATAAGGTATAACCTACTCCTGTTACTGGGAG  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGGCCAACAACACAATAAGGTATAACCTACTCCTGTTACTGGGAG  996

seq1  TTTTACTTATTAGCATAAGAGGTCTAGTTGAGGCATTGTCTTCCTATTAT  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTATTAGCATAAGAGGTCTAGTTGAGGCATTGTCTTCCTATTAT  1046

seq1  CTGCTAATTCTTTTCATATATGTATAAATTTTAAGAAAATATCATTCTTT  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAATTCTTTTCATATATGTATAAATTTTAAGAAAATATCATTCTTT  1096

seq1  ATGTTTATATCAACACAATGTGTCTCTAGTCCCTGGAAGATTTAAAGTTT  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATATCAACACAATGTGTCTCTAGTCCCTGGAAGATTTAAAGTTT  1146

seq1  TATTATATTGGCAGTGGAATTC  1153
      ||||||||||||||||||||||
seq2  TATTATATTGGCAGTGGAATTC  1168