BAC Information

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BAC

Clone NameB6Ng01-248C02
Chromosome12 (Build37)
Map Location 71,753,189 - 71,881,661
singlet/doubletdoublet
Overlap geneLOC100041061
Upstream geneSos2, LOC100040879, L2hgdh, Atp5s, Cdkl1, Map4k5, Spg3a, EG622339, Sav1, LOC100040999, Nin, ENSMUSG00000056391, Gm804, Pygl, Trim9, Txndc1, LOC100040965
Downstream geneFrmd6, Actr10, Psma3, 3110056K07Rik, Arid4a, Timm9, LOC100041035, 2700049A03Rik, LOC666162, Dact1, LOC100041190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248C02.bB6Ng01-248C02.g
ACCGA056284GA056285
length1,0651,025
definitionB6Ng01-248C02.b B6Ng01-248C02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,880,592 - 71,881,661)(71,753,189 - 71,754,199)
sequence
gaattccataaagttcttatatatgtcatagaataatattcttcttttag
ttttttcaatcattcaaagactgcaaaaagtcctctttatgtgtggatca
ctatagcaagtggcccactcatactgcaaattatccattcatactaatga
ggtaataatatacctgtatctagccacagaccaagccacagagttagtaa
ggattctctcttcatcgttctttgttctggacttgacaccctacacccac
acccactcacgtccacacctactgtccccaagcctttccatagtaggtgg
gtcatccttcccaggttcccaggttcaaaaattgtctagcatgaaggcac
acacttgtagtctcaggaggttaaaagctaacttggtccaacctgtcccc
taagaaccaccttgcacagctgggagtggtagcacaggccttcaatctca
gccttcaggagcagaggcaagaggacagctctctgtgaccagcctggtct
acataaagttctgggtcagccagagctacacagtgagatcttatccccaa
agcaaactaaaataaaatgacaaacatgacttttcttttccttagtcagc
tctgtttcttggagtatctaattatctttcaggaagtcattcacatcaag
gagtgactggtagggaccagctatcgtctgggagtttccactctaagaat
atgtagttatgtaactaactggatgttgaagaagtcctttttgagcacag
gatatccagctgtttatccaggaaggtgattttgatgctgtgagtctggt
caagaaggttaagataattccgctgccaactgtttagccagggcagcaga
gcactagtgatataaaggaaaggccaagttcaaatcacagctgggcagtg
gtggtgcctgaacttaatttccagcactcgcagaggcaggggcaggtgaa
tccttgtgagttggaggccagcctggtctacagagcgagttctagacacc
agagctatacaagaaacctgtatcaaaaacaaacacagagagagagaaga
gaagaagaagagaga
gaattccaggttactggtagggttagcatgcagagaggctctgcaaattc
attttcagatttacaagagagagggggaaagacagagagagacagagaca
gacagagagaggcggagaaacagagacagagacaggtagagacagagatg
gagacagagacaaggagacagagagagaaagatggagacagagactgaga
gacaggcagatggcagaaagagggagggaggtagaaaaaatgtctctaat
gatcactctgatctacataaaatacaaaataagtatctcaaatgtttcta
aactgtacattaagtgctaatgtgtaccatgggaaatggggtttatttag
atctggaaagctaaaatcacacacaaagaaattgataaataaggataaag
aacttgtagttcaagttttccataatgagctgatgttattttataattgg
gaaaaaaatacaaaatgttaccatttaccaagaaatactcttttctctaa
gtggctttaagtttgaaacccagtttatttctaaactgagattactacca
gatcagatggaaaggtctaccatcaattaaaagtgaagggatcccaataa
gctggggccagaagaaactacatagaggggctggatcgacagagcagtag
ttaggagcactcagggctgccttcagttccaaacacacactgggtgctca
ctgctgcctctcactgcagttccgggagatacagcgccctcttctggcct
tggagggcatctgcatgcacacagtgcacatacctacactcagcagggta
tgcacacacaaacacacacacacacacacacacacacacacacacacaca
cacacacacacacaaaacaaataatgaaaaaaatttcagaaaagaaaaac
caaagaaacaaggtctaataaatgcttttccttttccttcatctgatctt
ttttgatcagttaagaaaaattcttagcaatgggggtgaaagggaaacaa
ttaggtcagtaagaacaagtcaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_71880592_71881661
seq2: B6Ng01-248C02.b_43_1107 (reverse)

seq1  TCTCTCTCTCTCTCCCTCTC-TCTCTCTGT-TGTTTTGGTTTTTTGATAC  48
        ||||||| ||| | |||| ||||||| | ||| || | ||||||||||
seq2  --TCTCTCT-TCTTCTTCTCTTCTCTCTCTCTGTGTTTG-TTTTTGATAC  46

seq1  AGGGTTTCTTTGTATAGCTCTGGTTGTCCTAGAACTCGCTCTGTAGACCA  98
      | |||||| |||||||||||||| ||| ||||||||||||||||||||||
seq2  A-GGTTTC-TTGTATAGCTCTGG-TGT-CTAGAACTCGCTCTGTAGACCA  92

seq1  GGCTGGCCTCCAACTCACAAGGATTCACCTGCCCCTGCCTCTGCGAGTGC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCTCCAACTCACAAGGATTCACCTGCCCCTGCCTCTGCGAGTGC  142

seq1  TGG-AATTAAGTTCAGGCACCACCACTGCCCAGCTGTGATTTGAACTTGG  197
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATTAAGTTCAGGCACCACCACTGCCCAGCTGTGATTTGAACTTGG  192

seq1  CCTTTCCTTTATATCACTAGTGCTCTGCTGCCCTGGCTAAACAGTTGGCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTTTATATCACTAGTGCTCTGCTGCCCTGGCTAAACAGTTGGCA  242

seq1  GCGGAATTATCTTAACCTTCTTGACCAGACTCACAGCATCAAAATCACCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAATTATCTTAACCTTCTTGACCAGACTCACAGCATCAAAATCACCT  292

seq1  TCCTGGATAAACAGCTGGATATCCTGTGCTCAAAAAGGACTTCTTCAACA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGATAAACAGCTGGATATCCTGTGCTCAAAAAGGACTTCTTCAACA  342

seq1  TCCAGTTAGTTACATAACTACATATTCTTAGAGTGGAAACTCCCAGACGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTAGTTACATAACTACATATTCTTAGAGTGGAAACTCCCAGACGA  392

seq1  TAGCTGGTCCCTACCAGTCACTCCTTGATGTGAATGACTTCCTGAAAGAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGTCCCTACCAGTCACTCCTTGATGTGAATGACTTCCTGAAAGAT  442

seq1  AATTAGATACTCCAAGAAACAGAGCTGACTAAGGAAAAGAAAAGTCATGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGATACTCCAAGAAACAGAGCTGACTAAGGAAAAGAAAAGTCATGT  492

seq1  TTGTCATTTTATTTTAGTTTGCTTTGGGGATAAGATCTCACTGTGTAGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTTTATTTTAGTTTGCTTTGGGGATAAGATCTCACTGTGTAGCT  542

seq1  CTGGCTGACCCAGAACTTTATGTAGACCAGGCTGGTCACAGAGAGCTGTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGACCCAGAACTTTATGTAGACCAGGCTGGTCACAGAGAGCTGTC  592

seq1  CTCTTGCCTCTGCTCCTGAAGGCTGAGATTGAAGGCCTGTGCTACCACTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCCTCTGCTCCTGAAGGCTGAGATTGAAGGCCTGTGCTACCACTC  642

seq1  CCAGCTGTGCAAGGTGGTTCTTAGGGGACAGGTTGGACCAAGTTAGCTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGTGCAAGGTGGTTCTTAGGGGACAGGTTGGACCAAGTTAGCTTT  692

seq1  TAACCTCCTGAGACTACAAGTGTGTGCCTTCATGCTAGACAATTTTTGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCCTGAGACTACAAGTGTGTGCCTTCATGCTAGACAATTTTTGAA  742

seq1  CCTGGGAACCTGGGAAGGATGACCCACCTACTATGGAAAGGCTTGGGGAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAACCTGGGAAGGATGACCCACCTACTATGGAAAGGCTTGGGGAC  792

seq1  AGTAGGTGTGGACGTGAGTGGGTGTGGGTGTAGGGTGTCAAGTCCAGAAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTGTGGACGTGAGTGGGTGTGGGTGTAGGGTGTCAAGTCCAGAAC  842

seq1  AAAGAACGATGAAGAGAGAATCCTTACTAACTCTGTGGCTTGGTCTGTGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACGATGAAGAGAGAATCCTTACTAACTCTGTGGCTTGGTCTGTGG  892

seq1  CTAGATACAGGTATATTATTACCTCATTAGTATGAATGGATAATTTGCAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATACAGGTATATTATTACCTCATTAGTATGAATGGATAATTTGCAG  942

seq1  TATGAGTGGGCCACTTGCTATAGTGATCCACACATAAAGAGGACTTTTTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTGGGCCACTTGCTATAGTGATCCACACATAAAGAGGACTTTTTG  992

seq1  CAGTCTTTGAATGATTGAAAAAACTAAAAGAAGAATATTATTCTATGACA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTTGAATGATTGAAAAAACTAAAAGAAGAATATTATTCTATGACA  1042

seq1  TATATAAGAACTTTATGGAATTC  1070
      |||||||||||||||||||||||
seq2  TATATAAGAACTTTATGGAATTC  1065

seq1: chr12_71753189_71754199
seq2: B6Ng01-248C02.g_62_1086

seq1  GAATTCCAGGTTACTGGTAGGGTTAGCATGCAGAGAGGCTCTGCAAATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTTACTGGTAGGGTTAGCATGCAGAGAGGCTCTGCAAATTC  50

seq1  ATTTTCAGATTTACAAGAGAGAGGGGGAAAGACAGAGAGAGACAGAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGATTTACAAGAGAGAGGGGGAAAGACAGAGAGAGACAGAGACA  100

seq1  GACAGAGAGAGGCGGAGAAACAGAGACAGAGACAGGTAGAGACAGAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGAGAGGCGGAGAAACAGAGACAGAGACAGGTAGAGACAGAGATG  150

seq1  GAGACAGAGACAAGGAGACAGAGAGAGAAAGATGGAGACAGAGACTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAGACAAGGAGACAGAGAGAGAAAGATGGAGACAGAGACTGAGA  200

seq1  GACAGGCAGATGGCAGAAAGAGGGAGGGAGGTAGAAAAAATGTCTCTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGCAGATGGCAGAAAGAGGGAGGGAGGTAGAAAAAATGTCTCTAAT  250

seq1  GATCACTCTGATCTACATAAAATACAAAATAAGTATCTCAAATGTTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACTCTGATCTACATAAAATACAAAATAAGTATCTCAAATGTTTCTA  300

seq1  AACTGTACATTAAGTGCTAATGTGTACCATGGGAAATGGGGTTTATTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTACATTAAGTGCTAATGTGTACCATGGGAAATGGGGTTTATTTAG  350

seq1  ATCTGGAAAGCTAAAATCACACACAAAGAAATTGATAAATAAGGATAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGAAAGCTAAAATCACACACAAAGAAATTGATAAATAAGGATAAAG  400

seq1  AACTTGTAGTTCAAGTTTTCCATAATGAGCTGATGTTATTTTATAATTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTAGTTCAAGTTTTCCATAATGAGCTGATGTTATTTTATAATTGG  450

seq1  GAAAAAAATACAAAATGTTACCATTTACCAAGAAATACTCTTTTCTCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAATACAAAATGTTACCATTTACCAAGAAATACTCTTTTCTCTAA  500

seq1  GTGGCTTTAAGTTTGAAACCCAGTTTATTTCTAAACTGAGATTACTACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTTAAGTTTGAAACCCAGTTTATTTCTAAACTGAGATTACTACCA  550

seq1  GATCAGATGGAAAGGTCTACCATCAATTAAAAGTGAAGGGATCCCAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGATGGAAAGGTCTACCATCAATTAAAAGTGAAGGGATCCCAATAA  600

seq1  GCTGGGGCCAGAAGAAACTACATAGAGGGGCTGGATCGACAGAGCAGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGCCAGAAGAAACTACATAGAGGGGCTGGATCGACAGAGCAGTAG  650

seq1  TTAGGAGCACTCAGGGCTGCCTTCAGTTCCAAACACACACTGGGTGCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGCACTCAGGGCTGCCTTCAGTTCCAAACACACACTGGGTGCTCA  700

seq1  CTGCTGCCTCTCACTGCAGTTCCGGGAGATACAGCGCCCTCTTCTGGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCCTCTCACTGCAGTTCCGGGAGATACAGCGCCCTCTTCTGGCCT  750

seq1  TGGAGGGCATCTGCATGCACACAGTGCACATACCTACACTCAGCAGGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGCATCTGCATGCACACAGTGCACATACCTACACTCAGCAGGGTA  800

seq1  TGCACACACAAACACACACACACACACACACACACACACACACACACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACACAAACACACACACACACACACACACACACACACACACACACA  850

seq1  CACACACACACACAAAACAAATAATGAAAAAAATTTCAGAAA--GAAAAC  898
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  CACACACACACACAAAACAAATAATGAAAAAAATTTCAGAAAAGAAAAAC  900

seq1  CAAAGAAACAAGGTCT-ATAAATGCTTTTCTTTTTCC-TCATCTGATCTT  946
      |||||||||||||||| ||||||||||||| |||||| ||||||||||||
seq2  CAAAGAAACAAGGTCTAATAAATGCTTTTCCTTTTCCTTCATCTGATCTT  950

seq1  TTTTGATCAGTT-AGAAAAATTCTTAGCA---TGGGTGAAAGGGAA--CA  990
      |||||||||||| ||||||||||||||||    |||||||||||||   |
seq2  TTTTGATCAGTTAAGAAAAATTCTTAGCAATGGGGGTGAAAGGGAAACAA  1000

seq1  TTA-GTCAGT-AGA--CAGTCAAAG  1011
      ||| |||||| |||   ||||||||
seq2  TTAGGTCAGTAAGAACAAGTCAAAG  1025