BAC Information

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BAC

Clone NameB6Ng01-246O03
Chromosome12 (Build37)
Map Location 85,904,876 - 85,905,981
singlet/doubletsinglet
Overlap genenone
Upstream geneZfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52
Downstream geneChx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246O03.bB6Ng01-246O03.g
ACCGA055374GA055375
length1,2051,115
definitionB6Ng01-246O03.b B6Ng01-246O03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcggagaagcacctgaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacag
cagattctggcgtggatgtggagaaagaggaacactcctccatggttggt
gggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctc
agaaaattggacatagtactaccggaggatccagcaatacctctcctggg
catatatccagaagatgccccaactggtaagaaggacacatgctccacta
tgttcatagcagccttatttataatagccagaagctggaaagaacccaga
tgccccttgtattagtcagggttctctagagtcacagaacttacggatag
tctctagttagtaaaggaatatattgatgacttacagtcggcagcccaat
tcccaacaatggttcagtcgcagctgtgaatggaagtccaaggatctagc
agttactcagtctcacgcagcaagcaggcgaaggagcaagagcaagagca
agagctagactcccttcttccaatgtccttatattgtctccagcagaagg
tgtagcccagattaaaggtgcgttccaccacacctttaatcccagattaa
aggtgtgttccttaaactcggagattcaatcttctggaatccatagccac
tatggctcaagatctccaaaccaagatccagataaggatctccaagcctc
cagataagggtcactggtgagccttccaattctggattgtagttcattcc
aaatatagtcaagttgacaaccaggaatagccactacacccctcaacaga
ggaatggatacagaaaattgtggtacatctacacaatgggagtactactc
agctattaaaaagaatgaatttatgaaattcctaggcaaatggatggacc
tggagggcatcatcctgagtgagttacacattcacaaaggactcacacca
atatgtactcactgatagtgatatttagccccaaactaagatccagaatt
taagatacattgctaacacatgaaactcagaagaattgagactgaactgt
gaacctatggcttctcttagaatgggaaataaacagcctcatgtgaagcg
agtac
gaattctccctgcggccttattttgcagtcttttaatgctgagtgttcgg
taggcagatatttaatcataatgatgaccccgagggactggttttattat
catccccattttgtggctgaagagactaaaggcacagggagtctggatgg
ctttcccaatgttacttggcaaactctagagcagaggccaaaatgcatgc
aggcagcctaactctaacgcatgcccttgacctctgtgtggattcagggt
cagggaacgcatttagctctgggttgtctggttggttggcctgttttgtt
gttggattgttttattttgttgaggccgactcctgccctggccttgaact
tgtggcaatcctcttgcctcaacttctcaagcgctgagactaacagacct
gccgccatgcctagatataactctgatgtagttattttgcagtttaagtg
gctgaagttaaatgactggatccaagcagagccaagatttgaatccactg
tgatcagattgcgtgtctctgaaagggcacttcacttctctcaagatcta
gcccaagctttggggacaatctttctctctctgtcctcaatgaaggcttg
ttaggtgcaagggttgaaccagggtctcatgtggcacagtctggccgaaa
acttgctgtggagccaaaaatgaccttgaatgtgtaatcttcctacctct
gcctcctgaattctgggattctagacctgcaccaccacacccagtgccac
agatgttttgagtcagagtcttgcacaaaggctgacagttgtgggccagt
aacaattaaagtagaatgacctccccagccccgccccgttgtcagcctgc
accctgaaatcaaccagggtttccaggtctcaggtatctggctctttagc
taatgctgatccatctctccctctacctgtagcctctggcaaggggttgt
tttctcagacaatcagagcttacacctccttgttaccctccttgagagag
aaatggtccaatgtcacctcggacttgaaaactggccagctttggaatgg
gattggtcaagaagatttttcatctgcatcttctggcaagtgcacctttg
gtcactcgcctctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_85904876_85905981
seq2: B6Ng01-246O03.g_68_1182

seq1  GAATTCTCCCTGCGGCCTTATTTTGCAGTCTTTTAATGCTGAGTGTTCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTGCGGCCTTATTTTGCAGTCTTTTAATGCTGAGTGTTCGG  50

seq1  TAGGCAGATATTTAATCATAATGATGACCCCGAGGGACTGGTTTTATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAGATATTTAATCATAATGATGACCCCGAGGGACTGGTTTTATTAT  100

seq1  CATCCCCATTTTGTGGCTGAAGAGACTAAAGGCACAGGGAGTCTGGATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCATTTTGTGGCTGAAGAGACTAAAGGCACAGGGAGTCTGGATGG  150

seq1  CTTTCCCAATGTTACTTGGCAAACTCTAGAGCAGAGGCCAAAATGCATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCAATGTTACTTGGCAAACTCTAGAGCAGAGGCCAAAATGCATGC  200

seq1  AGGCAGCCTAACTCTAACGCATGCCCTTGACCTCTGTGTGGATTCAGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCCTAACTCTAACGCATGCCCTTGACCTCTGTGTGGATTCAGGGT  250

seq1  CAGGGAACGCATTTAGCTCTGGGTTGTCTGGTTGGTTGGCCTGTTTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAACGCATTTAGCTCTGGGTTGTCTGGTTGGTTGGCCTGTTTTGTT  300

seq1  GTTGGATTGTTTTATTTTGTTGAGGCCGACTCCTGCCCTGGCCTTGAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATTGTTTTATTTTGTTGAGGCCGACTCCTGCCCTGGCCTTGAACT  350

seq1  TGTGGCAATCCTCTTGCCTCAACTTCTCAAGCGCTGAGACTAACAGACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAATCCTCTTGCCTCAACTTCTCAAGCGCTGAGACTAACAGACCT  400

seq1  GCCGCCATGCCTAGATATAACTCTGATGTAGTTATTTTGCAGTTTAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCCATGCCTAGATATAACTCTGATGTAGTTATTTTGCAGTTTAAGTG  450

seq1  GCTGAAGTTAAATGACTGGATCCAAGCAGAGCCAAGATTTGAATCCACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGTTAAATGACTGGATCCAAGCAGAGCCAAGATTTGAATCCACTG  500

seq1  TGATCAGATTGCGTGTCTCTGAAAGGGCACTTCACTTCTCTCAAGATCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAGATTGCGTGTCTCTGAAAGGGCACTTCACTTCTCTCAAGATCTA  550

seq1  GCCCAAGCTTTGGGGACAATCTTTCTCTCTCTGTCCTCAATGAAGGCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGCTTTGGGGACAATCTTTCTCTCTCTGTCCTCAATGAAGGCTTG  600

seq1  TTAGGTGCAAGGGTTGAACCAGGGTCTCATGTGGCACAGTCTGGCCGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTGCAAGGGTTGAACCAGGGTCTCATGTGGCACAGTCTGGCCGAAA  650

seq1  ACTTGCTGTGGAGCCAAAAATGACCTTGAATGTGTAATCTTCCTACCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTGTGGAGCCAAAAATGACCTTGAATGTGTAATCTTCCTACCTCT  700

seq1  GCCTCCTGAATTCTGGGATTCTAGACCTGCACCACCACACCCAGTGCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTGAATTCTGGGATTCTAGACCTGCACCACCACACCCAGTGCCAC  750

seq1  AGATGTTTTGAGTCAGAGTCTTGCAC-AAGGCTGACAGTTGTGGGCCAGT  799
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGATGTTTTGAGTCAGAGTCTTGCACAAAGGCTGACAGTTGTGGGCCAGT  800

seq1  AACAATTAAAGTAGAATGACCTCCCCAGCCCCGCCCCGTTGTCAGCCTGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTAAAGTAGAATGACCTCCCCAGCCCCGCCCCGTTGTCAGCCTGC  850

seq1  ACCCTGAAATCAACCAGGGTTTCCAGGTCTCAAGGTATCTGGCTC-TTAG  898
      ||||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  ACCCTGAAATCAACCAGGGTTTCCAGGTCTC-AGGTATCTGGCTCTTTAG  899

seq1  CTAATGCTGATCCATCTCTCCCTCTACCTGTAGCCTCTGGCAAGGG--TG  946
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  CTAATGCTGATCCATCTCTCCCTCTACCTGTAGCCTCTGGCAAGGGGTTG  949

seq1  -TTTCTCAGACAATCAGAGGCTACACCTCCTTG-TAACCTCC-TGAGAGA  993
       ||||||||||||||||||  |||||||||||| || ||||| |||||||
seq2  TTTTCTCAGACAATCAGAGCTTACACCTCCTTGTTACCCTCCTTGAGAGA  999

seq1  G-AATGGT-CAATGTCACCTCGGGACTGAAAACTGG-CAGCTTTGGAAAT  1040
      | |||||| ||||||||||||||   |||||||||| |||||||||||  
seq2  GAAATGGTCCAATGTCACCTCGGACTTGAAAACTGGCCAGCTTTGGAA--  1047

seq1  GGGGATTGGTCAAG-AGATTTTTCATCTGCATCTTCTGGCAAGTGCCAAC  1089
       ||||||||||||| |||||||||||||||||||||||||||||| || |
seq2  TGGGATTGGTCAAGAAGATTTTTCATCTGCATCTTCTGGCAAGTG-CACC  1096

seq1  TTT-GTCACTCG-CTCTCA  1106
      ||| |||||||| ||||||
seq2  TTTGGTCACTCGCCTCTCA  1115