BAC Information

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BAC

Clone NameB6Ng01-247I21
Chromosome12 (Build37)
Map Location 22,685,895 - 22,823,613
singlet/doubletdoublet
Overlap geneEG629133, EG668660, EG668662
Upstream gene6030426L16Rik, LOC434693, EG668645, EG668646, LOC100043416, LOC668650, EG668496, LOC668653, EG432637, LOC668656
Downstream geneLOC668664, 2410018L13Rik, LOC77114, EG668669, EG668670, LOC668680, LOC100042895, LOC100043435
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247I21.bB6Ng01-247I21.g
ACCGA055859GA055860
length6271,139
definitionB6Ng01-247I21.b B6Ng01-247I21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,822,989 - 22,823,613)(22,685,895 - 22,687,024)
sequence
gggaattcattcccacagtccaaaactcagcttgcaagctttaaaattca
agagcacaccttcccttcttcccatgcctagttgagcatatcttcaacac
ttcccaaggcaccttgttctgttatagcatgcggtagtttagatgtgaaa
tgtctgccaaagacccaagttttgaagaatttttcctctaggtgtggcct
gaggaagaaagttagaccattgggagcatgcctttgaggcactgttggga
ccttgctccccttcccctccctgcttctctgctatggtaaacctgctaca
tgctgctaccatgatgcactaagttgctagatgcccaaatctactggtgc
tgggccaaacaaccatcgactgaaaccatgagccaaaaactaactctttc
ctcctaaattgattctttcatttcgtcacagtgatgtaaaagtaagtgac
acacaacactttccactcacaggtctgtctttgtcactagatgagtttgc
agcagatcaggtatataatcctttcagctttatgtccctaaaacccagca
cttgatttaattgtatcctttgaatggatacatttatactggtgtgtgtg
tgtatttgtgtgtgtgtgtgtgtgtgt
gaattcatagccgagacccttgaggactacaaggcgcccacggcctatag
cttcaccacgcgcacggcccagtgccgggacaccatgtcggccatcgagg
aggtgagcggtagagtagcccgcgccgggcgggaggctagggtcgcgggg
atcgcgctgcgccctgggcacccggtacacttccgcgcctggtgccggat
acccagtgccctccgcctgcgcccacacccgggaaaagtttctggtaccc
caaagccggacgcagccggaccagcagtgcccgacacagaagccctttgt
tccctgctctagggagaggctgcttggccaccttgggcattttttgggaa
cgctcctgactgtttccatttccctcgcagggtttcaggttctttgctcc
catcctcggagaggtcaacttaggccgcagagtctgtggcggcttggagc
cggggacccctgcgagctctgcggccctggagtgatggctctccctgcgt
ggacctctccaacttgttccggaagaatccccgcaggggcagctgtggct
tctgagccaacatgtagagcagagccagggaccctaagctgcttaggcac
gggtgcccatcccatcttgggaggcctggcagttcccactacttgccaca
gagcagcgctgtagagggatgtggagaatggtctctttgaggtccaaaag
gtctttggtggccgcttctgggctacctgtgtggtgcctgttgacagtat
gatcagctcctgtgcccttaacctggaacaggcctgcatagtcattgtat
tgagtggctaagcagcgagttctccagatcctggggaagagggacatcga
gaaggaagcaatttgggttgaaaattgaagcagcttggaagaggctgagt
gagtccagagaccacggctgtccacagcttgggaaagcctcacttacatc
atttttctttacctccccacagaatttagagtttcgtgttttcagctctg
tagctttgtgcgttccagcagacttcacaaaagttagctggagaacgaag
aaccacacattgtgtagcagtagttgaacccgatgaactacctttccctt
tgttcaggatttaacaatccaaggtacataattttaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_22822989_22823613
seq2: B6Ng01-247I21.b_47_671 (reverse)

seq1  ACACACACACACACACACACAAATACACACACACACCAGTATAAATGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACAAATACACACACACACCAGTATAAATGTAT  50

seq1  CCATTCAAAGGATACAATTAAATCAAGTGCTGGGTTTTAGGGACATAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCAAAGGATACAATTAAATCAAGTGCTGGGTTTTAGGGACATAAAG  100

seq1  CTGAAAGGATTATATACCTGATCTGCTGCAAACTCATCTAGTGACAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGGATTATATACCTGATCTGCTGCAAACTCATCTAGTGACAAAGA  150

seq1  CAGACCTGTGAGTGGAAAGTGTTGTGTGTCACTTACTTTTACATCACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTGTGAGTGGAAAGTGTTGTGTGTCACTTACTTTTACATCACTGT  200

seq1  GACGAAATGAAAGAATCAATTTAGGAGGAAAGAGTTAGTTTTTGGCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAAATGAAAGAATCAATTTAGGAGGAAAGAGTTAGTTTTTGGCTCAT  250

seq1  GGTTTCAGTCGATGGTTGTTTGGCCCAGCACCAGTAGATTTGGGCATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCAGTCGATGGTTGTTTGGCCCAGCACCAGTAGATTTGGGCATCTA  300

seq1  GCAACTTAGTGCATCATGGTAGCAGCATGTAGCAGGTTTACCATAGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTAGTGCATCATGGTAGCAGCATGTAGCAGGTTTACCATAGCAGA  350

seq1  GAAGCAGGGAGGGGAAGGGGAGCAAGGTCCCAACAGTGCCTCAAAGGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGGGAGGGGAAGGGGAGCAAGGTCCCAACAGTGCCTCAAAGGCAT  400

seq1  GCTCCCAATGGTCTAACTTTCTTCCTCAGGCCACACCTAGAGGAAAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCAATGGTCTAACTTTCTTCCTCAGGCCACACCTAGAGGAAAAATT  450

seq1  CTTCAAAACTTGGGTCTTTGGCAGACATTTCACATCTAAACTACCGCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAACTTGGGTCTTTGGCAGACATTTCACATCTAAACTACCGCATG  500

seq1  CTATAACAGAACAAGGTGCCTTGGGAAGTGTTGAAGATATGCTCAACTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACAGAACAAGGTGCCTTGGGAAGTGTTGAAGATATGCTCAACTAG  550

seq1  GCATGGGAAGAAGGGAAGGTGTGCTCTTGAATTTTAAAGCTTGCAAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGAAGAAGGGAAGGTGTGCTCTTGAATTTTAAAGCTTGCAAGCTG  600

seq1  AGTTTTGGACTGTGGGAATGAATTC  625
      |||||||||||||||||||||||||
seq2  AGTTTTGGACTGTGGGAATGAATTC  625

seq1: chr12_22685895_22687024
seq2: B6Ng01-247I21.g_71_1209

seq1  GAATTCATAGCCGAGACCCTTGAGGACTACAAGGCGCCCACGGCCTATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGCCGAGACCCTTGAGGACTACAAGGCGCCCACGGCCTATAG  50

seq1  CTTCACCACGCGCACGGCCCAGTGCCGGGACACCATGTCGGCCATCGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCACGCGCACGGCCCAGTGCCGGGACACCATGTCGGCCATCGAGG  100

seq1  AGGTGAGCGGTAGAGTAGCCCGCGCCGGGCGGGAGGCTAGGGTCGCGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGCGGTAGAGTAGCCCGCGCCGGGCGGGAGGCTAGGGTCGCGGGG  150

seq1  ATCGCGCTGCGCCCTGGGCACCCGGTACACTTCCGCGCCTGGTGCCGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCGCTGCGCCCTGGGCACCCGGTACACTTCCGCGCCTGGTGCCGGAT  200

seq1  ACCCAGTGCCCTCCGCCTGCGCCCACACCCGGGAAAAGTTTCTGGTACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTGCCCTCCGCCTGCGCCCACACCCGGGAAAAGTTTCTGGTACCC  250

seq1  CAAAGCCGGACGCAGCCGGACCAGCAGTGCCCGACACAGAAGCCCTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCGGACGCAGCCGGACCAGCAGTGCCCGACACAGAAGCCCTTTGT  300

seq1  TCCCTGCTCTAGGGAGAGGCTGCTTGGCCACCTTGGGCATTTTTTGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCTCTAGGGAGAGGCTGCTTGGCCACCTTGGGCATTTTTTGGGAA  350

seq1  CGCTCCTGACTGTTTCCATTTCCCTCGCAGGGTTTCAGGTTCTTTGCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCCTGACTGTTTCCATTTCCCTCGCAGGGTTTCAGGTTCTTTGCTCC  400

seq1  CATCCTCGGAGAGGTCAACTTAGGCCGCAGAGTCTGTGGCGGCTTGGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCGGAGAGGTCAACTTAGGCCGCAGAGTCTGTGGCGGCTTGGAGC  450

seq1  CGGGGACCCCTGCGAGCTCTGCGGCCCTGGAGTGATGGCTCTCCCTGCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGACCCCTGCGAGCTCTGCGGCCCTGGAGTGATGGCTCTCCCTGCGT  500

seq1  GGACCTCTCCAACTTGTTCCGGAAGAATCCCCGCAGGGGCAGCTGTGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTCTCCAACTTGTTCCGGAAGAATCCCCGCAGGGGCAGCTGTGGCT  550

seq1  TCTGAGCCAACATGTAGAGCAGAGCCAGGGACCCTAAGCTGCTTAGGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCCAACATGTAGAGCAGAGCCAGGGACCCTAAGCTGCTTAGGCAC  600

seq1  GGGTGCCCATCCCATCTTGGGAGGCCTGGCAGTTCCCACTACTTGCCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCCCATCCCATCTTGGGAGGCCTGGCAGTTCCCACTACTTGCCACA  650

seq1  GAGCAGCGCTGTAGAGGGATGTGGAGAATGGTCTCTTTGAGGTCCAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCGCTGTAGAGGGATGTGGAGAATGGTCTCTTTGAGGTCCAAAAG  700

seq1  GTCTTTGGTGGCCGCTTCTGGGCTACCTGTGTGGTGCCTGTTGACAGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGGTGGCCGCTTCTGGGCTACCTGTGTGGTGCCTGTTGACAGTAT  750

seq1  GATCAGCTCCTGTGCCCTTAACCTGGAACAGGCCTGCATAGTCATTGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGCTCCTGTGCCCTTAACCTGGAACAGGCCTGCATAGTCATTGTAT  800

seq1  TGAGTGGCTAAGCAGCGAGTTCTCCAGATCCTGGGGAAGAGGGACATCGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGCTAAGCAGCGAGTTCTCCAGATCCTGGGGAAGAGGGACATCGA  850

seq1  GAAGGAAGCAATTTGGGTTGAAAATTGAAGCAGGCTTGGAAGAGGCTGAG  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAAGGAAGCAATTTGGGTTGAAAATTGAAGCA-GCTTGGAAGAGGCTGAG  899

seq1  TGAGTCCAGAGACCACGGCTGTCCACAGCTTGGGAAAGCCTCACTTACAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCAGAGACCACGGCTGTCCACAGCTTGGGAAAGCCTCACTTACAT  949

seq1  CA-TTTTCTTTACCTCCCCAACAGAATTTAGAGTTTCGTGTTTTCAGCTC  999
      || |||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CATTTTTCTTTACCTCCCC-ACAGAATTTAGAGTTTCGTGTTTTCAGCTC  998

seq1  TGTAGGCTTTGTGCG-TCCAGCAGGACTCACAAAAGGTAGCTGGAGAACG  1048
      |||| |||||||||| ||||||||   ||||||||| |||||||||||||
seq2  TGTA-GCTTTGTGCGTTCCAGCAGACTTCACAAAAGTTAGCTGGAGAACG  1047

seq1  -AGA--CACACA-TGTGTAGCAGTAG-TGAA-CCGATG-ACTACATTT-C  1090
       |||  |||||| ||||||||||||| |||| |||||| ||||| ||| |
seq2  AAGAACCACACATTGTGTAGCAGTAGTTGAACCCGATGAACTACCTTTCC  1097

seq1  CTTTGTTCAGAATTTTAACAT-CAAGGTACAT-ATTTTAAAA  1130
      |||||||||| |||| |  || |||||||||| |||||||||
seq2  CTTTGTTCAGGATTTAACAATCCAAGGTACATAATTTTAAAA  1139