BAC Information

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BAC

Clone NameB6Ng01-248H17
Chromosome12 (Build37)17 (Build37)
Map Location 84,907,549 - 84,908,57329,256,687 - 29,257,056
singlet/doubletsingletsinglet
Overlap geneZfyve1
Upstream geneRgs6, Dpf3, Wdr21
Downstream geneLOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248H17.bB6Ng01-248H17.g
ACCGA056548GA056549
length1,030180
definitionB6Ng01-248H17.b B6Ng01-248H17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(84,907,549 - 84,908,573)(29,256,687 - 29,257,056)
sequence
gaattcattaggtagtttaggctggccttgaatctacagagatctgcctg
cctctgcttcccaagtgctgggactaaaggcataggccatcatacctagc
atttggttttaagctttctttttttggatttgagacagggtttctctgtg
taacccttgctgtcctgctgtcctggaactcactctgtagaccaggctgt
ccttggattcagaggcccacctgcttctacctcccaagtgctgggagtaa
aggcgtgtgccaccacgccggcttaatttttaattatgcatatgcttatg
agtgtgggctcaggtgcccctggaggctggaaggcagctttgggtcactt
ggtcctaagtaatcactctgcagaccagccctgacctattcttgctccat
tctttgtaatgcctaattagtttcactgtctctactagaagtaaatttga
atggtactgaataggtaaccttctcactgaattcctactgagttccaagc
tcttaggcttcaaggattttctagaatgttggaacactggtggaggctta
cctatgtcagcattcaatctttaaaggcacttataataaaacaatactga
aagagagcatacaccatactaatgcagggatagggtttgagtatatgggc
tatgagaatgccaaggttccttgaaactctgcctcgtgagtgctttcagg
cctctctctctgtcaagcagacttcactgaagtgggtgtagcaatgtgtg
tgttcatagtgagaccatatctcaaaagaacaagccttcttctgcttaca
gacagtatggttgagtcttgacgaaattttatgtcttatgctgtatgcac
tgatcagaacactcccctgcattactaaggtaggacattttccctagaga
aacttaaaactccttgatactgccatggaaatagaaatgcaaggcagccc
aggggttcagtgggtagaaggtgtttgcagagcacccaagccttacaaac
ttgaatttgagccctggtacccattatggt
tcagcctcccctgaatatacatatacacatacatacacatacttatacat
atgcatgtgcatatatatacatatatatatatatacacacacacacatat
atataatgtgtatatacatgtatgtatatatgtctgtgtgtatgtatgta
tgtatgtatgtatgtgtgtatgtgtatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_84907549_84908573
seq2: B6Ng01-248H17.b_47_1076 (reverse)

seq1  ACCAT-ATGGGT-CCAGGGCTCAAATTCAAG-TTGTTAGGCTT-GGTGCT  46
      ||||| |||||| |||||||||||||||||| |||| |||||| ||||||
seq2  ACCATAATGGGTACCAGGGCTCAAATTCAAGTTTGTAAGGCTTGGGTGCT  50

seq1  CTGCAAACACC-TCTACCCACTGAACCCCT-GGCTGCCTCTGCATTTCTA  94
      ||||||||||| |||||||||||||||||| |||||||| ||||||||||
seq2  CTGCAAACACCTTCTACCCACTGAACCCCTGGGCTGCCT-TGCATTTCTA  99

seq1  TTTCCATGGCAGTATCAAGGAGTTTTAAGTTTCTCTAGGGAAAATGTCCT  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATGGCAGTATCAAGGAGTTTTAAGTTTCTCTAGGGAAAATGTCCT  149

seq1  ACCTTTAGTAAATGCA-GGGAGTGTTCTGATCAGTGCATACAGCATAAGA  193
      ||| ||||| |||||| |||||||||||||||||||||||||||||||||
seq2  ACC-TTAGT-AATGCAGGGGAGTGTTCTGATCAGTGCATACAGCATAAGA  197

seq1  CAT-AAATTTCGTCAAGACTCAACCATACTGTCTGTAAGCAGAAGAAGGC  242
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATTTCGTCAAGACTCAACCATACTGTCTGTAAGCAGAAGAAGGC  247

seq1  TTGTTCTTTTGAGATATGGTCTCACTATGAACACACACATTGCTACACCC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTTTGAGATATGGTCTCACTATGAACACACACATTGCTACACCC  297

seq1  ACTTCAGTGAAGTCTGCTTGACAGAGAGAGAGGCCTGAAAGCACTCACGA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGTGAAGTCTGCTTGACAGAGAGAGAGGCCTGAAAGCACTCACGA  347

seq1  GGCAGAGTTTCAAGGAACCTTGGCATTCTCATAGCCCATATACTCAAACC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGTTTCAAGGAACCTTGGCATTCTCATAGCCCATATACTCAAACC  397

seq1  CTATCCCTGCATTAGTATGGTGTATGCTCTCTTTCAGTATTGTTTTATTA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCCTGCATTAGTATGGTGTATGCTCTCTTTCAGTATTGTTTTATTA  447

seq1  TAAGTGCCTTTAAAGATTGAATGCTGACATAGGTAAGCCTCCACCAGTGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCCTTTAAAGATTGAATGCTGACATAGGTAAGCCTCCACCAGTGT  497

seq1  TCCAACATTCTAGAAAATCCTTGAAGCCTAAGAGCTTGGAACTCAGTAGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACATTCTAGAAAATCCTTGAAGCCTAAGAGCTTGGAACTCAGTAGG  547

seq1  AATTCAGTGAGAAGGTTACCTATTCAGTACCATTCAAATTTACTTCTAGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGTGAGAAGGTTACCTATTCAGTACCATTCAAATTTACTTCTAGT  597

seq1  AGAGACAGTGAAACTAATTAGGCATTACAAAGAATGGAGCAAGAATAGGT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGTGAAACTAATTAGGCATTACAAAGAATGGAGCAAGAATAGGT  647

seq1  CAGGGCTGGTCTGCAGAGTGATTACTTAGGACCAAGTGACCCAAAGCTGC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTGGTCTGCAGAGTGATTACTTAGGACCAAGTGACCCAAAGCTGC  697

seq1  CTTCCAGCCTCCAGGGGCACCTGAGCCCACACTCATAAGCATATGCATAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGCCTCCAGGGGCACCTGAGCCCACACTCATAAGCATATGCATAA  747

seq1  TTAAAAATTAAGCCGGCGTGGTGGCACACGCCTTTACTCCCAGCACTTGG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATTAAGCCGGCGTGGTGGCACACGCCTTTACTCCCAGCACTTGG  797

seq1  GAGGTAGAAGCAGGTGGGCCTCTGAATCCAAGGACAGCCTGGTCTACAGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGAAGCAGGTGGGCCTCTGAATCCAAGGACAGCCTGGTCTACAGA  847

seq1  GTGAGTTCCAGGACAGCAGGACAGCAAGGGTTACACAGAGAAACCCTGTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCCAGGACAGCAGGACAGCAAGGGTTACACAGAGAAACCCTGTC  897

seq1  TCAAATCCAAAAAAAGAAAGCTTAAAACCAAATGCTAGGTATGATGGCCT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCCAAAAAAAGAAAGCTTAAAACCAAATGCTAGGTATGATGGCCT  947

seq1  ATGCCTTTAGTCCCAGCACTTGGGAAGCAGAGGCAGGCAGATCTCTGTAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTTAGTCCCAGCACTTGGGAAGCAGAGGCAGGCAGATCTCTGTAG  997

seq1  ATTCAAGGCCAGCCTAAACTACCTAATGAATTC  1025
      |||||||||||||||||||||||||||||||||
seq2  ATTCAAGGCCAGCCTAAACTACCTAATGAATTC  1030

seq1: chr17_29256687_29257056
seq2: B6Ng01-248H17.g_86_251 (reverse)

seq1  TATATACACATACACACATACGTATATATACATACATACCTACATGGACA  50
      |||||||||||||||||||||      |||||||||||| |||||  |||
seq2  TATATACACATACACACATAC------ATACATACATACATACATACACA  44

seq1  CATACACACATACATACACACCCACATATACACATGTATACAGACATATA  100
      || ||| | ||||||                ||||||||| | ||||   
seq2  CAGACATATATACAT----------------ACATGTATATACACAT---  75

seq1  TACACAAATATATATGCACACATATACACACATATACATACATATATACA  150
             |||||||||      | |  | | ||||| |||  |||||| |
seq2  ------TATATATATGTGTGTGTGTGTATATATATATATATGTATATATA  119

seq1  TGTACATACATATATACACATATATACATATGTATATACACACAAATATA  200
      || |||| |||        || ||||  ||||| |||         ||| 
seq2  TGCACATGCAT--------ATGTATAAGTATGTGTAT--------GTATG  153

seq1  TATACATGTATACAACATATACATACACATATGCAAACATATGCACAAAT  250
      | || |||||||                                      
seq2  TGTATATGTATAT-------------------------------------  166

seq1  ACATATACATTCACATAATACACATTTTCACCACCCATACACTTATACAC  300
                                                        
seq2  --------------------------------------------------  166

seq1  ATACACCGATATGTACATATACACTCATACATACATATGGACACACACAC  350
                                                        
seq2  --------------------------------------------------  166

seq1  ATATATGTGTATATGTATAT  370
                          
seq2  --------------------  166