BAC Information

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BAC

Clone NameB6Ng01-248F09
Chromosome12 (Build37)
Map Location 41,986,718 - 42,038,029
singlet/doubletdoublet
Overlap genenone
Upstream geneZfp277, Dock4, LOC638487, LOC100043157, LOC100043162
Downstream geneLrrn3, Immp2l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248F09.bB6Ng01-248F09.g
ACCGA056440GA056441
length1,1691,091
definitionB6Ng01-248F09.b B6Ng01-248F09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,036,861 - 42,038,029)(41,986,718 - 41,987,796)
sequence
gaattcataggaagcacagatactgagagactaatgtctcctttgtgaaa
agcactgcaaataccaaggctgaaagaaattaataaaacacaaccacaaa
ttaaatgccaccatttacataaagccataataatgcatcctgaaacgtac
tgtgggcatcacttagaacctgaaagcaacatattacacagacagaagct
gagagagtccaggagaaaaagacggtttttgactccatgcttcacaactt
caaatgattaacaaaagggtttctttaacagagaagcttccaacaacaac
accaatgataatgataataactcatgaaggttctgttaattttataatca
ctattacattacatattcaaatttatcatttaatatgatccacagaactg
gatatatatgaccttttgccctaataaaatcatgtgaatagttttacata
aaaattttcaagtgaggaaaataacgaccaggaaaacaagtgctctactc
atgattaaggaccttcggatccagaccgaggtgtggaaggaccggaacca
gatgcagcaaagctttcatcgtgagtgataaagaaaagggacaggtcagg
ggtggccagactactggctgtcctttggaattactgctcaagccaaagac
cttaatagaacagaggagtgcccttccaaaagcagggttctaggttgagg
ctgctccaaaggatgtagtaacaacacctattagccagctttatctgtga
tcctattgtttggagcccagttactagatttctggaaacattaagtgtct
ttctgttcctcaacgctttagaaatttccgacaaaccgtattctacagca
tcccacttaattaattatgaaaatttttacttgtcccaaatgaaaatgga
gcagaaagatttctcccaagcactaagtggtggtctctctgttatgcgag
gctattgttttaagtgaaacagaagaatttaatggctttatttaaatact
tcttctagccaaccccatttaaaaatcatccattcctctcttgtttaagt
acttatgtattatgttttttgcattatagaaattattttatttacagtag
acagttcgggaaatgccatatggaaattggaatccaatgcctttatccaa
gcgaagtgagcatccatgc
gaattctattcagctttaaaaaaacgtgaagccatgacattacagataag
gtgagtcaacctgtcctagatttaaaaacttgctttgtttatagaaaatt
atagtgaaggagacattgactttgcatattactccatcccttaaaccgat
gcatagcctcacctgatccgcatccttccagagtgaagcacttgccagaa
ctgccgagtcatatggacgcatcatataaccccatgtcttttgctagtat
aagggttaattccctgccctgtgtgttctgtaagtttagacaaattaaga
atgacaagtgtcaatgctattatatacagaacagtttgattgttcttgaa
gtctgtgactccataaaaatttttgcttaaaaaattatgtgtatatggaa
aatttagaaatttaggtaagaataaaaaatgaaagaataatttgtgtatg
ttttccatgtgagtgatttttaaatttttttttagatgtcaaattatatc
tacaattctgggcatcttactttacatgatatgcaaagacatttcacatg
tttgaaatttatgatggcttgtccccattcttctgccttcttaaaaaatt
gattattttgtttacatttcaaatattgtcccccttcctggccttacctc
tgcaacctccccatcctatccccccatcccctttgcctctaagagggtac
acccttacccacccaaccactcctgcctcacccctctgggatttcccttc
actgggacaagcctctacagaaccaagtgactccccttgaggagggagtc
ctttggcacatatgcagctagagcctgaacccacccatgtatactctttg
gttggtggtttaagctcactgggagctctgaggggtgccggtttagttga
tattgttgttcttcctatgggggttgcagtcctcttcatttccatcagtc
cttttttttaactctttccattggggttcctagaactcagtccaattgtg
actctgagtatctggcgtgtggttcttagtggctggcagaagctcttcag
aggaatagcattaccaagctcttgccctataagccacatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_42036861_42038029
seq2: B6Ng01-248F09.b_47_1215 (reverse)

seq1  GCATGGATGCTCACTCTGCTTGGATTAAAAGCAATTTGGGATTTCCATTT  50
      |||||||||||||||  ||||||| |||| |||   | ||||| | ||||
seq2  GCATGGATGCTCACTTCGCTTGGA-TAAAGGCA---TTGGATTCCAATTT  46

seq1  CCATATGCCATTTTCCG-ACTGTCTAACTTGTTAAATAAAT-ATTTCTAT  98
      ||||||| ||||| ||| ||||||||   ||| ||  |||| ||||||||
seq2  CCATATGGCATTTCCCGAACTGTCTA--CTGTAAATAAAATAATTTCTAT  94

seq1  -ATGC-ATAAACATAATTAACAT-AGTACTTTAAAACAAGGAGAAGGAAT  145
       |||| | |||||||||  |||| |||||||  |||||| ||| ||||||
seq2  AATGCAAAAAACATAAT--ACATAAGTACTT--AAACAA-GAG-AGGAAT  138

seq1  GGATGATTTTTAA--TGGGTTTGCTAG-AGAAGTATTTAAATAAAGCCAT  192
      |||||||||||||   ||||| ||||| ||||||||||||||||||||||
seq2  GGATGATTTTTAAATGGGGTTGGCTAGAAGAAGTATTTAAATAAAGCCAT  188

seq1  T-AATTCTTCTGTTTCACTTAAA--CATAGCCTCGCATAACAGAGAGACC  239
      | |||||||||||||||||||||   ||||||||||||||||||||||||
seq2  TAAATTCTTCTGTTTCACTTAAAACAATAGCCTCGCATAACAGAGAGACC  238

seq1  A-CACTTAGTGCTTGGGAGAAATCTTTCTGCTCCATTTTCATTTGGGACA  288
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTAGTGCTTGGGAGAAATCTTTCTGCTCCATTTTCATTTGGGACA  288

seq1  AGTAAAAATTTTCATAATTAATTAAGTGGGATGCTGTAGAATACGGTTTG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAATTTTCATAATTAATTAAGTGGGATGCTGTAGAATACGGTTTG  338

seq1  TCGGAAATTTCTAAAGCGTTGAGGAACAGAAAGACACTTAATGTTTCCAG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAAATTTCTAAAGCGTTGAGGAACAGAAAGACACTTAATGTTTCCAG  388

seq1  AAATCTAGTAACTGGGCTCCAAACAATAGGATCACAGATAAAGCTGGCTA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAGTAACTGGGCTCCAAACAATAGGATCACAGATAAAGCTGGCTA  438

seq1  ATAGGTGTTGTTACTACATCCTTTGGAGCAGCCTCAACCTAGAACCCTGC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTGTTGTTACTACATCCTTTGGAGCAGCCTCAACCTAGAACCCTGC  488

seq1  TTTTGGAAGGGCACTCCTCTGTTCTATTAAGGTCTTTGGCTTGAGCAGTA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAAGGGCACTCCTCTGTTCTATTAAGGTCTTTGGCTTGAGCAGTA  538

seq1  ATTCCAAAGGACAGCCAGTAGTCTGGCCACCCCTGACCTGTCCCTTTTCT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAAAGGACAGCCAGTAGTCTGGCCACCCCTGACCTGTCCCTTTTCT  588

seq1  TTATCACTCACGATGAAAGCTTTGCTGCATCTGGTTCCGGTCCTTCCACA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACTCACGATGAAAGCTTTGCTGCATCTGGTTCCGGTCCTTCCACA  638

seq1  CCTCGGTCTGGATCCGAAGGTCCTTAATCATGAGTAGAGCACTTGTTTTC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGTCTGGATCCGAAGGTCCTTAATCATGAGTAGAGCACTTGTTTTC  688

seq1  CTGGTCGTTATTTTCCTCACTTGAAAATTTTTATGTAAAACTATTCACAT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCGTTATTTTCCTCACTTGAAAATTTTTATGTAAAACTATTCACAT  738

seq1  GATTTTATTAGGGCAAAAGGTCATATATATCCAGTTCTGTGGATCATATT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTATTAGGGCAAAAGGTCATATATATCCAGTTCTGTGGATCATATT  788

seq1  AAATGATAAATTTGAATATGTAATGTAATAGTGATTATAAAATTAACAGA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATAAATTTGAATATGTAATGTAATAGTGATTATAAAATTAACAGA  838

seq1  ACCTTCATGAGTTATTATCATTATCATTGGTGTTGTTGTTGGAAGCTTCT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCATGAGTTATTATCATTATCATTGGTGTTGTTGTTGGAAGCTTCT  888

seq1  CTGTTAAAGAAACCCTTTTGTTAATCATTTGAAGTTGTGAAGCATGGAGT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAAAGAAACCCTTTTGTTAATCATTTGAAGTTGTGAAGCATGGAGT  938

seq1  CAAAAACCGTCTTTTTCTCCTGGACTCTCTCAGCTTCTGTCTGTGTAATA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACCGTCTTTTTCTCCTGGACTCTCTCAGCTTCTGTCTGTGTAATA  988

seq1  TGTTGCTTTCAGGTTCTAAGTGATGCCCACAGTACGTTTCAGGATGCATT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTTTCAGGTTCTAAGTGATGCCCACAGTACGTTTCAGGATGCATT  1038

seq1  ATTATGGCTTTATGTAAATGGTGGCATTTAATTTGTGGTTGTGTTTTATT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGGCTTTATGTAAATGGTGGCATTTAATTTGTGGTTGTGTTTTATT  1088

seq1  AATTTCTTTCAGCCTTGGTATTTGCAGTGCTTTTCACAAAGGAGACATTA  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTTTCAGCCTTGGTATTTGCAGTGCTTTTCACAAAGGAGACATTA  1138

seq1  GTCTCTCAGTATCTGTGCTTCCTATGAATTC  1169
      |||||||||||||||||||||||||||||||
seq2  GTCTCTCAGTATCTGTGCTTCCTATGAATTC  1169

seq1: chr12_41986718_41987796
seq2: B6Ng01-248F09.g_65_1155

seq1  GAATTCTATTCAGCTTTAAAAAAACGTGAAGCCATGACATTACAGATAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTCAGCTTTAAAAAAACGTGAAGCCATGACATTACAGATAAG  50

seq1  GTGAGTCAACCTGTCCTAGATTTAAAAACTTGCTTTGTTTATAGAAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTCAACCTGTCCTAGATTTAAAAACTTGCTTTGTTTATAGAAAATT  100

seq1  ATAGTGAAGGAGACATTGACTTTGCATATTACTCCATCCCTTAAACCGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGAAGGAGACATTGACTTTGCATATTACTCCATCCCTTAAACCGAT  150

seq1  GCATAGCCTCACCTGATCCGCATCCTTCCAGAGTGAAGCACTTGCCAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGCCTCACCTGATCCGCATCCTTCCAGAGTGAAGCACTTGCCAGAA  200

seq1  CTGCCGAGTCATATGGACGCATCATATAACCCCATGTCTTTTGCTAGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGAGTCATATGGACGCATCATATAACCCCATGTCTTTTGCTAGTAT  250

seq1  AAGGGTTAATTCCCTGCCCTGTGTGTTCTGTAAGTTTAGACAAATTAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTAATTCCCTGCCCTGTGTGTTCTGTAAGTTTAGACAAATTAAGA  300

seq1  ATGACAAGTGTCAATGCTATTATATACAGAACAGTTTGATTGTTCTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAGTGTCAATGCTATTATATACAGAACAGTTTGATTGTTCTTGAA  350

seq1  GTCTGTGACTCCATAAAAATTTTTGCTTAAAAAATTATGTGTATATGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGACTCCATAAAAATTTTTGCTTAAAAAATTATGTGTATATGGAA  400

seq1  AATTTAGAAATTTAGGTAAGAATAAAAAATGAAAGAATAATTTGTGTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGAAATTTAGGTAAGAATAAAAAATGAAAGAATAATTTGTGTATG  450

seq1  TTTTCCATGTGAGTGATTTTTAAATTTTTTTTTAGATGTCAAATTATATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATGTGAGTGATTTTTAAATTTTTTTTTAGATGTCAAATTATATC  500

seq1  TACAATTCTGGGCATCTTACTTTACATGATATGCAAAGACATTTCACATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTCTGGGCATCTTACTTTACATGATATGCAAAGACATTTCACATG  550

seq1  TTTGAAATTTATGATGGCTTGTCCCCATTCTTCTGCCTTCTTAAAAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATTTATGATGGCTTGTCCCCATTCTTCTGCCTTCTTAAAAAATT  600

seq1  GATTATTTTGTTTACATTTCAAATATTGTCCCCCTTCCTGGCCTTACCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTTTGTTTACATTTCAAATATTGTCCCCCTTCCTGGCCTTACCTC  650

seq1  TGCAACCTCCCCATCCTATCCCCCCATCCCCTTTGCCTCTAAGAGGGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACCTCCCCATCCTATCCCCCCATCCCCTTTGCCTCTAAGAGGGTAC  700

seq1  ACCCTTACCCACCCAACCACTCCTGCCTCACCCCTCTGGGATTTCCCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTACCCACCCAACCACTCCTGCCTCACCCCTCTGGGATTTCCCTTC  750

seq1  ACTGGGACAAGCCTCTACAGAACCAAGTGACTCCCCTTGAGGAGGGAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGACAAGCCTCTACAGAACCAAGTGACTCCCCTTGAGGAGGGAGTC  800

seq1  CTTTGGCACATATGCAGCTAGAGCCTGAACCCACCCATGTATACTCTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCACATATGCAGCTAGAGCCTGAACCCACCCATGTATACTCTTTG  850

seq1  GTTGGTGGTTT-AGCTCACTGGGAGCTCTGAGGGGTGCCGG-TTAGTTGA  898
      ||||||||||| ||||||||||||||||||||||||||||| ||||||||
seq2  GTTGGTGGTTTAAGCTCACTGGGAGCTCTGAGGGGTGCCGGTTTAGTTGA  900

seq1  TATTGTTGTTCTTCCTAT-GGGGTTGCAGTCCTCTTCATTTCCATCAGTC  947
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TATTGTTGTTCTTCCTATGGGGGTTGCAGTCCTCTTCATTTCCATCAGTC  950

seq1  C-TTTTTTTAACTC-TTCCATTGGGGTTCCTAG-ACTCAGTCCAATTGTT  994
      | |||||||||||| |||||||||||||||||| |||||||||||||| |
seq2  CTTTTTTTTAACTCTTTCCATTGGGGTTCCTAGAACTCAGTCCAATTG-T  999

seq1  GACTCTGAGTATCT-GCGTGTG--TCTTAGGTGCTGGCAGAGCCTC-TCA  1040
      |||||||||||||| |||||||  ||||||  |||||||||  ||| |||
seq2  GACTCTGAGTATCTGGCGTGTGGTTCTTAGTGGCTGGCAGAAGCTCTTCA  1049

seq1  GAGG-ATAGCAATACCAGGCTCTTG-CCTATAAG-CACATCT  1079
      |||| |||||| ||||| ||||||| |||||||| |||||||
seq2  GAGGAATAGCATTACCAAGCTCTTGCCCTATAAGCCACATCT  1091