BAC Information

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BAC

Clone NameB6Ng01-247K24
Chromosome12 (Build37)15 (Build37)
Map Location 85,353,509 - 85,354,14679,613,679 - 79,613,781
singlet/doubletsingletsinglet
Overlap geneAcot1
Upstream geneDpf3, Wdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2
Downstream geneAcot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247K24.bB6Ng01-247K24.g
ACCGA055957GA055958
length639100
definitionB6Ng01-247K24.b B6Ng01-247K24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(85,353,509 - 85,354,146)(79,613,679 - 79,613,781)
sequence
gaattctacaggcctccacggtcacactgggatggcggaggcatgcagtg
gctgtggggagcaataactatgttctcagcctctcaagtgcaaatggccg
ttatcagagtgcatagcccatggcgaatctaataaacccctttgcacaat
agaacttctgtcgattctaatcctctagagagccctgacgtaggctctca
gcagacacttcatgggcaccagaaagccccactgtggccagtcccttttt
ctacaccactgtgggttttatgtgctgatgtccctttgtgtcatcgcctc
ttaagtgtgtgccttacattgtttgtgtttagctaacaaggcacttgctg
tcaaacccgatgtcctgagttcaatccccaggacccacatggtggaagat
gagaactcatttgaactgtactctgacatccacacatgtaccccacatat
acacacactaaataagtattttagcctgcctacttcatgaattctatctt
agtgactagagacagatggggggggggggcggtgtccacctgtgttgtgg
gcatgggcacgtgataagcactgttttagtctgttaaaactgatctttct
attaaaaagttcctcaacttttattttgaggaatgttaa
cagaacagccaggactatacagagaaacccggtctcggaaaaaagaaaga
agaagaagaagaagaggaggaggaggaggaggaggaggaggaggaggagg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_85353509_85354146
seq2: B6Ng01-247K24.b_49_687 (reverse)

seq1  TTTACATTCCTCAATAT-AAACTTGAGGAACTTCTTAATAGTAAGATCAG  49
      || ||||||||||| || ||| ||||||||||| ||||||| ||||||||
seq2  TTAACATTCCTCAAAATAAAAGTTGAGGAACTTTTTAATAGAAAGATCAG  50

seq1  TTTTAACAGACTTAAACAGTGCTTATCACGTGCCCATGCCCACAACACAG  99
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTTAACAGACTAAAACAGTGCTTATCACGTGCCCATGCCCACAACACAG  100

seq1  GTGGACACCGCCCCCCCCCCCCATCTGTCTCTAGTCACTAAGATAGAATT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACACCGCCCCCCCCCCCCATCTGTCTCTAGTCACTAAGATAGAATT  150

seq1  CATGAAGTAGGCAGGCTAAAATACTTATTTAGTGTGTGTATATGTGGGGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGTAGGCAGGCTAAAATACTTATTTAGTGTGTGTATATGTGGGGT  200

seq1  ACATGTGTGGATGTCAGAGTACAGTTCAAATGAGTTCTCATCTTCCACCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGTGGATGTCAGAGTACAGTTCAAATGAGTTCTCATCTTCCACCA  250

seq1  TGTGGGTCCTGGGGATTGAACTCAGGACATCGGGTTTGACAGCAAGTGCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTCCTGGGGATTGAACTCAGGACATCGGGTTTGACAGCAAGTGCC  300

seq1  TTGTTAGCTAAACACAAACAATGTAAGGCACACACTTAAGAGGCGATGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGCTAAACACAAACAATGTAAGGCACACACTTAAGAGGCGATGAC  350

seq1  ACAAAGGGACATCAGCACATAAAACCCACAGTGGTGTAGAAAAAGGGACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGGACATCAGCACATAAAACCCACAGTGGTGTAGAAAAAGGGACT  400

seq1  GGCCACAGTGGGGCTTTCTGGTGCCCATGAAGTGTCTGCTGAGAGCCTAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAGTGGGGCTTTCTGGTGCCCATGAAGTGTCTGCTGAGAGCCTAC  450

seq1  GTCAGGGCTCTCTAGAGGATTAGAATCGACAGAAGTTCTATTGTGCAAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGCTCTCTAGAGGATTAGAATCGACAGAAGTTCTATTGTGCAAAG  500

seq1  GGGTTTATTAGATTCGCCATGGGCTATGCACTCTGATAACGGCCATTTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTATTAGATTCGCCATGGGCTATGCACTCTGATAACGGCCATTTGC  550

seq1  ACTTGAGAGGCTGAGAACATAGTTATTGCTCCCCACAGCCACTGCATGCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGAGGCTGAGAACATAGTTATTGCTCCCCACAGCCACTGCATGCC  600

seq1  TCCGCCATCCCAGTGTGACCGTGGAGGCCTGTAGAATTC  638
      |||||||||||||||||||||||||||||||||||||||
seq2  TCCGCCATCCCAGTGTGACCGTGGAGGCCTGTAGAATTC  639

seq1: chr15_79613679_79613781
seq2: B6Ng01-247K24.g_80_175 (reverse)

seq1  CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTTCTTCTTC  50
      |||||||||||||||||||||||||||||||||||    |||||||||||
seq2  CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC----TCTTCTTCTTC  46

seq1  TTCTTCTTTTTTGGTTTTCGAGAGACAGGGTTTCTCTGTATAGTCCTGGC  100
      ||||||||| ||  |||||  ||||| |||||||||||||||||||||||
seq2  TTCTTCTTTCTT--TTTTC-CGAGACCGGGTTTCTCTGTATAGTCCTGGC  93

seq1  TGT  103
      |||
seq2  TGT  96