BAC Information

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BAC

Clone NameB6Ng01-247P02
Chromosome12 (Build37)
Map Location 39,995,777 - 40,106,735
singlet/doubletdoublet
Overlap genenone
Upstream geneDgkb, LOC668824, LOC100043142, Etv1, LOC100043145
Downstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247P02.bB6Ng01-247P02.g
ACCGA056148GA056149
length1,1851,023
definitionB6Ng01-247P02.b B6Ng01-247P02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,105,554 - 40,106,735)(39,995,777 - 39,996,801)
sequence
gaattcagagcaaattcatttttattaactttgttacagcttctaggggc
tttctgtttctttctcctgctccactagctctcatgcaaccaactatttt
aaaagttttttccattagatataaattttaggattttgctaaatattttg
tttctcttacatagttcaatgccctgtgtttatttttaacatctaacata
tgcatacaagtatagtttcttttacatttttatctttttatggagaatct
atattttttaaaccacaatggtattcatgttttgttgaggtatacctcta
cttaggttatttttctttttgggtcttttctacataagctagctcatgtg
aatttaattgcaaatttgatattctccacattcatttcacaatcttcaga
atatcaaatatatgttatttggattcagaaaaatcaacaaagcagccatc
tcttaagttccagtcttttaattgataccatagcattctgttttatttaa
gacgagaaaataatgttttccaagaaaagatgtgtaattttcattttttt
cttgcaattgtacagtaatgggatatctggctttaaataattcagaatct
attttatctgaattcacacttttgcttatgctgctggaattaaagtcagt
aaaataagcagtctcaagattcctatataagctatgtgcagaaagtacct
taattaataaatatacattaattgttaaagagtacatgtatagaatgcat
gagaaagtaagtgtatattaagatcaaggtctctaaattctaaatctcta
atacttgaagctcatagcaccgtattcttattgaattctatcattcccat
gtctcacttcactgtacattctaatatatctcttttgatttttagtgaat
attctggttaaattatctataatggaggtagaaaagtatattcattaatt
agcagtgggagtatttcagaggaaaagtggttcttataaaagagaatttg
aagtcaattatatccccttatcacacagccttaattcatttgcagactgg
agcagtattatgtcctgactattttacaggcttttttatgagatcgaata
gaatgattagtgaatacttttgaaagacctggcagctctagatgctggga
atgttttggtaatcagctaaatctcttttgtaatc

gaattctaggccagcctggtttccagagtgaatttctctctctaaaaaag
gcaagaaatggtgagaaaaatgtcttcaaaaatgttttcaaggacatctg
ggagagaaaggaaaaatgcacaaatttatggaatgtaaagaatcaaaaag
ccattcaatgcatataaaaggaaaatgtatttgatatagaaggaaatttt
ctgaagtacaggacttctggtgaaagttggcaaacagtaaataatgacac
acagacatgagaaataaaagagatgaatattctaggattcctccaaaact
gtgcattacattgaatgggcttggttttgctcattaaacagcatctacct
tcttccagtttactcatcaatggttctaatcagagtaaatgccttactct
taacaccttttcagtaaaatagtttaaaatttttaaacttagaagaatta
tttaatagtagtagattgcttgtcattgatatgtaattggaaactaacaa
aacaaatcttgggtattttgtttgttatttttgagatgatattttaatta
caatgtttctcccttctcccttcaaactctcccatatatacctccccact
cttcttcaaattcatggcctcttttaaaatcagttgttactgcattccta
tgtatatttatatatacatatatattccaaatgtatcctgttgggtccac
atagttctatgtactacttctatgtatattttcagagctgactatttgac
actggacaactaattggtgtaatttttctgggaagggctaattcttctct
cagctttactcagttgtgtgtagttctttgtgttgggttgagacctgtgg
acttttaaccatctagtttggcatgttggttgttgtctgcttattcagct
cacattcaggcagtcatatgggtgagattttgcaggattgcttctaatgt
ttctaggagatacatctccagcagagtacccaattttctgattcaagtct
tttatgttcccctcttcacaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_40105554_40106735
seq2: B6Ng01-247P02.b_45_1229 (reverse)

seq1  GATT-CAAAAGA---TCTGCTGATTTCACAAACATTCCCACAGCATCTTA  46
      |||| |||||||   |  ||||||| |  |||||||||  ||||||| ||
seq2  GATTACAAAAGAGATTTAGCTGATTACCAAAACATTCC--CAGCATC-TA  47

seq1  GAGCTGCACAGTC-TTCAAAAGTATTTCACCTAAATCATTCTATTCGATT  95
      |||||||   ||| |||||||||| |||||   ||||||||||||||| |
seq2  GAGCTGCCAGGTCTTTCAAAAGTA-TTCAC--TAATCATTCTATTCGA-T  93

seq1  CTCAT--AAAAGCCTTGTAAAATAGTCAGGACAT-ATACTGCTTCCAGTC  142
      |||||  ||||||| ||||||||||||||||||| ||||||| |||||||
seq2  CTCATAAAAAAGCC-TGTAAAATAGTCAGGACATAATACTGC-TCCAGTC  141

seq1  TGCAAATGATTTAAGGCTGTGTGATAAGGGGATAT-ATTGACTTC-AATT  190
      ||||||||| ||||||||||||||||||||||||| ||||||||| ||||
seq2  TGCAAATGAATTAAGGCTGTGTGATAAGGGGATATAATTGACTTCAAATT  191

seq1  CTCTTTTAT-AGAACCACTTTT-CTCTGAAATACTCCCACTGCTAATTAA  238
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  CTCTTTTATAAGAACCACTTTTCCTCTGAAATACTCCCACTGCTAATTAA  241

seq1  TGAATATACTTTTCTACCTCCATTATAGATAATTTAACCAGAATATTCAC  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATACTTTTCTACCTCCATTATAGATAATTTAACCAGAATATTCAC  291

seq1  TAAAAATCAAAAGAGATATATTAGAATGTACAGTGAAGTGAGACATGGGA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCAAAAGAGATATATTAGAATGTACAGTGAAGTGAGACATGGGA  341

seq1  ATGATAGAATTCAATAAGAATACGGTGCTATGAGCTTCAAGTATTAGAGA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGAATTCAATAAGAATACGGTGCTATGAGCTTCAAGTATTAGAGA  391

seq1  TTTAGAATTTAGAGACCTTGATCTTAATATACACTTACTTTCTCATGCAT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAATTTAGAGACCTTGATCTTAATATACACTTACTTTCTCATGCAT  441

seq1  TCTATACATGTACTCTTTAACAATTAATGTATATTTATTAATTAAGGTAC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACATGTACTCTTTAACAATTAATGTATATTTATTAATTAAGGTAC  491

seq1  TTTCTGCACATAGCTTATATAGGAATCTTGAGACTGCTTATTTTACTGAC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCACATAGCTTATATAGGAATCTTGAGACTGCTTATTTTACTGAC  541

seq1  TTTAATTCCAGCAGCATAAGCAAAAGTGTGAATTCAGATAAAATAGATTC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTCCAGCAGCATAAGCAAAAGTGTGAATTCAGATAAAATAGATTC  591

seq1  TGAATTATTTAAAGCCAGATATCCCATTACTGTACAATTGCAAGAAAAAA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTATTTAAAGCCAGATATCCCATTACTGTACAATTGCAAGAAAAAA  641

seq1  ATGAAAATTACACATCTTTTCTTGGAAAACATTATTTTCTCGTCTTAAAT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATTACACATCTTTTCTTGGAAAACATTATTTTCTCGTCTTAAAT  691

seq1  AAAACAGAATGCTATGGTATCAATTAAAAGACTGGAACTTAAGAGATGGC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGAATGCTATGGTATCAATTAAAAGACTGGAACTTAAGAGATGGC  741

seq1  TGCTTTGTTGATTTTTCTGAATCCAAATAACATATATTTGATATTCTGAA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGTTGATTTTTCTGAATCCAAATAACATATATTTGATATTCTGAA  791

seq1  GATTGTGAAATGAATGTGGAGAATATCAAATTTGCAATTAAATTCACATG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGAAATGAATGTGGAGAATATCAAATTTGCAATTAAATTCACATG  841

seq1  AGCTAGCTTATGTAGAAAAGACCCAAAAAGAAAAATAACCTAAGTAGAGG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCTTATGTAGAAAAGACCCAAAAAGAAAAATAACCTAAGTAGAGG  891

seq1  TATACCTCAACAAAACATGAATACCATTGTGGTTTAAAAAATATAGATTC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTCAACAAAACATGAATACCATTGTGGTTTAAAAAATATAGATTC  941

seq1  TCCATAAAAAGATAAAAATGTAAAAGAAACTATACTTGTATGCATATGTT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAAAAGATAAAAATGTAAAAGAAACTATACTTGTATGCATATGTT  991

seq1  AGATGTTAAAAATAAACACAGGGCATTGAACTATGTAAGAGAAACAAAAT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTAAAAATAAACACAGGGCATTGAACTATGTAAGAGAAACAAAAT  1041

seq1  ATTTAGCAAAATCCTAAAATTTATATCTAATGGAAAAAACTTTTAAAATA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCAAAATCCTAAAATTTATATCTAATGGAAAAAACTTTTAAAATA  1091

seq1  GTTGGTTGCATGAGAGCTAGTGGAGCAGGAGAAAGAAACAGAAAGCCCCT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTGCATGAGAGCTAGTGGAGCAGGAGAAAGAAACAGAAAGCCCCT  1141

seq1  AGAAGCTGTAACAAAGTTAATAAAAATGAATTTGCTCTGAATTC  1182
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTGTAACAAAGTTAATAAAAATGAATTTGCTCTGAATTC  1185


seq1: chr12_39995777_39996801
seq2: B6Ng01-247P02.g_67_1089

seq1  GAATTCTAGGCCAGCCTGGTTTCCAGAGTGAATTTCTCTCTCTAAAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGCCAGCCTGGTTTCCAGAGTGAATTTCTCTCTCTAAAAAAG  50

seq1  GCAAGAAATGGTGAGAAAAATGTCTTCAAAAATGTTTTCAAGGACATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAATGGTGAGAAAAATGTCTTCAAAAATGTTTTCAAGGACATCTG  100

seq1  GGAGAGAAAGGAAAAATGCACAAATTTATGGAATGTAAAGAATCAAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAAGGAAAAATGCACAAATTTATGGAATGTAAAGAATCAAAAAG  150

seq1  CCATTCAATGCATATAAAAGGAAAATGTATTTGATATAGAAGGAAATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCAATGCATATAAAAGGAAAATGTATTTGATATAGAAGGAAATTTT  200

seq1  CTGAAGTACAGGACTTCTGGTGAAAGTTGGCAAACAGTAAATAATGACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTACAGGACTTCTGGTGAAAGTTGGCAAACAGTAAATAATGACAC  250

seq1  ACAGACATGAGAAATAAAAGAGATGAATATTCTAGGATTCCTCCAAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACATGAGAAATAAAAGAGATGAATATTCTAGGATTCCTCCAAAACT  300

seq1  GTGCATTACATTGAATGGGCTTGGTTTTGCTCATTAAACAGCATCTACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATTACATTGAATGGGCTTGGTTTTGCTCATTAAACAGCATCTACCT  350

seq1  TCTTCCAGTTTACTCATCAATGGTTCTAATCAGAGTAAATGCCTTACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAGTTTACTCATCAATGGTTCTAATCAGAGTAAATGCCTTACTCT  400

seq1  TAACACCTTTTCAGTAAAATAGTTTAAAATTTTTAAACTTAGAAGAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACCTTTTCAGTAAAATAGTTTAAAATTTTTAAACTTAGAAGAATTA  450

seq1  TTTAATAGTAGTAGATTGCTTGTCATTGATATGTAATTGGAAACTAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAGTAGTAGATTGCTTGTCATTGATATGTAATTGGAAACTAACAA  500

seq1  AACAAATCTTGGGTATTTTGTTTGTTATTTTTGAGATGATATTTTAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATCTTGGGTATTTTGTTTGTTATTTTTGAGATGATATTTTAATTA  550

seq1  CAATGTTTCTCCCTTCTCCCTTCAAACTCTCCCATATATACCTCCCCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTTCTCCCTTCTCCCTTCAAACTCTCCCATATATACCTCCCCACT  600

seq1  CTTCTTCAAATTCATGGCCTCTTTTAAAATCAGTTGTTACTGCATTCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCAAATTCATGGCCTCTTTTAAAATCAGTTGTTACTGCATTCCTA  650

seq1  TGTATATTTATATATACATATATATTCCAAATGTATCCTGTTGGGTCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATTTATATATACATATATATTCCAAATGTATCCTGTTGGGTCCAC  700

seq1  ATAGTTCTATGTACTACTTCTATGTATATTTTCAGAGCTGACTATTTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCTATGTACTACTTCTATGTATATTTTCAGAGCTGACTATTTGAC  750

seq1  ACTGGACAACTAATTGGTGTAATTTTTCTGGGAAGGGCTAATTCTTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACAACTAATTGGTGTAATTTTTCTGGGAAGGGCTAATTCTTCTCT  800

seq1  CAGCTTTACTCAGTTGTGTGTAGTTCTTTGTGTTGGGTTGAGACCTGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTACTCAGTTGTGTGTAGTTCTTTGTGTTGGGTTGAGACCTGTGG  850

seq1  ACTTTTAACCATCTAGTTTGGCATGTTGGTTGTTGTCTGCTTATTCAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAACCATCTAGTTTGGCATGTTGGTTGTTGTCTGCTTATTCAGCT  900

seq1  CACATTCAGGCAGTCATATGGGTGAGATTTTGCAGGATTGCTTCTAATGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCAGGCAGTCATATGGGTGAGATTTTGCAGGATTGCTTCTAATGT  950

seq1  TTCTAGGAGATACAATCTCCCAGCAGAGTACCCAATTTTCTGATTCAAAG  1000
      ||||||||||||| |||| ||||||||||||||||||||||||||| |||
seq2  TTCTAGGAGATAC-ATCT-CCAGCAGAGTACCCAATTTTCTGATTC-AAG  997

seq1  TC-TTTATG-TCCCCTCTTCCACAAAG  1025
      || |||||| ||||||||| |||||||
seq2  TCTTTTATGTTCCCCTCTT-CACAAAG  1023


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