BAC Information

Click to search

BAC

Clone NameB6Ng01-247N01
Chromosome12 (Build37)
Map Location 35,794,131 - 35,942,862
singlet/doubletdoublet
Overlap geneSnx13
Upstream geneHdac9, 4921508M14Rik, Prps1l1
Downstream geneAhr, LOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247N01.bB6Ng01-247N01.g
ACCGA056053GA056054
length7131,131
definitionB6Ng01-247N01.b B6Ng01-247N01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,942,151 - 35,942,862)(35,794,131 - 35,795,277)
sequence
gaattctctgcgatggccctttcagtcattgtacaatatcaggataaaga
gcatacctatgctattttacagtgaactcggcctgttttctacactatct
caaggaccaaagtaagtcaaggggggtggcatgtagtcaacaacccttag
tgacacatttgattcaagaccagcatggactccacccccacccaatatac
aaatgaaaataaaaataagtaaatgcaatacaaaagtcaagaaaaaaata
ctacagcctgcatcactcaaaaatgcaaacacctgttctccaaccaacac
tttttaagaccaaggctgggcccagaaatatgcattaaatgttcatttag
taaacacctaaataatctacctaaacataaaaatgccagtatttttacat
agttttgtatagaaattggaagacatagtgaacagcactgtagaacatac
tagtgatttagaaggattgggggttctcctgtagcttgggctagcctcaa
accatccttgtaaatgagagacacctttgaactactgatcctcttctcta
agctcccagtgttggggttaacagcatatacataatgctttggggtttgg
gggggggtattttctttatttacatttcagatgctagcccctttcctggt
ttccctctccaaaaaatcctatctcatcctccctgcttctattagggtgc
tcctccacccatc
gaattctctgtttataaaccaaagatgaaatacctagatgaaattttctg
tacgtttttttgtggtcagaggcttggggagctaagcagtgttccttgtt
atttagaataacatgttctctagaacagaaggctgtaacagctactcttt
cagaattgtaagtgattcagtctttttgaagattcatttaagaatgataa
atttataaatgcgttaagatctggaaaaggtacattaactttaaactata
tatgaatagtgttttagcatagctttttcttgtgtttttaaactaaattg
aaagtttaatttgcttatatatatataataaagcaagggggaaagaagag
cagattactgcatgttaataatctttctttgattgctttgctaatgttta
tttttattctaacagttaaattctcttccaaggcttaaaatagtttgttt
gtttgtttgttttgtttttgtttttaaagtcaccttacaaagcagtgagt
ctcgtggcaccttgtacttgttttcctccccttctatcactgactctgtc
tctgtctctttgcaaacacccatcttcaggtccagcttctttcctaacat
tcattaaaccaaaccaaacaaaacaaaacttttctcatcattattgctta
attaaatgacatttcatacaaataattttagcatctagacttcagtgttt
ttatgtcaaatccctgaggaaacaatggactattaaatactttaaaaacc
agtgtatttgtatctcacgttgaagactgatactatttatatcatttctt
agtctctgcagtacctaatgggcttcacctctgagttcttgccatgtgtt
tgcattgcattaaacaatatcatgtggtacaggagaagaagtgtaaaaat
gattactaattgttacctagtacgtgaatgtgactttgttgtttgcacat
gtcagtgcatgcatgtttttattcatatgcctaattggcttggagattag
agttagatacttataagttgaaaagagtttttcttttgtgctctgttgta
tatgaacagtgtactgacgttaactttacataaccaaaagccttatacat
attgtgaagattgttgcttcttataataagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_35942151_35942862
seq2: B6Ng01-247N01.b_46_758 (reverse)

seq1  GATGGGTGGAGGAGCACCCTAATAGAAGCAGGGAGGATGAGATAGGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGTGGAGGAGCACCCTAATAGAAGCAGGGAGGATGAGATAGGATTT  50

seq1  TTTGGAG-GGGAAACCAGGAAAGGGGCTAGCATCTGAAATGTAAATAAAG  99
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGAGGGAAACCAGGAAAGGGGCTAGCATCTGAAATGTAAATAAAG  100

seq1  AAAATACCCCCCCCCAAACCCCAAAGCATTATGTATATGCTGTTAACCCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACCCCCCCCCAAACCCCAAAGCATTATGTATATGCTGTTAACCCC  150

seq1  AACACTGGGAGCTTAGAGAAGAGGATCAGTAGTTCAAAGGTGTCTCTCAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGGGAGCTTAGAGAAGAGGATCAGTAGTTCAAAGGTGTCTCTCAT  200

seq1  TTACAAGGATGGTTTGAGGCTAGCCCAAGCTACAGGAGAACCCCCAATCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGGATGGTTTGAGGCTAGCCCAAGCTACAGGAGAACCCCCAATCC  250

seq1  TTCTAAATCACTAGTATGTTCTACAGTGCTGTTCACTATGTCTTCCAATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAATCACTAGTATGTTCTACAGTGCTGTTCACTATGTCTTCCAATT  300

seq1  TCTATACAAAACTATGTAAAAATACTGGCATTTTTATGTTTAGGTAGATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACAAAACTATGTAAAAATACTGGCATTTTTATGTTTAGGTAGATT  350

seq1  ATTTAGGTGTTTACTAAATGAACATTTAATGCATATTTCTGGGCCCAGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGTGTTTACTAAATGAACATTTAATGCATATTTCTGGGCCCAGCC  400

seq1  TTGGTCTTAAAAAGTGTTGGTTGGAGAACAGGTGTTTGCATTTTTGAGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTTAAAAAGTGTTGGTTGGAGAACAGGTGTTTGCATTTTTGAGTG  450

seq1  ATGCAGGCTGTAGTATTTTTTTCTTGACTTTTGTATTGCATTTACTTATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGCTGTAGTATTTTTTTCTTGACTTTTGTATTGCATTTACTTATT  500

seq1  TTTATTTTCATTTGTATATTGGGTGGGGGTGGAGTCCATGCTGGTCTTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTCATTTGTATATTGGGTGGGGGTGGAGTCCATGCTGGTCTTGA  550

seq1  ATCAAATGTGTCACTAAGGGTTGTTGACTACATGCCACCCCCCTTGACTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATGTGTCACTAAGGGTTGTTGACTACATGCCACCCCCCTTGACTT  600

seq1  ACTTTGGTCCTTGAGATAGTGTAGAAAACAGGCCGAGTTCACTGTAAAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGTCCTTGAGATAGTGTAGAAAACAGGCCGAGTTCACTGTAAAAT  650

seq1  AGCATAGGTATGCTCTTTATCCTGATATTGTACAATGACTGAAAGGGCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGGTATGCTCTTTATCCTGATATTGTACAATGACTGAAAGGGCCA  700

seq1  TCGCAGAGAATTC  712
      |||||||||||||
seq2  TCGCAGAGAATTC  713

seq1: chr12_35794131_35795277
seq2: B6Ng01-247N01.g_66_1196

seq1  GAATTCTCTGTTTATAAACCAAAGATGAAATACCTAGATGAAATTTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTTATAAACCAAAGATGAAATACCTAGATGAAATTTTCTG  50

seq1  TACGTTTTTTTGTGGTCAGAGGCTTGGGGAGCTAAGCAGTGTTCCTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTTTTTTTGTGGTCAGAGGCTTGGGGAGCTAAGCAGTGTTCCTTGTT  100

seq1  ATTTAGAATAACATGTTCTCTAGAACAGAAGGCTGTAACAGCTACTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAATAACATGTTCTCTAGAACAGAAGGCTGTAACAGCTACTCTTT  150

seq1  CAGAATTGTAAGTGATTCAGTCTTTTTGAAGATTCATTTAAGAATGATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTGTAAGTGATTCAGTCTTTTTGAAGATTCATTTAAGAATGATAA  200

seq1  ATTTATAAATGCGTTAAGATCTGGAAAAGGTACATTAACTTTAAACTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAAATGCGTTAAGATCTGGAAAAGGTACATTAACTTTAAACTATA  250

seq1  TATGAATAGTGTTTTAGCATAGCTTTTTCTTGTGTTTTTAAACTAAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATAGTGTTTTAGCATAGCTTTTTCTTGTGTTTTTAAACTAAATTG  300

seq1  AAAGTTTAATTTGCTTATATATATATAATAAAGCAAGGGGGAAAGAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTAATTTGCTTATATATATATAATAAAGCAAGGGGGAAAGAAGAG  350

seq1  CAGATTACTGCATGTTAATAATCTTTCTTTGATTGCTTTGCTAATGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTACTGCATGTTAATAATCTTTCTTTGATTGCTTTGCTAATGTTTA  400

seq1  TTTTTATTCTAACAGTTAAATTCTCTTCCAAGGCTTAAAATAGTTTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTCTAACAGTTAAATTCTCTTCCAAGGCTTAAAATAGTTTGTTT  450

seq1  GTTTGTTTGTTTTGTTTTTGTTTTTAAAGTCACCTTACAAAGCAGTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTTTGTTTTTGTTTTTAAAGTCACCTTACAAAGCAGTGAGT  500

seq1  CTCGTGGCACCTTGTACTTGTTTTCCTCCCCTTCTATCACTGACTCTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTGGCACCTTGTACTTGTTTTCCTCCCCTTCTATCACTGACTCTGTC  550

seq1  TCTGTCTCTTTGCAAACACCCATCTTCAGGTCCAGCTTCTTTCCTAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTTTGCAAACACCCATCTTCAGGTCCAGCTTCTTTCCTAACAT  600

seq1  TCATTAAACCAAACCAAACAAAACAAAACTTTTCTCATCATTATTGCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAAACCAAACCAAACAAAACAAAACTTTTCTCATCATTATTGCTTA  650

seq1  ATTAAATGACATTTCATACAAATAATTTTAGCATCTAGACTTCAGTGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGACATTTCATACAAATAATTTTAGCATCTAGACTTCAGTGTTT  700

seq1  TTATGTCAAATCCCTGAGGAAACAATGGACTATTAAATACTTTAAAAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCAAATCCCTGAGGAAACAATGGACTATTAAATACTTTAAAAACC  750

seq1  AGTGTATTTGTATCTCACGTTGAAGACTGATACTATTTATATCATTTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATTTGTATCTCACGTTGAAGACTGATACTATTTATATCATTTCTT  800

seq1  AGTCTCTGCAGTACCTAATGGGCTTCACCTCTGAGTTCTTGCCATGTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTGCAGTACCTAATGGGCTTCACCTCTGAGTTCTTGCCATGTGTT  850

seq1  TGCATTGCATTAAACAATATCATGTGGTACAGGAGAAGAAGTGTAAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGCATTAAACAATATCATGTGGTACAGGAGAAGAAGTGTAAAAAT  900

seq1  GATTACTAATTGTTACCTAGTACGTGAATGTGACTTTGTTTGTTTGCACA  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GATTACTAATTGTTACCTAGTACGTGAATGTGACTTTG-TTGTTTGCACA  949

seq1  TGTCAGGTGCATGCATGTTTTTATTCATATGCCTAATTGGCTTGGAGATT  1000
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCA-GTGCATGCATGTTTTTATTCATATGCCTAATTGGCTTGGAGATT  998

seq1  TAAGAGGTTAGATACTTATAAGTGGAAAAGAG-TTTTCTTTTGTTGCTCT  1049
        ||| ||||||||||||||||| |||||||| |||||||||| ||||||
seq2  --AGA-GTTAGATACTTATAAGTTGAAAAGAGTTTTTCTTTTG-TGCTCT  1044

seq1  GGTTGTATATGACCAGTGTTACTGACGTTTAAACTTTACATTAAACAACA  1099
       ||||||||||| ||||| ||||||||||  ||||||||| ||| ||| |
seq2  -GTTGTATATGAACAGTG-TACTGACGTT--AACTTTACA-TAACCAAAA  1089

seq1  GCTTTATACATATTTGTG-AGATTTTGTTTTTGCTTCTATATATTAAGC  1147
      || ||||||||| ||||| |||     || |||||||| |||| |||||
seq2  GCCTTATACATA-TTGTGAAGA-----TTGTTGCTTCT-TATAATAAGC  1131