BAC Information

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BAC

Clone NameB6Ng01-247I03
Chromosome12 (Build37)
Map Location 106,104,169 - 106,263,813
singlet/doubletdoublet
Overlap gene4831426I19Rik
Upstream geneLOC667954, Serpina1c, Serpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc, Dicer1, Clmn
Downstream geneSnhg10, Glrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1, LOC100040310, 2810011L19Rik, LOC100040339, EG668081, D430019H16Rik, Bdkrb2, Bdkrb1, 2410024A21Rik, 4933433P14Rik, Ak7, Papola, Vrk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247I03.bB6Ng01-247I03.g
ACCGA055826GA055827
length922959
definitionB6Ng01-247I03.b B6Ng01-247I03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,104,169 - 106,105,092)(106,262,873 - 106,263,813)
sequence
gaattctggagcttatcttgtttggggctccacagggcctgtgtacttgc
agccaactcctttatcggttagccaacagaaaatctgggagtttgtctaa
agtgaggaatgacttaggggtacacaagtcccagtgtcttgctctctgtt
cagatcctacctacaagaaaaccaagtatgccattggtaggatgaatgcc
cagagggagaaagtgcgcagagctctctgagtatggagactcaccgaggc
ctgctgaccattgccatgtctgtggaaagcccagcaatgagcaagcaaag
atgaaggccacagacatgtctcctgggagaagcgggccctgggggggggg
ggggcaatgagaagacccttaagtcatttgtgtttaacccaataaccagc
tgagatgacaatcccagatcaaagtgatcttcagaaagggggacattgtc
agctgagggcaaggagccagggtggaggtaacatcagcaagggtcccata
aagcctgaccctgaatctgagactaaaggaagggagaggcccacctcccc
aaccccccagaatccaacccccaggaccaggcatccacccagcagagtag
atcatgatctcagtgcagatcatgggtgtctgaggctctcactagaccac
tctgtccctgcctggattcaaggttacgctatagagccaggtccagttaa
catgcatggtctcacctctcctccacaaggcatcccacttgaattcgatt
tctatctttgctggggttgaattcatttccttcacaagccaagtgctaag
aaagtctgcttcgttgtctcattgtgagatggccaaatgaagtacttgac
tcaaaacagtatgtggttgaaaatgatcatacatgacggtttgtctttga
tgcttattcttgggaatgactg
gaattctcttgaagaaattgtttcttgtggaaaaaaaaaaaaattaagag
tcttcatttcaagaggtgggagtggggggaggaagaactgagcattttag
tgagtctcctgtcttatcctgtaaggccagcagggggcactagcttgtca
tctacagaagctggagccctgctgataatgtagtctgggaatcggtaagt
ggcccagatttgtgctttcccctagtgccagaacctatcctatggagtag
ttaactcacgtgctttctattagagtcacaaaatggcatatataacgggg
tcattgggagacttaaaagttgacagatagtctgagatactaaaaggggt
acacgaggctcggttggtagaatgtttacttagcaagcaggaatttctga
attcagttcccaacactgcaggacatggggtgtgatggtgaatgcctgta
atcccagcactcaggcggtggaggcagaaagatgagaattcaaggtcatc
cttggttatatactgagttccagccagcctgaagtaggtgagacccctgc
catcctcacctccactcccctcaaccaaaacgaagcagaaaagaacattc
tggaagcattgggtataaacgaggaggatcctgggggtactggtctgcct
gggctgactagagacctgctttcaaaaaaaaaatatgaattgagcaaaac
acattttcaagaggatggatgctttggttcccctcacaatgccggaggaa
cagtttttgtagacagcccttcctgcagtccgtggtcagtaccttgggat
accggtcatcaggtgtgagggactgagtgctgcccgcatggagttctttt
tcctaactgaatcacagcaggtttgtttgagacaataagtagacgtgatg
gagacccactcatcttaagagatttagagatccactatctagtcctgagc
agtctcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_106104169_106105092
seq2: B6Ng01-247I03.b_48_967

seq1  GAATTCTGGAGCTTATCTTGTTTGGGGCTCCACAGGGCCTGTGTACTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAGCTTATCTTGTTTGGGGCTCCACAGGGCCTGTGTACTTGC  50

seq1  AGCCAACTCCTTTATCGGTTAGCCAACAGAAAATCTGGGAGTTTGTCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACTCCTTTATCGGTTAGCCAACAGAAAATCTGGGAGTTTGTCTAA  100

seq1  AGTGAGGAATGACTTAGGGGTACACAAGTCCCAGTGTCTTGCTCTCTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGAATGACTTAGGGGTACACAAGTCCCAGTGTCTTGCTCTCTGTT  150

seq1  CAGATCCTACCTACAAGAAAACCAAGTATGCCATTGGTAGGATGAATGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCTACCTACAAGAAAACCAAGTATGCCATTGGTAGGATGAATGCC  200

seq1  CAGAGGGAGAAAGTGCGCAGAGCTCTCTGAGTATGGAGACTCACCGAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGAGAAAGTGCGCAGAGCTCTCTGAGTATGGAGACTCACCGAGGC  250

seq1  CTGCTGACCATTGCCATGTCTGTGGAAAGCCCAGCAATGAGCAAGCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGACCATTGCCATGTCTGTGGAAAGCCCAGCAATGAGCAAGCAAAG  300

seq1  ATGAAGGCCACAGACATGTCTCCTGGGAGAAGCGGGCCCTGGGGGGGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGCCACAGACATGTCTCCTGGGAGAAGCGGGCCCTGGGGGGGGGG  350

seq1  GGGGCAATGAGAAGACCCTTAAGTCATTTGTGTTTAACCCAATAACCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAATGAGAAGACCCTTAAGTCATTTGTGTTTAACCCAATAACCAGC  400

seq1  TGAGATGACAATCCCAGATCAAAGTGATCTTCAGAAAGGGGGACATTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGACAATCCCAGATCAAAGTGATCTTCAGAAAGGGGGACATTGTC  450

seq1  AGCTGAGGGCAAGGAGCCAGGGTGGAGGTAACATCAGCAAGGGTCCCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGGGCAAGGAGCCAGGGTGGAGGTAACATCAGCAAGGGTCCCATA  500

seq1  AAGCCTGACCCTGAAGCTGAGACTAAAGGAAGGGAGAGGCCCACCTCCCC  550
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAGCCTGACCCTGAATCTGAGACTAAAGGAAGGGAGAGGCCCACCTCCCC  550

seq1  AACCCCCCAGAATCCAACCCCCAGGACCAGGCATCCACCCAGCAGAGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCCCAGAATCCAACCCCCAGGACCAGGCATCCACCCAGCAGAGTAG  600

seq1  ATCATGATCTCAGTGCAGATCATGGGTGTCTGAGGCTCTCACTAGACCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGATCTCAGTGCAGATCATGGGTGTCTGAGGCTCTCACTAGACCAC  650

seq1  TCTGTCCCTGCCTGGATTCAAGGTTACGCTATAGAGCCAGGTCCAGTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCCTGCCTGGATTCAAGGTTACGCTATAGAGCCAGGTCCAGTTAA  700

seq1  CATGCATGGTCTCACCTCTCCTCCACAAGGCATCCCACTTGAATTCGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATGGTCTCACCTCTCCTCCACAAGGCATCCCACTTGAATTCGATT  750

seq1  TCTATCTTTGCTGTGGGTTGAAAATCATTTCCTTCACAAAGCCAAGTGCT  800
      ||||||||||||| |||||| || ||||||||||||| ||||||||||||
seq2  TCTATCTTTGCTG-GGGTTG-AATTCATTTCCTTCAC-AAGCCAAGTGCT  797

seq1  AAGAAAGTCAGCTTCGTTGTCTCCATTGTGAGATGGCC-AATAGAGAACT  849
      ||||||||| |||||||||||| ||||||||||||||| |||  || |||
seq2  AAGAAAGTCTGCTTCGTTGTCT-CATTGTGAGATGGCCAAATGAAGTACT  846

seq1  TGACTCAAAACAGTATGTGGTTGAAAAATGATCAGAAAGGACGGGCTATC  899
      ||||||||||||||||||||||| |||||||||| | | |||||  | ||
seq2  TGACTCAAAACAGTATGTGGTTG-AAAATGATCATACATGACGGTTTGTC  895

seq1  TGTGATGCCTATTCTTGGGAATGAC  924
      | |||||| ||||||||||||||||
seq2  TTTGATGCTTATTCTTGGGAATGAC  920

seq1: chr12_106262873_106263813
seq2: B6Ng01-247I03.g_67_1025 (reverse)

seq1  GCTG-GACTGCTCAGG-CT-GATGGTGG-TCTCTATATCTCTTA--GTGG  44
      |||| ||||||||||| || ||| |||| |||||| ||||||||   || 
seq2  GCTGAGACTGCTCAGGACTAGATAGTGGATCTCTAAATCTCTTAAGATGA  50

seq1  GTGGGTCTCCATCACGTCTAC-TATTGTCTC-AACAAACCTGCTGTGGTT  92
      ||||||||||||||||||||| ||||||||| ||||||||||||||| ||
seq2  GTGGGTCTCCATCACGTCTACTTATTGTCTCAAACAAACCTGCTGTGATT  100

seq1  CAGTTAGG-AAAAGGACTCCATGCGGGCAGCACTCAGTCCCTCACACCTG  141
      |||||||| ||||| |||||||||||||||||||||||||||||||||||
seq2  CAGTTAGGAAAAAGAACTCCATGCGGGCAGCACTCAGTCCCTCACACCTG  150

seq1  ATGACCGGTATCCCAAGGTACTGACCACGGACTGCAGG-AGGGCTGTCTA  190
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATGACCGGTATCCCAAGGTACTGACCACGGACTGCAGGAAGGGCTGTCTA  200

seq1  C-AAAACTGTTCCTCCGGCATTGTGA-GGGAACC-AAGCATCCATCCTCT  237
      | |||||||||||||||||||||||| ||||||| |||||||||||||||
seq2  CAAAAACTGTTCCTCCGGCATTGTGAGGGGAACCAAAGCATCCATCCTCT  250

seq1  TG-AAATGTG-TTTGCTC-ATTCATATTTTTTTTTTG-AAGCAGGTCTCT  283
      || ||||||| ||||||| |||||||||||||||||| ||||||||||||
seq2  TGAAAATGTGTTTTGCTCAATTCATATTTTTTTTTTGAAAGCAGGTCTCT  300

seq1  AGTCAGCCCAGGCAGACCAGTA-CCCCAGGATCCTCCTCGTTTATACCCA  332
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGTCAGCCCAGGCAGACCAGTACCCCCAGGATCCTCCTCGTTTATACCCA  350

seq1  ATGCTTCCAGAATGTTCTTTTCTGCTTCGTTTTGGTTGAGGGGAGTGGAG  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCCAGAATGTTCTTTTCTGCTTCGTTTTGGTTGAGGGGAGTGGAG  400

seq1  GTGAGGATGGCAGGGGTCTCACCTACTTCAGGCTGGCTGGAACTCAGTAT  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGATGGCAGGGGTCTCACCTACTTCAGGCTGGCTGGAACTCAGTAT  450

seq1  ATAACCAAGGATGACCTTGAATTCTCATCTTTCTGCCTCCACCGCCTGAG  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCAAGGATGACCTTGAATTCTCATCTTTCTGCCTCCACCGCCTGAG  500

seq1  TGCTGGGATTACAGGCATTCACCATCACACCCCATGTCCTGCAGTGTTGG  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGATTACAGGCATTCACCATCACACCCCATGTCCTGCAGTGTTGG  550

seq1  GAACTGAATTCAGAAATTCCTGCTTGCTAAGTAAACATTCTACCAACCGA  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAATTCAGAAATTCCTGCTTGCTAAGTAAACATTCTACCAACCGA  600

seq1  GCCTCGTGTACCCCTTTTAGTATCTCAGACTATCTGTCAACTTTTAAGTC  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGTGTACCCCTTTTAGTATCTCAGACTATCTGTCAACTTTTAAGTC  650

seq1  TCCCAATGACCCCGTTATATATGCCATTTTGTGACTCTAATAGAAAGCAC  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATGACCCCGTTATATATGCCATTTTGTGACTCTAATAGAAAGCAC  700

seq1  GTGAGTTAACTACTCCATAGGATAGGTTCTGGCACTAGGGGAAAGCACAA  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTAACTACTCCATAGGATAGGTTCTGGCACTAGGGGAAAGCACAA  750

seq1  ATCTGGGCCACTTACCGATTCCCAGACTACATTATCAGCAGGGCTCCAGC  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGCCACTTACCGATTCCCAGACTACATTATCAGCAGGGCTCCAGC  800

seq1  TTCTGTAGATGACAAGCTAGTGCCCCCTGCTGGCCTTACAGGATAAGACA  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAGATGACAAGCTAGTGCCCCCTGCTGGCCTTACAGGATAAGACA  850

seq1  GGAGACTCACTAAAATGCTCAGTTCTTCCTCCCCCCACTCCCACCTCTTG  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTCACTAAAATGCTCAGTTCTTCCTCCCCCCACTCCCACCTCTTG  900

seq1  AAATGAAGACTCTTAATTTTTTTTTTTTTCCACAAGAAACAATTTCTTCA  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGACTCTTAATTTTTTTTTTTTTCCACAAGAAACAATTTCTTCA  950

seq1  AGAGAATTC  941
      |||||||||
seq2  AGAGAATTC  959